RchiOBHm_Chr2g0111211

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
22792728 .. 22793991
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGGGAGACGACAACGAGGGGGTGAAGAACAAAGCTGTCCAGATAATCACACAACACAGCCAGAACCAGGACTTACCTTCTCTCGTCGTCTTCGATCTCGACTACACTCTCTGGCCTTTCTACTGCGAATTTGAAGAAGATGACATGCCATATCTGTACCCACAAGCCTTGCCCATCCTGCATGCTCTCAAAGAAAAGGGAGTATCAATGGCCGTGGCCTCAAGATCCCCAACTCCCGATGTAGCCAAATCGTTCCTTCAAACTTTGGGCATCAGCTCCTTCTTTGTGACCCAGGAGATTTTCTCGAGCAGTACTCACAAAACAGAGCATTTTCGGAATATTCATGCAACAACGGGGGTGCCCTTTACCTCAATGCTATTCTTTGATGATGAGGATAGGAATATTCATGCGGTATCGAAAATGGGGGTGACAAGCATTTTAGTTGGTAATGGGGTGAACCTTGGAGCTTTGGGGCAGGGATTGTCTGAGTTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.26

Weight (kDa)

4.81

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 25 - 44 3.6e-06 Acid Phosphatase
Hydrolase PF00702 35 - 137 1.3e-06 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 47 - 148 1.2e-07 Haloacid dehalogenase-like hydrolase
Acid_PPase PF12689 52 - 164 4.5e-27 Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 410
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 2 cut(s) 158, 313
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 134, 260
AjnI CCWGG 2 cut(s) 66, 291
AluBI AGCT 3 cut(s) 35, 276, 467
AluI AGCT 3 cut(s) 35, 276, 467
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 3 cut(s) 113, 210, 216
ApoI RAATTY 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 34, 439, 466
AvaI CYCGRG 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 82
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 68, 293
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 68, 293
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 68, 293
BmsI GCATC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 82
BplI GAGNNNNNCTC 4 cut(s) 287, 319, 298, 330
BpuEI CTTGAG 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 213, 291, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 68, 293
BseDI CCNNGG 3 cut(s) 213, 291, 460
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 363
BshFI GGCC 3 cut(s) 115, 212, 218
BshNI GGYRCC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 115, 212, 218
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 94, 224
BspACI CCGC 1 cut(s) 410
BspANI GGCC 3 cut(s) 115, 212, 218
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 213, 291, 460
BssMI GATC 2 cut(s) 94, 224
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 68, 293
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 97, 227
BstMBI GATC 2 cut(s) 94, 224
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 68, 293
BstNSI RCATGY 2 cut(s) 148, 185
BstSCI CCNGG 2 cut(s) 66, 291
BstSLI GKGCMC 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 3 cut(s) 115, 212, 218
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 494
Csp6I GTAC 2 cut(s) 157, 312
CspCI CAANNNNNGTGG 4 cut(s) 150, 185, 195, 230
CviAII CATG 5 cut(s) 145, 182, 344, 407, 495
CviJI RGCY 9 cut(s) 35, 60, 115, 167, 212, 218, 245, 276, 467
CviKI_1 RGCY 9 cut(s) 35, 60, 115, 167, 212, 218, 245, 276, 467
CviQI GTAC 2 cut(s) 157, 312
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 96, 226
DpnII GATC 2 cut(s) 94, 224
EaeI YGGCCR 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 66, 291
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 5 cut(s) 148, 185, 347, 410, 498
FaiI YATR 6 cut(s) 146, 151, 183, 345, 408, 496
FatI CATG 5 cut(s) 144, 181, 343, 406, 494
FokI GGATG 1 cut(s) 161
HaeIII GGCC 3 cut(s) 115, 212, 218
Hin1II CATG 5 cut(s) 148, 185, 347, 410, 498
HphI GGTGA 3 cut(s) 34, 439, 466
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 336, 487
Hpy188III TCNNGA 6 cut(s) 40, 98, 222, 236, 304, 495
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 87, 266, 289
HpyCH4V TGCA 2 cut(s) 181, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 5 cut(s) 148, 185, 347, 410, 498
Kzo9I GATC 2 cut(s) 94, 224
LmnI GCTCC 2 cut(s) 281, 464
LpnPI CCDG 9 cut(s) 53, 53, 74, 80, 97, 191, 278, 305, 461
LweI GCATC 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 286, 427
MalI GATC 2 cut(s) 96, 226
MboI GATC 2 cut(s) 94, 224
MboII GAAGA 4 cut(s) 37, 82, 146, 149
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 1 cut(s) 128
MnlI CCTC 4 cut(s) 10, 229, 379, 385
MspR9I CCNGG 2 cut(s) 68, 293
MvaI CCWGG 2 cut(s) 68, 293
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 94, 224
NlaIII CATG 5 cut(s) 148, 185, 347, 410, 498
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 286, 427
NspI RCATGY 2 cut(s) 148, 185
PaeI GCATGC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 304
PagI TCATGA 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 66, 291
PspGI CCWGG 2 cut(s) 66, 291
PspN4I GGNNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 2 cut(s) 158, 313
RsaNI GTAC 2 cut(s) 157, 312
Sau3AI GATC 2 cut(s) 94, 224
ScaI AGTACT 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 68, 293
SduI GDGCHC 1 cut(s) 363
SetI ASST 6 cut(s) 37, 79, 278, 371, 462, 469
SfaNI GCATC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 2 cut(s) 220, 304
SmoI CTYRAG 2 cut(s) 220, 304
SphI GCATGC 1 cut(s) 185
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 410
SspI AATATT 2 cut(s) 340, 403
StyD4I CCNGG 2 cut(s) 66, 291
StyI CCWWGG 1 cut(s) 460
TaqI TCGA 4 cut(s) 93, 99, 305, 416
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 311
TseFI GTSAC 2 cut(s) 286, 427
Tsp45I GTSAC 2 cut(s) 286, 427
TspDTI ATGAA 3 cut(s) 332, 395, 483
XapI RAATTY 1 cut(s) 128
XceI RCATGY 2 cut(s) 148, 185
XhoI CTCGAG 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.