Rh1CG044200

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003959
Physical Location & Seq
Reverse (-)
8348953 .. 8353738
4786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG044200.1

Sequence Viewer

Length: 507 bp
ATGGTACTTGAGGCTGATGTTGCTGTTGTTCCGAAATGCCACTTGAGTGCTTTGTATATACATGAAAAGGGGAAGCTCTTTACCCAACTTGTTGACTTGCTGCAGTTTTATGAAGGATTTGAGATTAATGATAATGTTGGGAAACAATTGACGGATGATGAAGTGCTCCAATCTCATTATGATCGCGTACAATCTTTTCAGTTGCTTGCTTTTACAAAGATTCCTAAGTTGCAACAGCTTGCATTGGTTCAATTGACAACCAAAATGATCTCTCTAAAAGATTATGTCTCCAGCCAATTCGGATTTGGATTTGAGGTTGCTGATAACTTGCTTCATGAAGCCACTAGGAATCTAGAAAGTTTGATATTTTTCTCCCAGACCCTTAGAAGCAAGAAAGATATTCAAGGGAGGCTTGACAAAGAACAAGCAGTTCTTTACTTTGCTCAACTCACCGGCATTGCAAAGGGTGACAAGTTGTTGGCGTCTCAAAATGCACAGCCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

168

Amino Acids

19.0

Weight (kDa)

5.78

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 5 - 86 3e-25 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 2 cut(s) 6, 189
AgsI TTSAA 2 cut(s) 251, 404
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 2 cut(s) 76, 238
AluI AGCT 2 cut(s) 76, 238
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 292, 489
ApeKI GCWGC 1 cut(s) 100
AseI ATTAAT 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 442, 479
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 292, 489
BfaI CTAG 2 cut(s) 345, 353
BfmI CTRYAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 29, 64
BsaHI GRCGYC 1 cut(s) 482
Bse118I RCCGGY 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 456
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 456
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 292, 489
BsmBI CGTCTC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 181, 267
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 452
BssMI GATC 2 cut(s) 181, 267
BssNI GRCGYC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 207, 240
BstDEI CTNAG 2 cut(s) 225, 383
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 2 cut(s) 184, 270
BstMAI GTCTC 2 cut(s) 292, 489
BstMBI GATC 2 cut(s) 181, 267
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 207, 240
CciI TCATGA 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 452
CseI GACGC 1 cut(s) 471
Csp6I GTAC 2 cut(s) 5, 188
CviAII CATG 2 cut(s) 62, 335
CviJI RGCY 7 cut(s) 14, 76, 238, 294, 341, 412, 499
CviKI_1 RGCY 7 cut(s) 14, 76, 238, 294, 341, 412, 499
CviQI GTAC 2 cut(s) 5, 188
DdeI CTNAG 2 cut(s) 225, 383
DpnI GATC 2 cut(s) 183, 269
DpnII GATC 2 cut(s) 181, 267
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 65, 338
FaiI YATR 8 cut(s) 57, 59, 63, 111, 180, 285, 336, 505
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 417, 449
FatI CATG 2 cut(s) 61, 334
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 2 cut(s) 345, 353
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 274
HapII CCGG 1 cut(s) 453
HgaI GACGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 65, 338
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 220, 349
HpaII CCGG 1 cut(s) 453
HphI GGTGA 2 cut(s) 442, 479
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 33, 302
Hpy188III TCNNGA 2 cut(s) 335, 353
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 103, 232, 242, 461, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 225, 383
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 65, 338
Kzo9I GATC 2 cut(s) 181, 267
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 304, 389, 466
Lsp1109I GCAGC 1 cut(s) 87
MaeI CTAG 2 cut(s) 345, 353
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 183, 269
MboI GATC 2 cut(s) 181, 267
MfeI CAATTG 2 cut(s) 146, 251
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 3 cut(s) 146, 251, 296
MnlI CCTC 3 cut(s) 4, 307, 402
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 1 cut(s) 453
MunI CAATTG 2 cut(s) 146, 251
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 2 cut(s) 181, 267
NlaIII CATG 2 cut(s) 65, 338
NmuCI GTSAC 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 45
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 2 cut(s) 220, 349
PkrI GCNGC 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 126
PstI CTGCAG 1 cut(s) 105
RsaI GTAC 2 cut(s) 6, 189
RsaNI GTAC 2 cut(s) 5, 188
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 181, 267
SduI GDGCHC 1 cut(s) 168
SetI ASST 3 cut(s) 78, 240, 318
SfcI CTRYAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 8, 43
SmoI CTYRAG 2 cut(s) 8, 43
Sse9I AATT 3 cut(s) 146, 251, 296
SspMI CTAG 2 cut(s) 345, 353
TasI AATT 3 cut(s) 146, 251, 296
TfiI GAWTC 2 cut(s) 220, 349
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 5 cut(s) 78, 126, 174, 323, 351
TspGWI ACGGA 1 cut(s) 167
VspI ATTAAT 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 2 cut(s) 345, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.