RchiOBHm_Chr2g0153701

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005236
Physical Location & Seq
Reverse (-)
71002678 .. 71003279
602 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGAGTTCCAGCACTAATTCCGCAGCAGCGTACACTGCTCCGGCTTCGCAACCGGGACCTTACGTCCAGGCTCCGCCTCCTGCCGGCTATCCCACCATGAGAGACGACTCCGATTTGCCCCAGATTCATGGTCGTGTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGTGTTGCTGTTGTATGCTCGATGCTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

73

Amino Acids

7.64

Weight (kDa)

5.48

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 21 - 73 1.3e-11 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 74
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 83
AhdI GACNNNNNGTC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 96
ApeKI GCWGC 4 cut(s) 23, 26, 174, 182
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 4 cut(s) 35, 38, 161, 169
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 96
BisI GCNGC 4 cut(s) 24, 27, 175, 183
BlsI GCNGC 4 cut(s) 25, 28, 176, 184
Bme1390I CCNGG 2 cut(s) 54, 68
Bme18I GGWCC 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 57, 72
BmrFI CCNGG 2 cut(s) 54, 68
BmsI GCATC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 83
BseXI GCAGC 4 cut(s) 35, 38, 161, 169
BsiSI CCGG 3 cut(s) 41, 53, 84
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 69
BspACI CCGC 2 cut(s) 21, 74
BspLI GGNNCC 2 cut(s) 57, 72
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 85, 214
BstMAI GTCTC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 52, 66
BstV1I GCAGC 4 cut(s) 35, 38, 161, 169
BstXI CCANNNNNNTGG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 85, 214
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 97, 128
CviJI RGCY 5 cut(s) 44, 71, 87, 162, 174
CviKI_1 RGCY 5 cut(s) 44, 71, 87, 162, 174
CviQI GTAC 1 cut(s) 31
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 2 cut(s) 100, 131
FaiI YATR 3 cut(s) 98, 129, 203
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 96, 127
Fnu4HI GCNGC 4 cut(s) 24, 27, 175, 183
Fsp4HI GCNGC 4 cut(s) 24, 27, 175, 183
GluI GCNGC 4 cut(s) 24, 27, 175, 183
HapII CCGG 3 cut(s) 41, 53, 84
Hin1II CATG 2 cut(s) 100, 131
HinfI GANTC 2 cut(s) 107, 124
HpaII CCGG 3 cut(s) 41, 53, 84
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 100, 131
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 43, 76
LpnPI CCDG 9 cut(s) 22, 53, 54, 66, 80, 93, 97, 134, 151
Lsp1109I GCAGC 4 cut(s) 35, 38, 161, 169
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 63
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 87
MroNI GCCGGC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 41, 53, 84
MspR9I CCNGG 2 cut(s) 54, 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 35
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 54
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 100, 131
NlaIV GGNNCC 2 cut(s) 57, 72
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 25, 28, 176, 184
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 57, 72
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 4 cut(s) 24, 27, 175, 183
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 54, 68
SetI ASST 2 cut(s) 61, 66
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 21, 74
StyD4I CCNGG 2 cut(s) 52, 66
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 16
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 40
TseI GCWGC 4 cut(s) 23, 26, 174, 182
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.