Rh1DG049200

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003959
Physical Location & Seq
Reverse (-)
7996062 .. 7997433
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG049200.1

Sequence Viewer

Length: 558 bp
ATGACCAAGGTGTACGGAACAGGCGCGTACGATTTCAAGTGCCACCATGTTGCAGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGACAAGCCGGTGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCGGCGGCGGGGACGCCGCTCAGGTGAAGAAGGCGTTCGACGCGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACAGTGCCATTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTGGAGAACTATCTCATTCCCAATTTTGATCCCGAAACGGCGACGTTCGAGCACGTTATGTCCATGATTCTCATGGTCAATGAGAAGTTTCGAGAGAATGTGGCAGCTTGGGTATGCTTTCATGACCGGAAGATGCGTTTAAAGGATTCCTTGGAAGGGTTCTTCGCCTTAAATCGGTTTGTGCCCATTTTCTCTGCTTTAACATATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

185

Amino Acids

20.93

Weight (kDa)

6.22

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 56 - 164 5e-29 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 218
AccII CGCG 2 cut(s) 26, 242
AciI CCGC 6 cut(s) 119, 180, 204, 207, 216, 242
AclWI GGATC 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 4 cut(s) 14, 29, 59, 344
AfiI CCNNNNNNNGG 4 cut(s) 207, 346, 501, 519
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 6 cut(s) 70, 82, 132, 166, 247, 452
AluI AGCT 6 cut(s) 70, 82, 132, 166, 247, 452
Alw21I GWGCWC 2 cut(s) 134, 399
Alw26I GTCTC 2 cut(s) 81, 260
AlwI GGATC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 124, 182, 449
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 26, 124
AspS9I GGNCC 2 cut(s) 160, 192
AsuC2I CCSGG 2 cut(s) 62, 114
AsuHPI GGTGA 2 cut(s) 235, 262
AvaII GGWCC 2 cut(s) 160, 192
BaeGI GKGCMC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 134, 399
BbvI GCAGC 3 cut(s) 111, 169, 461
BceAI ACGGC 1 cut(s) 399
BcnI CCSGG 2 cut(s) 62, 114
BcoDI GTCTC 2 cut(s) 81, 260
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 7 cut(s) 120, 125, 180, 183, 205, 216, 450
BlsI GCNGC 7 cut(s) 121, 126, 181, 184, 206, 217, 451
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 62, 114
Bme18I GGWCC 2 cut(s) 160, 192
BmgT120I GGNCC 2 cut(s) 160, 192
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 62, 114
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 62, 114
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 6, 495
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 346, 501, 519
Bse118I RCCGGY 2 cut(s) 94, 200
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 6, 495
BseLI CCNNNNNNNGG 4 cut(s) 207, 346, 501, 519
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 3 cut(s) 111, 169, 461
Bsh1236I CGCG 2 cut(s) 26, 242
BsiHKAI GWGCWC 2 cut(s) 134, 399
BsiSI CCGG 5 cut(s) 62, 95, 114, 201, 472
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 173, 224
BslI CCNNNNNNNGG 4 cut(s) 207, 346, 501, 519
BsmAI GTCTC 2 cut(s) 81, 260
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 173, 224
Bsp1286I GDGCHC 3 cut(s) 134, 399, 531
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 6 cut(s) 119, 180, 204, 207, 216, 242
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 2 cut(s) 26, 242
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 308
BsrFI RCCGGY 2 cut(s) 94, 200
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 2 cut(s) 94, 200
BssECI CCNNGG 2 cut(s) 6, 495
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 6, 495
Bst4CI ACNGT 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 219
BstFNI CGCG 2 cut(s) 26, 242
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 26, 124
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 2 cut(s) 81, 260
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 60, 112
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 2 cut(s) 26, 242
BstV1I GCAGC 3 cut(s) 111, 169, 461
BstV2I GAAGAC 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 202
CciI TCATGA 1 cut(s) 466
CfoI GCGC 2 cut(s) 26, 124
Cfr10I RCCGGY 2 cut(s) 94, 200
Cfr13I GGNCC 2 cut(s) 160, 192
CseI GACGC 2 cut(s) 221, 248
Csp6I GTAC 4 cut(s) 13, 28, 58, 343
CviAII CATG 4 cut(s) 47, 409, 418, 467
CviQI GTAC 4 cut(s) 13, 28, 58, 343
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DraI TTTAAA 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 6, 495
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 160, 192
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 6, 495
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 6, 495
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 4 cut(s) 50, 412, 421, 470
FaiI YATR 8 cut(s) 48, 173, 404, 410, 419, 460, 468, 550
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 2 cut(s) 173, 224
FatI CATG 4 cut(s) 46, 408, 417, 466
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 7 cut(s) 120, 125, 180, 183, 205, 216, 450
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 7 cut(s) 120, 125, 180, 183, 205, 216, 450
GlaI GCGC 2 cut(s) 25, 123
GluI GCNGC 7 cut(s) 120, 125, 180, 183, 205, 216, 450
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 5 cut(s) 62, 95, 114, 201, 472
HgaI GACGC 2 cut(s) 221, 248
HhaI GCGC 2 cut(s) 26, 124
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 4 cut(s) 50, 412, 421, 470
Hin6I GCGC 2 cut(s) 24, 122
HinP1I GCGC 2 cut(s) 24, 122
HinfI GANTC 3 cut(s) 151, 412, 491
HpaII CCGG 5 cut(s) 62, 95, 114, 201, 472
HphI GGTGA 2 cut(s) 235, 262
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 86, 148, 156
Hpy188III TCNNGA 3 cut(s) 377, 437, 467
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 242, 391
HpyAV CCTTC 3 cut(s) 223, 277, 494
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 389, 399
HpyCH4V TGCA 2 cut(s) 53, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 2 cut(s) 389, 399
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 4 cut(s) 50, 412, 421, 470
HspAI GCGC 2 cut(s) 24, 122
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 67, 244
Lsp1109I GCAGC 3 cut(s) 111, 169, 461
LweI GCATC 1 cut(s) 468
MaeII ACGT 2 cut(s) 389, 399
MalI GATC 1 cut(s) 375
MbiI CCGCTC 1 cut(s) 218
MboI GATC 1 cut(s) 373
MboII GAAGA 6 cut(s) 238, 265, 268, 310, 487, 499
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 134, 399, 531
MluCI AATT 2 cut(s) 187, 367
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 97, 150, 280, 288, 325
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 4 cut(s) 485, 515, 545, 556
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 5 cut(s) 62, 95, 114, 201, 472
MspR9I CCNGG 2 cut(s) 62, 114
MunI CAATTG 1 cut(s) 187
MvnI CGCG 2 cut(s) 26, 242
MwoI GCNNNNNNNGC 1 cut(s) 239
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 62, 114
NdeII GATC 1 cut(s) 373
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 4 cut(s) 50, 412, 421, 470
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 153
PagI TCATGA 1 cut(s) 466
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 3 cut(s) 151, 412, 491
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 7 cut(s) 121, 126, 181, 184, 206, 217, 451
Psp124BI GAGCTC 1 cut(s) 134
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 160, 192
RsaI GTAC 4 cut(s) 14, 29, 59, 344
RsaNI GTAC 4 cut(s) 13, 28, 58, 343
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 4 cut(s) 485, 515, 545, 556
SatI GCNGC 7 cut(s) 120, 125, 180, 183, 205, 216, 450
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 160, 192
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 62, 114
SduI GDGCHC 3 cut(s) 134, 399, 531
SfaNI GCATC 1 cut(s) 468
SinI GGWCC 2 cut(s) 160, 192
Sse9I AATT 2 cut(s) 187, 367
SsiI CCGC 6 cut(s) 119, 180, 204, 207, 216, 242
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 60, 112
StyI CCWWGG 2 cut(s) 6, 495
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 392, 402
TaqI TCGA 4 cut(s) 134, 237, 393, 436
TasI AATT 2 cut(s) 187, 367
TatI WGTACW 1 cut(s) 342
TauI GCSGC 4 cut(s) 122, 182, 207, 218
TfiI GAWTC 3 cut(s) 151, 412, 491
Tru1I TTAA 4 cut(s) 485, 515, 545, 556
Tru9I TTAA 4 cut(s) 485, 515, 545, 556
TscAI CASTG 1 cut(s) 309
TseI GCWGC 3 cut(s) 124, 182, 449
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 2 cut(s) 30, 284
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 160, 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.