RchiOBHm_Chr1g0320981

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003959
Physical Location & Seq
Reverse (-)
8472404 .. 8475323
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGGTACTTGAGGCTGATGTTGCTGTTGTTCCGAAATGCTACTTGAGTGCTTTGTATATACATGAAAAGGGGAAGCTCTTTACCCAACTTGTTGACTTGCTGCAGTTTTATGAAGGATTTGAGATTAATGATAATGTTGGGAAACAATTGACGGATGATGAAGTGCTCCAATCTCATTATGATCGCGTACAATCTTTTCAGCTGCTTGCTTTTACAAAGATTCCTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

77

Amino Acids

8.88

Weight (kDa)

4.88

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 5 - 77 3.9e-23 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AfaI GTAC 2 cut(s) 6, 189
AluBI AGCT 2 cut(s) 76, 202
AluI AGCT 2 cut(s) 76, 202
Alw21I GWGCWC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 100, 202
AseI ATTAAT 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 87, 189
BfmI CTRYAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 101, 203
BlsI GCNGC 2 cut(s) 102, 204
BpuEI CTTGAG 2 cut(s) 29, 64
BseGI GGATG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 87, 189
Bsh1236I CGCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 181
BspFNI CGCG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 105
BssMI GATC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 87, 189
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 5, 188
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 14, 76, 202
CviKI_1 RGCY 3 cut(s) 14, 76, 202
CviQI GTAC 2 cut(s) 5, 188
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 57, 59, 63, 111, 180
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 101, 203
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 101, 203
GluI GCNGC 2 cut(s) 101, 203
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 2 cut(s) 87, 189
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MfeI CAATTG 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 146
MnlI CCTC 1 cut(s) 4
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 202
MunI CAATTG 1 cut(s) 146
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 65
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 102, 204
PshBI ATTAAT 1 cut(s) 126
PstI CTGCAG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 6, 189
RsaNI GTAC 2 cut(s) 5, 188
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 101, 203
Sau3AI GATC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 168
SetI ASST 2 cut(s) 78, 204
SfcI CTRYAG 1 cut(s) 101
SgeI CNNG 7 cut(s) 20, 55, 74, 101, 109, 197, 218
SmlI CTYRAG 2 cut(s) 8, 43
SmoI CTYRAG 2 cut(s) 8, 43
Sse9I AATT 1 cut(s) 146
TasI AATT 1 cut(s) 146
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 100, 202
TspDTI ATGAA 3 cut(s) 78, 126, 174
TspGWI ACGGA 1 cut(s) 167
VspI ATTAAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.