Rw3G005400

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006425
Physical Location & Seq
Reverse (-)
4476671 .. 4479556
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005400.1

Sequence Viewer

Length: 795 bp
ATGGCTTCATCATGGAGGGACCCGTTTAGGACCTTTCTGATTGATCCCAATGACCTTCCTAGCAAGGCATGTGAAGTTCTGTACAAGGCCCATGAAGCAGCCATTAAGGAGTTGAAGCCCGGAAACAAAGCTTGTACTGCTTATGAAGCAGCAGTTTCTGTTGTAAAGAAGGAGGCCCCTGAATTATCATGTAAGATGACAACAAATACTAGACCAGGCATTATCTTTACACTCCATGAATCTGTTTTGGATCTCAATGGGCAAAATGAGCAACTGGTGAAAGAAGGCGAGGTGTTTAATATGTCCCTCGGTTTTGAGAACCTGCAGTGTTCCAAAGGAAAAAGAATCTCTATGTGGCTAGCAGACACTGTTACTGTACAGAGTGTTATTCCTGAGGTTCTGACAGCGAAGTGTTCTAAAACCAATGAGAATATTAAATTACCCTTAGCTGACAATGGAGGAGAAAGGCAGCCAGAGTTCATGATATTTGATGATGATGATGTAGAAATCTGCAAAAAACGGAAAAGAAGAGAGATGGAGGACTTGGAAGAAGCTTATAGTTTACAGACCCAATTGGATGCAAAAGTTAATGATATTGAGGCTCTTAATATCAAGTTGGAAGAGATCAATGCTGGAAGAGAAAAAAATAAAAGTGAGGATCAGGAATACTTGGCAGCTTTACATGTGCATGAGAAAAAGATAAACGACAGATTGAAGATGATGGAGTTGGCTAGGAAAGCTCAATCAGAATTTAACGAATTGGATCTCCAATTTGACGAATTTGATCACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

264

Amino Acids

30.1

Weight (kDa)

5.01

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 10 - 127 4.6e-10 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AclWI GGATC 4 cut(s) 38, 258, 666, 771
AcsI RAATTY 2 cut(s) 749, 779
AfaI GTAC 3 cut(s) 83, 136, 378
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 2 cut(s) 115, 715
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 5 cut(s) 131, 449, 554, 677, 740
AluI AGCT 5 cut(s) 131, 449, 554, 677, 740
AlwI GGATC 4 cut(s) 38, 258, 666, 771
AlwNI CAGNNNCTG 2 cut(s) 158, 368
AoxI GGCC 2 cut(s) 87, 174
ApeKI GCWGC 4 cut(s) 98, 149, 469, 674
ApoI RAATTY 2 cut(s) 749, 779
AspS9I GGNCC 4 cut(s) 19, 30, 88, 175
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 289, 779
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 19, 30
AxyI CCTNAGG 1 cut(s) 393
BbvI GCAGC 4 cut(s) 110, 161, 481, 686
BccI CCATC 2 cut(s) 529, 715
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 4 cut(s) 60, 210, 359, 732
BfmI CTRYAG 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 4 cut(s) 99, 150, 470, 675
BlsI GCNGC 4 cut(s) 100, 151, 471, 676
Bme1390I CCNGG 2 cut(s) 120, 216
Bme18I GGWCC 2 cut(s) 19, 30
BmgT120I GGNCC 4 cut(s) 19, 30, 88, 175
BmiI GGNNCC 3 cut(s) 20, 21, 177
BmrFI CCNGG 2 cut(s) 120, 216
BmsI GCATC 1 cut(s) 568
BmtI GCTAGC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 279
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 4 cut(s) 110, 161, 481, 686
BshFI GGCC 2 cut(s) 89, 176
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 32, 289
BsmFI GGGAC 2 cut(s) 32, 289
BsnI GGCC 2 cut(s) 89, 176
Bsp1407I TGTACA 2 cut(s) 81, 376
Bsp143I GATC 6 cut(s) 43, 250, 624, 658, 763, 784
BspANI GGCC 2 cut(s) 89, 176
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 20, 21, 177
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 4 cut(s) 38, 258, 666, 771
BsrGI TGTACA 2 cut(s) 81, 376
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 6 cut(s) 43, 250, 624, 658, 763, 784
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 4 cut(s) 211, 292, 567, 589
Bst6I CTCTTC 3 cut(s) 523, 615, 631
BstAUI TGTACA 2 cut(s) 81, 376
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 393, 445
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 6 cut(s) 46, 253, 627, 661, 766, 787
BstMBI GATC 6 cut(s) 43, 250, 624, 658, 763, 784
BstMWI GCNNNNNNNGC 5 cut(s) 95, 137, 146, 268, 737
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 72, 686
BstSCI CCNGG 2 cut(s) 118, 214
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 110, 161, 481, 686
BstX2I RGATCY 2 cut(s) 250, 763
BstYI RGATCY 2 cut(s) 250, 763
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 332, 366
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 360
CaiI CAGNNNCTG 2 cut(s) 158, 368
CciI TCATGA 1 cut(s) 480
Cfr13I GGNCC 4 cut(s) 19, 30, 88, 175
Csp6I GTAC 3 cut(s) 82, 135, 377
CviAII CATG 8 cut(s) 12, 69, 92, 189, 236, 481, 683, 689
CviQI GTAC 3 cut(s) 82, 135, 377
DdeI CTNAG 2 cut(s) 393, 445
DpnI GATC 6 cut(s) 45, 252, 626, 660, 765, 786
DpnII GATC 6 cut(s) 43, 250, 624, 658, 763, 784
Eam1104I CTCTTC 3 cut(s) 523, 615, 631
EarI CTCTTC 3 cut(s) 523, 615, 631
Eco47I GGWCC 2 cut(s) 19, 30
Eco81I CCTNAGG 1 cut(s) 393
EcoO109I RGGNCCY 3 cut(s) 19, 30, 175
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
FaqI GGGAC 2 cut(s) 32, 289
FatI CATG 8 cut(s) 11, 68, 91, 188, 235, 480, 682, 688
Fnu4HI GCNGC 4 cut(s) 99, 150, 470, 675
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 4 cut(s) 99, 150, 470, 675
FspBI CTAG 4 cut(s) 60, 210, 359, 732
GluI GCNGC 4 cut(s) 99, 150, 470, 675
HaeIII GGCC 2 cut(s) 89, 176
HapII CCGG 1 cut(s) 120
Hin1II CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
HindIII AAGCTT 2 cut(s) 129, 552
HinfI GANTC 2 cut(s) 239, 345
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 289, 779
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 39, 402, 748
Hpy188III TCNNGA 3 cut(s) 392, 481, 662
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 65, 163, 278
HpyCH4III ACNGT 2 cut(s) 370, 376
HpyCH4V TGCA 4 cut(s) 325, 513, 581, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 137, 146, 268, 737
HpyF3I CTNAG 2 cut(s) 393, 445
Hsp92II CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
KflI GGGWCCC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 6 cut(s) 43, 250, 624, 658, 763, 784
Lsp1109I GCAGC 4 cut(s) 110, 161, 481, 686
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 60, 210, 359, 732
MaeIII GTNAC 1 cut(s) 370
MalI GATC 6 cut(s) 45, 252, 626, 660, 765, 786
MboI GATC 6 cut(s) 43, 250, 624, 658, 763, 784
MboII GAAGA 5 cut(s) 540, 560, 632, 648, 727
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 2 cut(s) 250, 763
MluCI AATT 7 cut(s) 182, 437, 572, 749, 758, 770, 779
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 9 cut(s) 9, 166, 283, 317, 388, 452, 532, 592, 649
MseI TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
MslI CAYNNNNRTG 1 cut(s) 687
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 120, 216
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 5 cut(s) 95, 137, 146, 268, 737
NciI CCSGG 1 cut(s) 120
NdeII GATC 6 cut(s) 43, 250, 624, 658, 763, 784
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
NlaIV GGNNCC 3 cut(s) 20, 21, 177
NspI RCATGY 2 cut(s) 72, 686
PagI TCATGA 1 cut(s) 480
PciI ACATGT 1 cut(s) 682
PfeI GAWTC 2 cut(s) 239, 345
PkrI GCNGC 4 cut(s) 100, 151, 471, 676
PpuMI RGGWCCY 2 cut(s) 19, 30
PscI ACATGT 1 cut(s) 682
Psp5II RGGWCCY 2 cut(s) 19, 30
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 20, 21, 177
PspPI GGNCC 4 cut(s) 19, 30, 88, 175
PspPPI RGGWCCY 2 cut(s) 19, 30
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 2 cut(s) 158, 368
PsuI RGATCY 2 cut(s) 250, 763
RsaI GTAC 3 cut(s) 83, 136, 378
RsaNI GTAC 3 cut(s) 82, 135, 377
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
SatI GCNGC 4 cut(s) 99, 150, 470, 675
Sau3AI GATC 6 cut(s) 43, 250, 624, 658, 763, 784
Sau96I GGNCC 4 cut(s) 19, 30, 88, 175
ScrFI CCNGG 2 cut(s) 120, 216
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 323
SinI GGWCC 2 cut(s) 19, 30
SmiMI CAYNNNNRTG 1 cut(s) 687
Sse9I AATT 7 cut(s) 182, 437, 572, 749, 758, 770, 779
SspI AATATT 1 cut(s) 433
SspMI CTAG 4 cut(s) 60, 210, 359, 732
StyD4I CCNGG 2 cut(s) 118, 214
TaaI ACNGT 2 cut(s) 370, 376
TasI AATT 7 cut(s) 182, 437, 572, 749, 758, 770, 779
TatI WGTACW 3 cut(s) 81, 134, 376
TfiI GAWTC 2 cut(s) 239, 345
Tru1I TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
Tru9I TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
TscAI CASTG 2 cut(s) 332, 373
TseI GCWGC 4 cut(s) 98, 149, 469, 674
TspDTI ATGAA 4 cut(s) 108, 159, 252, 469
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 332, 373
VpaK11BI GGWCC 2 cut(s) 19, 30
XapI RAATTY 2 cut(s) 749, 779
XceI RCATGY 2 cut(s) 72, 686
XspI CTAG 4 cut(s) 60, 210, 359, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.