Rh1DG026600

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003959
Physical Location & Seq
Forward (+)
4081197 .. 4082588
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG026600.1

Sequence Viewer

Length: 402 bp
ATGACGAAGGCGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTACCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGAGAAGCCGGTGGAGGCTAAACCCGGCGCCGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCGATTGGTCCAAAGCCAGCGGGGAAGAAGGCGTTCGACGTGGAGCTGGTGAAGAAGATTTACTGTGGAATATGGTACTGGTACTTGAGGCCACTTTTGCAACAGCTTGCATTGGTTCAATTGACAACCGAAATGATCTCTCTAAAAGATTGTCTGTACTTTCTCCTGAAGAATTGAAGGATTTGGTTTGTTCAAAGGCATGTGATAAAAGGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

133

Amino Acids

14.62

Weight (kDa)

5.12

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccII CGCG 2 cut(s) 26, 119
AciI CCGC 3 cut(s) 117, 177, 201
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 6 cut(s) 14, 29, 59, 258, 264, 339
AgsI TTSAA 4 cut(s) 37, 300, 358, 375
AjiI CACGTC 1 cut(s) 221
AluBI AGCT 6 cut(s) 70, 82, 129, 163, 227, 287
AluI AGCT 6 cut(s) 70, 82, 129, 163, 227, 287
Alw21I GWGCWC 1 cut(s) 131
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 121, 179
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 4 cut(s) 26, 42, 116, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 108, 166
BcnI CCSGG 2 cut(s) 62, 111
BfoI RGCGCY 2 cut(s) 43, 117
BisI GCNGC 4 cut(s) 117, 122, 177, 180
BlsI GCNGC 4 cut(s) 118, 123, 178, 181
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 2 cut(s) 115, 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 62, 111
BsaHI GRCGYC 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 108, 166
Bsh1236I CGCG 2 cut(s) 26, 119
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 62, 95, 111
BsiWI CGTACG 2 cut(s) 12, 27
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 3 cut(s) 117, 177, 201
BspANI GGCC 1 cut(s) 272
BspFNI CGCG 2 cut(s) 26, 119
BspLI GGNNCC 2 cut(s) 115, 158
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 199, 289
BstFNI CGCG 2 cut(s) 26, 119
BstH2I RGCGCY 2 cut(s) 43, 117
BstHHI GCGC 4 cut(s) 26, 42, 116, 121
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 2 cut(s) 26, 119
BstV1I GCAGC 2 cut(s) 108, 166
BsuRI GGCC 1 cut(s) 272
BtrI CACGTC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 199, 289
CfoI GCGC 4 cut(s) 26, 42, 116, 121
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 157, 189
Csp6I GTAC 6 cut(s) 13, 28, 58, 257, 263, 338
CviAII CATG 2 cut(s) 47, 381
CviQI GTAC 6 cut(s) 13, 28, 58, 257, 263, 338
DinI GGCGCC 1 cut(s) 115
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
FaeI CATG 2 cut(s) 50, 384
FaiI YATR 4 cut(s) 48, 170, 254, 382
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 46, 380
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 4 cut(s) 117, 122, 177, 180
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 4 cut(s) 117, 122, 177, 180
GlaI GCGC 4 cut(s) 25, 41, 115, 120
GluI GCNGC 4 cut(s) 117, 122, 177, 180
HaeII RGCGCY 2 cut(s) 43, 117
HaeIII GGCC 1 cut(s) 272
HapII CCGG 3 cut(s) 62, 95, 111
HhaI GCGC 4 cut(s) 26, 42, 116, 121
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 50, 384
Hin6I GCGC 4 cut(s) 24, 40, 114, 119
HinP1I GCGC 4 cut(s) 24, 40, 114, 119
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 62, 95, 111
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 86, 145, 153
Hpy188III TCNNGA 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 203, 352
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 281, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 50, 384
HspAI GCGC 4 cut(s) 24, 40, 114, 119
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 67, 224
Lsp1109I GCAGC 2 cut(s) 108, 166
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 4 cut(s) 218, 245, 248, 362
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 300, 353
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 94, 147, 262
MroXI GAANNNNTTC 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 179, 201
MspI CCGG 3 cut(s) 62, 95, 111
MspR9I CCNGG 2 cut(s) 62, 111
MteI GCGCNGCGC 1 cut(s) 117
MunI CAATTG 1 cut(s) 300
MvnI CGCG 2 cut(s) 26, 119
MwoI GCNNNNNNNGC 1 cut(s) 278
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 50, 384
NlaIV GGNNCC 2 cut(s) 115, 158
NmeAIII GCCGAG 1 cut(s) 150
NspI RCATGY 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 2 cut(s) 12, 27
PkrI GCNGC 4 cut(s) 118, 123, 178, 181
PluTI GGCGCC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 2 cut(s) 12, 27
PspN4I GGNNCC 2 cut(s) 115, 158
PspPI GGNCC 2 cut(s) 157, 189
RsaI GTAC 6 cut(s) 14, 29, 59, 258, 264, 339
RsaNI GTAC 6 cut(s) 13, 28, 58, 257, 263, 338
SacI GAGCTC 1 cut(s) 131
SatI GCNGC 4 cut(s) 117, 122, 177, 180
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 1 cut(s) 131
SetI ASST 7 cut(s) 72, 84, 131, 165, 223, 229, 289
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 2 cut(s) 157, 189
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 300, 353
SsiI CCGC 3 cut(s) 117, 177, 201
SspDI GGCGCC 1 cut(s) 113
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 131, 217
TasI AATT 2 cut(s) 300, 353
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 119, 179
TfiI GAWTC 1 cut(s) 148
TseI GCWGC 2 cut(s) 121, 179
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 157, 189
XceI RCATGY 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.