RchiOBHm_Chr2g0088991

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002477
Physical Location & Seq
Reverse (-)
3316198 .. 3317766
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGCCTCTGCTTCATCATCTCAATAGTCATGGGCGTGAAGACGAACAAATTGTGGAAGAGTTCCATGGATGCAGAAGTAAGCCTGCACGTGGTGAGAGTAGCCGCAATCAATCCCCTCTTCTTCCTGGACTCCCCGATGATCTTGCTATTGCTTGCCTAATTCGGGTCCCAAGAGTGGAGCATCGTAAGCTCCGCCTAGTTTGCAAAAGATGGTACCGTCTTCTGGCTGGCAACTTCTTTTACTCTCTCCGTAAGAGCATTGGCATTGCCGAAGAATGGATATACTTGATTAAAAGAGATCGAGATGGGAAAATATCTTGGCATGCCTTTGACCCTGTATACCAGCTATGGCAGTCCCTTCCTCCTGTCCCTAAGGAATATTCTGAAGCTCTTGGATTTGGTTGTGCTGTACTCGGTGGCTGTCACCTCTATCTGTTTGGAGGAAAGGACCCTCTAAAGGGATCAATGAGACGAGTCATTTTTTACAGTGCCAGGACCAATAAATGGCATCGTGCCCCAGATATGCTTCGCAGGCGACATTTTTTTGGCTCGTGTGTTATAAATAACTGCCTCTATGTTGCTGGTGGAGAGAATGAGGGGGTGCATAGGTCCTTGAGATCAGCAGAAGTCTATGATCCCAACAAGAATAGATGGTCCTTCATTTCAGATATGAGCACTGCAATGGTGCCTTTCATTGGGGTTGTCTACGAAGGCAAATGGTTCTTAAAGGGGCTCGGGTCTCATCGACAAGTCCTGAGTGAGGTCTATCAACCAGAAAATGACAGCTGGTACTCTGTGTATGACGGAATGGTTGCAGGCTGGCGGAACCCCAGTGCTTCTTTAAATGGGCATCTCTATGCTTTGGAGTGCAAGGATGGCTGCAAACTCAGAGTTTACGATGAGGCAACTGATTCTTGGAGCAAGCATATCGACAGTAAGATACATTTGGGTAACTCTAGGGCCTTGGAGGCAGCTTCCCTGGTTCCCCTTAACGGTAAACTTTGCATCATCCGAAATAATATGAGTATTTCACTTGTTGATGTTTCGAAATCAAATGATGCTGGTGGAGCAAGTGCTGAACATCTGTGGGAAACTCTAGCAGGCAAAGGGCAGTTCAGGACAATGGTCACAAATCTGTGGTCAAGCCTTGCCGGCAGAAACCGCCTGAAAAGTCACATAGTTCACTGCCAGGTTCTTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

401

Amino Acids

45.46

Weight (kDa)

9.22

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 78 3.6e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 106 - 266 5.6e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 115 - 229 1.7e-10 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 120 - 308 1e-19 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 153 - 264 2.1e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 178 - 225 3.2e-15 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 213, 685
AccB7I CCANNNNNTGG 1 cut(s) 504
AccI GTMKAC 2 cut(s) 339, 705
AciI CCGC 4 cut(s) 103, 193, 823, 1162
AclWI GGATC 2 cut(s) 469, 629
AcuI CTGAAG 1 cut(s) 405
AcvI CACGTG 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 3 cut(s) 215, 411, 791
AgsI TTSAA 1 cut(s) 1199
AjnI CCWGG 4 cut(s) 124, 491, 978, 1188
AluBI AGCT 6 cut(s) 190, 346, 389, 786, 974, 1202
AluI AGCT 6 cut(s) 190, 346, 389, 786, 974, 1202
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 463, 744
AlwI GGATC 2 cut(s) 469, 629
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 960
ApeKI GCWGC 2 cut(s) 879, 971
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
AsuHPI GGTGA 2 cut(s) 104, 416
AsuII TTCGAA 1 cut(s) 1046
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 5 cut(s) 166, 448, 495, 609, 654
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 517
BanI GGYRCC 2 cut(s) 213, 685
BanII GRGCYC 1 cut(s) 735
BauI CACGAG 1 cut(s) 550
BbrPI CACGTG 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 45, 212
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 866, 983
BccI CCATC 4 cut(s) 204, 299, 645, 869
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 910, 944
BciT130I CCWGG 4 cut(s) 126, 493, 980, 1190
BcoDI GTCTC 2 cut(s) 463, 744
BfaI CTAG 3 cut(s) 197, 957, 1097
BglI GCCNNNNNGGC 2 cut(s) 968, 1152
BisI GCNGC 3 cut(s) 103, 880, 972
BlsI GCNGC 3 cut(s) 104, 881, 973
Bme1390I CCNGG 4 cut(s) 126, 493, 980, 1190
Bme18I GGWCC 5 cut(s) 166, 448, 495, 609, 654
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
BmiI GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
BmrFI CCNGG 4 cut(s) 126, 493, 980, 1190
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
BmuI ACTGGG 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 1124
BpiI GAAGAC 2 cut(s) 45, 212
Bpu14I TTCGAA 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 634
BsaAI YACGTR 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 744
BsaJI CCNNGG 3 cut(s) 64, 963, 978
Bse118I RCCGGY 1 cut(s) 1151
Bse1I ACTGG 1 cut(s) 831
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 264, 687
BseBI CCWGG 4 cut(s) 126, 493, 980, 1190
BseDI CCNNGG 3 cut(s) 64, 963, 978
BseGI GGATG 3 cut(s) 74, 880, 1008
BseMI GCAATG 2 cut(s) 264, 687
BseMII CTCAG 2 cut(s) 746, 901
BseNI ACTGG 1 cut(s) 831
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 2 cut(s) 866, 983
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 962
BshNI GGYRCC 2 cut(s) 213, 685
BsiHKAI GWGCWC 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 1152
BslFI GGGAC 3 cut(s) 152, 340, 353
BsmAI GTCTC 2 cut(s) 463, 744
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 3 cut(s) 152, 340, 353
BsnI GGCC 1 cut(s) 962
Bso31I GGTCTC 1 cut(s) 744
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 517, 677, 735
Bsp143I GATC 5 cut(s) 139, 298, 461, 617, 634
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 4 cut(s) 103, 193, 823, 1162
BspANI GGCC 1 cut(s) 962
BspCNI CTCAG 2 cut(s) 747, 900
BspLI GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
BspPI GGATC 2 cut(s) 469, 629
BspT104I TTCGAA 1 cut(s) 1046
BspT107I GGYRCC 2 cut(s) 213, 685
BspTNI GGTCTC 1 cut(s) 744
BsrDI GCAATG 2 cut(s) 264, 687
BsrFI RCCGGY 1 cut(s) 1151
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 1151
BssECI CCNNGG 3 cut(s) 64, 963, 978
BssMI GATC 5 cut(s) 139, 298, 461, 617, 634
BssNAI GTATAC 1 cut(s) 340
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 2 cut(s) 64, 963
Bst1107I GTATAC 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 550
Bst2UI CCWGG 4 cut(s) 126, 493, 980, 1190
Bst4CI ACNGT 4 cut(s) 218, 488, 935, 995
Bst6I CTCTTC 2 cut(s) 51, 123
BstBAI YACGTR 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 1046
BstDEI CTNAG 4 cut(s) 372, 755, 887, 1203
BstDSI CCRYGG 1 cut(s) 64
BstENI CCTNNNNNAGG 1 cut(s) 758
BstF5I GGATG 3 cut(s) 74, 880, 1008
BstKTI GATC 5 cut(s) 142, 301, 464, 620, 637
BstMAI GTCTC 2 cut(s) 463, 744
BstMBI GATC 5 cut(s) 139, 298, 461, 617, 634
BstMWI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
BstNI CCWGG 4 cut(s) 126, 493, 980, 1190
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 1124
BstSCI CCNGG 4 cut(s) 124, 491, 978, 1188
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 866, 983
BstV2I GAAGAC 2 cut(s) 45, 212
BstZ17I GTATAC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 1 cut(s) 962
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 74, 880, 1008
BtsI GCAGTG 2 cut(s) 675, 1183
BtsIMutI CAGTG 4 cut(s) 493, 675, 838, 1183
Cfr10I RCCGGY 1 cut(s) 1151
Cfr13I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
Csp6I GTAC 3 cut(s) 214, 410, 790
CviAII CATG 3 cut(s) 29, 65, 323
CviQI GTAC 3 cut(s) 214, 410, 790
DdeI CTNAG 4 cut(s) 372, 755, 887, 1203
DpnI GATC 5 cut(s) 141, 300, 463, 619, 636
DpnII GATC 5 cut(s) 139, 298, 461, 617, 634
DraI TTTAAA 1 cut(s) 843
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 51, 123
EarI CTCTTC 2 cut(s) 51, 123
EciI GGCGGA 2 cut(s) 182, 838
Eco130I CCWWGG 2 cut(s) 64, 963
Eco24I GRGCYC 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 744
Eco47I GGWCC 5 cut(s) 166, 448, 495, 609, 654
Eco57I CTGAAG 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 734
EcoNI CCTNNNNNAGG 1 cut(s) 758
EcoO109I RGGNCCY 4 cut(s) 166, 448, 609, 960
EcoRII CCWGG 4 cut(s) 124, 491, 978, 1188
EcoT14I CCWWGG 2 cut(s) 64, 963
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 2 cut(s) 64, 963
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 3 cut(s) 32, 68, 326
FaqI GGGAC 3 cut(s) 152, 340, 353
FatI CATG 3 cut(s) 28, 64, 322
FblI GTMKAC 2 cut(s) 339, 705
Fnu4HI GCNGC 3 cut(s) 103, 880, 972
FokI GGATG 3 cut(s) 81, 887, 995
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 3 cut(s) 103, 880, 972
FspBI CTAG 3 cut(s) 197, 957, 1097
GluI GCNGC 3 cut(s) 103, 880, 972
HaeIII GGCC 1 cut(s) 962
HapII CCGG 1 cut(s) 1152
Hin1II CATG 3 cut(s) 32, 68, 326
HindIII AAGCTT 1 cut(s) 1200
HinfI GANTC 3 cut(s) 129, 474, 911
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 2 cut(s) 104, 416
Hpy166II GTNNAC 5 cut(s) 340, 706, 895, 998, 1183
Hpy188I TCNGA 4 cut(s) 385, 667, 890, 1013
Hpy188III TCNNGA 3 cut(s) 302, 754, 1117
Hpy8I GTNNAC 5 cut(s) 340, 706, 895, 998, 1183
HpyAV CCTTC 3 cut(s) 368, 667, 704
HpyCH4III ACNGT 4 cut(s) 218, 488, 935, 995
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 9 cut(s) 72, 86, 204, 604, 680, 815, 870, 882, 1005
HpyF10VI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
HpyF3I CTNAG 4 cut(s) 372, 755, 887, 1203
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 32, 68, 326
KflI GGGWCCC 1 cut(s) 166
KpnI GGTACC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 1151
KroNI GCCGGC 1 cut(s) 1153
Kzo9I GATC 5 cut(s) 139, 298, 461, 617, 634
LmnI GCTCC 4 cut(s) 178, 195, 918, 1067
Lsp1109I GCAGC 2 cut(s) 866, 983
LweI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
MaeI CTAG 3 cut(s) 197, 957, 1097
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 4 cut(s) 422, 950, 1126, 1172
MalI GATC 5 cut(s) 141, 300, 463, 619, 636
MboI GATC 5 cut(s) 139, 298, 461, 617, 634
MboII GAAGA 7 cut(s) 50, 68, 110, 113, 212, 284, 1187
MhlI GDGCHC 3 cut(s) 517, 677, 735
MluCI AATT 2 cut(s) 48, 159
MlyI GAGTC 2 cut(s) 123, 483
MroNI GCCGGC 1 cut(s) 1151
MseI TTAA 4 cut(s) 291, 725, 842, 990
MslI CAYNNNNRTG 3 cut(s) 33, 680, 855
MspA1I CMGCKG 1 cut(s) 786
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 4 cut(s) 126, 493, 980, 1190
MvaI CCWGG 4 cut(s) 126, 493, 980, 1190
MwoI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
NaeI GCCGGC 1 cut(s) 1153
NcoI CCATGG 1 cut(s) 64
NdeII GATC 5 cut(s) 139, 298, 461, 617, 634
NgoMIV GCCGGC 1 cut(s) 1151
NlaIII CATG 3 cut(s) 32, 68, 326
NlaIV GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
NmuCI GTSAC 3 cut(s) 422, 1126, 1172
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 1046
PaeI GCATGC 1 cut(s) 326
PdiI GCCGGC 1 cut(s) 1153
PfeI GAWTC 1 cut(s) 911
PflMI CCANNNNNTGG 1 cut(s) 504
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 104, 881, 973
PleI GAGTC 2 cut(s) 123, 482
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
PpsI GAGTC 2 cut(s) 123, 482
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 3 cut(s) 166, 448, 609
PshAI GACNNNNGTC 1 cut(s) 1124
PsiI TTATAA 1 cut(s) 560
Psp5II RGGWCCY 3 cut(s) 166, 448, 609
Psp6I CCWGG 4 cut(s) 124, 491, 978, 1188
PspCI CACGTG 1 cut(s) 89
PspGI CCWGG 4 cut(s) 124, 491, 978, 1188
PspN4I GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
PspPI GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
PspPPI RGGWCCY 3 cut(s) 166, 448, 609
PvuII CAGCTG 1 cut(s) 786
RsaI GTAC 3 cut(s) 215, 411, 791
RsaNI GTAC 3 cut(s) 214, 410, 790
RseI CAYNNNNRTG 3 cut(s) 33, 680, 855
SaqAI TTAA 4 cut(s) 291, 725, 842, 990
SatI GCNGC 3 cut(s) 103, 880, 972
Sau3AI GATC 5 cut(s) 139, 298, 461, 617, 634
Sau96I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
SchI GAGTC 2 cut(s) 123, 483
ScrFI CCNGG 4 cut(s) 126, 493, 980, 1190
SduI GDGCHC 3 cut(s) 517, 677, 735
SfaNI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
SfuI TTCGAA 1 cut(s) 1046
SinI GGWCC 5 cut(s) 166, 448, 495, 609, 654
SmiMI CAYNNNNRTG 3 cut(s) 33, 680, 855
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 48, 159
SsiI CCGC 4 cut(s) 103, 193, 823, 1162
SspI AATATT 1 cut(s) 380
SspMI CTAG 3 cut(s) 197, 957, 1097
StyD4I CCNGG 4 cut(s) 124, 491, 978, 1188
StyI CCWWGG 2 cut(s) 64, 963
TaaI ACNGT 4 cut(s) 218, 488, 935, 995
TaiI ACGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 301, 745, 930, 1046
TasI AATT 2 cut(s) 48, 159
TatI WGTACW 1 cut(s) 409
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 4 cut(s) 291, 725, 842, 990
Tru9I TTAA 4 cut(s) 291, 725, 842, 990
TscAI CASTG 4 cut(s) 493, 682, 838, 1190
TseFI GTSAC 3 cut(s) 422, 1126, 1172
TseI GCWGC 2 cut(s) 879, 971
Tsp45I GTSAC 3 cut(s) 422, 1126, 1172
TspDTI ATGAA 2 cut(s) 649, 682
TspGWI ACGGA 2 cut(s) 239, 819
TspRI CASTG 4 cut(s) 493, 682, 838, 1190
Van91I CCANNNNNTGG 1 cut(s) 504
VpaK11BI GGWCC 5 cut(s) 166, 448, 495, 609, 654
XagI CCTNNNNNAGG 1 cut(s) 758
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 339, 705
XspI CTAG 3 cut(s) 197, 957, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.