Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002160

Physical Location & Seq

Genomic Coordinates Reverse (-)

65845809 .. 65847799

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTTCGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGTTGGAACCTCCCCCCAATCATCATGTTACAAACCCTCAATCCCAACCTCCCAATTCTCCACTTTGGCCGTCGATGGCCTCTCTTCAGTGGTTCCATTGCAACCCATTTCCGGACACTCAGGGGTTTTGACATTCGATAAAATTCGAGGCAATATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACTAATGACTTCAGCTTTAAGTACATTCAAAGGCTGGTGGACAAATTCCCTCCTGTAAAAGCATTTCATTTTGTCCTTGACGACAATGATAAGGATTCATCTTATGATGTCACAATGAGAACGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATGAAGGCGTAGTTCGAAGACGGAACGAGGAGGAAAGAAAAAAGCCTATGATGAGCATTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGACTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGAGTGGCCGGTGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.1

Weight (kDa)

9.24

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148221 RchiOBHm_Chr2g0148231 RchiOBHm_Chr3g0492741 RchiOBHm_Chr3g0492821 RchiOBHm_Chr3g0492851 RchiOBHm_Chr3g0492941 RchiOBHm_MTg0498311
rosa_laevigata	RLG00000000352 RLG00000000381 RLG00000000382 RLG00000000397 RLG00000000398 RLG00000020328 RLG00000022742 RLG00000022743 RLG00000022747 RLG00000022749
rosa_multiflora	Rmu_co8117328.1_g000001 Rmu_sc0000927.1_g000019 Rmu_sc0002583.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098980 Rroxscaffold_6G00392020 Rroxscaffold_6G00392080
rosa_rugosa	Rorug02G0404600 Rorug02G0404700 Rorug03G0256700 Rorug03G0256800 Rorug03G0257700 Rorug03G0257900 Rorug03G0258200
rosa_samantha	Rh2AG463200 Rh2BG476400 Rh2CG450000 Rh2DG485100 Rh3AG306300 Rh3AG306700 Rh3AG306900 Rh3AG307200 Rh3DG346800 Rh3DG347000 Rh3DG347300
rosa_wichuraiana	Rw2G037770 Rw3G026950 Rw3G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	149
AclI	AACGTT	1 cut(s)	356
AcoI	YGGCCR	2 cut(s)	105, 785
AcsI	RAATTY	3 cut(s)	180, 278, 699
AcuI	CTGAAG	3 cut(s)	108, 229, 660
AfaI	GTAC	2 cut(s)	257, 648
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	652
AgsI	TTSAA	5 cut(s)	263, 361, 369, 445, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	583, 615
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	5 cut(s)	34, 249, 418, 422, 638
AluI	AGCT	5 cut(s)	34, 249, 418, 422, 638
Alw26I	GTCTC	1 cut(s)	710
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	3 cut(s)	105, 115, 785
ApeKI	GCWGC	2 cut(s)	34, 222
ApoI	RAATTY	3 cut(s)	180, 278, 699
AspS9I	GGNCC	1 cut(s)	690
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	526
AsuNHI	GCTAGC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	21, 209
BccI	CCATC	2 cut(s)	107, 749
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	2 cut(s)	419, 618
BfmI	CTRYAG	1 cut(s)	720
BfrI	CTTAAG	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	2 cut(s)	35, 223
BlsI	GCNGC	2 cut(s)	36, 224
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	4 cut(s)	46, 132, 691, 692
BmsI	GCATC	2 cut(s)	498, 667
BmtI	GCTAGC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	787
Bse1I	ACTGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	2 cut(s)	428, 554
BseXI	GCAGC	2 cut(s)	21, 209
BshFI	GGCC	3 cut(s)	107, 117, 787
BsiSI	CCGG	2 cut(s)	150, 788
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	703
BsmI	GAATGC	2 cut(s)	24, 631
BsnI	GGCC	3 cut(s)	107, 117, 787
Bsp119I	TTCGAA	1 cut(s)	526
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	593
BspANI	GGCC	3 cut(s)	107, 117, 787
BspCNI	CTCAG	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	46, 132, 691, 692
BspOI	GCTAGC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	526
BspTI	CTTAAG	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	787
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	787
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	652
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	213, 420, 707
BstDEI	CTNAG	4 cut(s)	157, 631, 756, 774
BstKTI	GATC	1 cut(s)	596
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	1 cut(s)	593
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 635
BstNSI	RCATGY	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	21, 209
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	107, 117, 787
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	213, 420, 707
Cfr10I	RCCGGY	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	256, 647
CviAII	CATG	3 cut(s)	63, 512, 706
CviQI	GTAC	2 cut(s)	256, 647
DdeI	CTNAG	4 cut(s)	157, 631, 756, 774
DpnI	GATC	1 cut(s)	595
DpnII	GATC	1 cut(s)	593
EaeI	YGGCCR	2 cut(s)	105, 785
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	690
Eco57I	CTGAAG	3 cut(s)	108, 229, 660
EcoO109I	RGGNCCY	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	66, 515, 709
FaiI	YATR	9 cut(s)	64, 231, 339, 432, 513, 560, 573, 575, 707
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	3 cut(s)	62, 511, 705
Fnu4HI	GCNGC	2 cut(s)	35, 223
Fsp4HI	GCNGC	2 cut(s)	35, 223
FspBI	CTAG	2 cut(s)	419, 618
GluI	GCNGC	2 cut(s)	35, 223
HaeIII	GGCC	3 cut(s)	107, 117, 787
HapII	CCGG	2 cut(s)	150, 788
Hin1II	CATG	3 cut(s)	66, 515, 709
HinfI	GANTC	3 cut(s)	329, 577, 793
HpaII	CCGG	2 cut(s)	150, 788
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188III	TCNNGA	5 cut(s)	150, 197, 445, 455, 476
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	139, 211, 511, 680, 705, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 635
HpyF3I	CTNAG	4 cut(s)	157, 631, 756, 774
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	66, 515, 709
KflI	GGGWCCC	1 cut(s)	690
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	593
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	21, 209
LweI	GCATC	2 cut(s)	498, 667
MaeI	CTAG	2 cut(s)	419, 618
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	65, 343
MalI	GATC	1 cut(s)	595
MboI	GATC	1 cut(s)	593
MboII	GAAGA	3 cut(s)	114, 540, 671
MflI	RGATCY	1 cut(s)	593
MluCI	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
MmeI	TCCRAC	1 cut(s)	22
Mph1103I	ATGCAT	1 cut(s)	513
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	4 cut(s)	252, 609, 653, 750
MslI	CAYNNNNRTG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	652
MspI	CCGG	2 cut(s)	150, 788
Mva1269I	GAATGC	2 cut(s)	24, 631
MwoI	GCNNNNNNNGC	2 cut(s)	231, 635
NdeII	GATC	1 cut(s)	593
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	66, 515, 709
NlaIV	GGNNCC	4 cut(s)	46, 132, 691, 692
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	709
PctI	GAATGC	2 cut(s)	24, 631
PfeI	GAWTC	3 cut(s)	329, 577, 793
PkrI	GCNGC	2 cut(s)	36, 224
PpuMI	RGGWCCY	1 cut(s)	690
Psp1406I	AACGTT	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	690
PspN4I	GGNNCC	4 cut(s)	46, 132, 691, 692
PspPI	GGNCC	1 cut(s)	690
PspPPI	RGGWCCY	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	2 cut(s)	257, 648
RsaNI	GTAC	2 cut(s)	256, 647
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	4 cut(s)	252, 609, 653, 750
SatI	GCNGC	2 cut(s)	35, 223
Sau3AI	GATC	1 cut(s)	593
Sau96I	GGNCC	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	498, 667
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	474, 652
SmoI	CTYRAG	2 cut(s)	474, 652
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	2 cut(s)	419, 618
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	6 cut(s)	8, 111, 174, 184, 196, 526
TasI	AATT	6 cut(s)	92, 180, 278, 581, 598, 699
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	329, 577, 793
Tru1I	TTAA	4 cut(s)	252, 609, 653, 750
Tru9I	TTAA	4 cut(s)	252, 609, 653, 750
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	34, 222
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	290, 321, 528, 590
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	3 cut(s)	180, 278, 699
XceI	RCATGY	1 cut(s)	709
XspI	CTAG	2 cut(s)	419, 618
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.