Rmu_sc0019966.1_g000002

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019966.1
OG0003959
Physical Location & Seq
Forward (+)
936 .. 1274
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019966.1_g000002.1.cds

Sequence Viewer

Length: 339 bp
atgattgccgctgcgaattggtccaaagctggcggcgacgccgtgcaggtgaagaaggcgttcgacacggagctggtgaagatgatttacgagacggagttgtgtgtgaaggaggggcagaggaagacggtgccgttgctgagagtgatgattttggaggtcagccagtatttggagaactatcactttcccaatttcgatcccgaaacggcgacgttcaagcacgttatgtccatgattctcatggtcaatgagaaggtattgccttttggaactgcagtatttacttatggtcacactagggtcagaaaactagtccaagtagtttttatgcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

112

Amino Acids

12.85

Weight (kDa)

8.74

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 2 cut(s) 9, 33
AclWI GGATC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 220
AhlI ACTAGT 1 cut(s) 313
AluBI AGCT 2 cut(s) 29, 73
AluI AGCT 2 cut(s) 29, 73
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 61, 88
AvaII GGWCC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 130
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 131
BceAI ACGGC 3 cut(s) 26, 118, 225
BcoDI GTCTC 1 cut(s) 86
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 2 cut(s) 300, 314
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 3 cut(s) 9, 12, 34
BlsI GCNGC 3 cut(s) 10, 13, 35
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 9, 33
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 166
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 140
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 131
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 47
CviAII CATG 2 cut(s) 235, 244
CviJI RGCY 3 cut(s) 29, 73, 165
CviKI_1 RGCY 3 cut(s) 29, 73, 165
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 238, 247
FaiI YATR 5 cut(s) 230, 236, 245, 291, 332
FatI CATG 2 cut(s) 234, 243
Fnu4HI GCNGC 3 cut(s) 9, 12, 34
Fsp4HI GCNGC 3 cut(s) 9, 12, 34
FspBI CTAG 2 cut(s) 300, 314
GluI GCNGC 3 cut(s) 9, 12, 34
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 238, 247
HinfI GANTC 1 cut(s) 238
HphI GGTGA 2 cut(s) 61, 88
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 2 cut(s) 41, 217
HpyAV CCTTC 3 cut(s) 49, 103, 250
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 215, 225
HpyCH4V TGCA 3 cut(s) 46, 278, 334
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 215, 225
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 238, 247
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 15, 32, 59, 179
MaeI CTAG 2 cut(s) 300, 314
MaeII ACGT 2 cut(s) 215, 225
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 64, 91, 136
MluCI AATT 2 cut(s) 16, 193
MnlI CCTC 3 cut(s) 106, 114, 151
Mph1103I ATGCAT 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 11
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 238, 247
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 3 cut(s) 10, 13, 35
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 21
PstI CTGCAG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 3 cut(s) 9, 12, 34
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 21
SetI ASST 7 cut(s) 31, 51, 75, 162, 218, 228, 261
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 21
SpeI ACTAGT 1 cut(s) 313
Sse9I AATT 2 cut(s) 16, 193
SsiI CCGC 2 cut(s) 9, 33
SspMI CTAG 2 cut(s) 300, 314
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 218, 228
TaqI TCGA 2 cut(s) 63, 198
TasI AATT 2 cut(s) 16, 193
TauI GCSGC 2 cut(s) 11, 36
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 83, 110
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 2 cut(s) 300, 314
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.