Rh1CG043700

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003959
Physical Location & Seq
Reverse (-)
8162249 .. 8163190
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG043700.1

Sequence Viewer

Length: 582 bp
ATGACGAAGGTGTACGGAACAGGCGCGTACGATCTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGACAAGCCGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTGAGAGGGACCAGCTCACTATGACTGCCGCTGCCAATTGGTCCAAAGCCGGCGGGCAGGTGAAGAATGGTTTGTGTATGTTATACTTCACTGAATGTGTATCTGCCCGTATATCCAAGTACTTGAGGCCACTTGTTGCTGATGTTGCTGTTGTTCCGAAATGCCACTTGAGTGCTTTGTATATACATGAAAAGAGGAAGCTCTTTACCCAACTTGTTGACTTGCTGCACTTTTATGAAGGATTTGAGATTAATGATAATGTTGGGAAACAATTGACGGATGATGAAGTGCTCCAATCTCATTATGATCGCGTACAATCTTTTCAGCTGCTTGCTTTTAAAAAAATTCCTAAGTTGCAACAGCTTGCATTGGTTCAATTGACAACCGAAATGATCTCTGTGAAAGATTGGCTGTACTTTCCCCTGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

193

Amino Acids

21.9

Weight (kDa)

7.73

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 89 - 176 1.2e-27 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 2 cut(s) 26, 459
AciI CCGC 3 cut(s) 116, 177, 201
AcsI RAATTY 1 cut(s) 492
AfaI GTAC 6 cut(s) 14, 29, 59, 269, 462, 563
AgsI TTSAA 1 cut(s) 524
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 7 cut(s) 70, 82, 129, 163, 349, 475, 511
AluI AGCT 7 cut(s) 70, 82, 129, 163, 349, 475, 511
Alw21I GWGCWC 2 cut(s) 131, 441
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 4 cut(s) 121, 179, 373, 475
ApoI RAATTY 1 cut(s) 492
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 3 cut(s) 26, 42, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 157, 189
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 131, 441
BbvI GCAGC 4 cut(s) 108, 166, 360, 462
BcnI CCSGG 2 cut(s) 62, 111
BcoDI GTCTC 1 cut(s) 81
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 6 cut(s) 117, 122, 177, 180, 374, 476
BlsI GCNGC 6 cut(s) 118, 123, 178, 181, 375, 477
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuEI CTTGAG 3 cut(s) 20, 292, 337
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 2 cut(s) 94, 197
BseGI GGATG 1 cut(s) 433
BseXI GCAGC 4 cut(s) 108, 166, 360, 462
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 26, 459
BshFI GGCC 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 131, 441
BsiSI CCGG 4 cut(s) 62, 95, 111, 198
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 131, 441
Bsp143I GATC 3 cut(s) 31, 454, 540
BspACI CCGC 3 cut(s) 116, 177, 201
BspANI GGCC 1 cut(s) 277
BspFNI CGCG 2 cut(s) 26, 459
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 196
BsrFI RCCGGY 2 cut(s) 94, 197
BssAI RCCGGY 2 cut(s) 94, 197
BssMI GATC 3 cut(s) 31, 454, 540
BstC8I GCNNGC 4 cut(s) 199, 203, 480, 513
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 2 cut(s) 26, 459
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 3 cut(s) 26, 42, 121
BstKTI GATC 3 cut(s) 34, 457, 543
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 31, 454, 540
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 2 cut(s) 26, 459
BstV1I GCAGC 4 cut(s) 108, 166, 360, 462
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 199, 203, 480, 513
CfoI GCGC 3 cut(s) 26, 42, 121
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
Csp6I GTAC 6 cut(s) 13, 28, 58, 268, 461, 562
CviAII CATG 2 cut(s) 47, 335
CviQI GTAC 6 cut(s) 13, 28, 58, 268, 461, 562
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 33, 456, 542
DpnII GATC 3 cut(s) 31, 454, 540
DraI TTTAAA 1 cut(s) 487
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 2 cut(s) 50, 338
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 46, 334
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 6 cut(s) 117, 122, 177, 180, 374, 476
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 6 cut(s) 117, 122, 177, 180, 374, 476
GlaI GCGC 3 cut(s) 25, 41, 120
GluI GCNGC 6 cut(s) 117, 122, 177, 180, 374, 476
HaeII RGCGCY 2 cut(s) 43, 122
HaeIII GGCC 1 cut(s) 277
HapII CCGG 4 cut(s) 62, 95, 111, 198
HhaI GCGC 3 cut(s) 26, 42, 121
Hin1II CATG 2 cut(s) 50, 338
Hin6I GCGC 3 cut(s) 24, 40, 119
HinP1I GCGC 3 cut(s) 24, 40, 119
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaII CCGG 4 cut(s) 62, 95, 111, 198
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 13, 367
Hpy188I TCNGA 3 cut(s) 86, 145, 306
Hpy8I GTNNAC 2 cut(s) 13, 367
HpyAV CCTTC 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 376, 505, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 2 cut(s) 50, 338
HspAI GCGC 3 cut(s) 24, 40, 119
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 31, 454, 540
LmnI GCTCC 2 cut(s) 67, 444
LpnPI CCDG 8 cut(s) 6, 75, 92, 108, 124, 173, 191, 211
Lsp1109I GCAGC 4 cut(s) 108, 166, 360, 462
MalI GATC 3 cut(s) 33, 456, 542
MboI GATC 3 cut(s) 31, 454, 540
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 3 cut(s) 184, 419, 524
MhlI GDGCHC 2 cut(s) 131, 441
MluCI AATT 5 cut(s) 184, 419, 492, 524, 577
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 94, 147, 267, 336
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 2 cut(s) 399, 486
MslI CAYNNNNRTG 2 cut(s) 318, 381
MspA1I CMGCKG 2 cut(s) 179, 475
MspI CCGG 4 cut(s) 62, 95, 111, 198
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 3 cut(s) 184, 419, 524
MvnI CGCG 2 cut(s) 26, 459
MwoI GCNNNNNNNGC 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 3 cut(s) 31, 454, 540
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 50, 338
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 2 cut(s) 79, 150
OliI CACNNNNGTG 1 cut(s) 318
PaqCI CACCTGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 199
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 6 cut(s) 118, 123, 178, 181, 375, 477
PshBI ATTAAT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 6 cut(s) 14, 29, 59, 269, 462, 563
RsaNI GTAC 6 cut(s) 13, 28, 58, 268, 461, 562
RseI CAYNNNNRTG 2 cut(s) 318, 381
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 399, 486
SatI GCNGC 6 cut(s) 117, 122, 177, 180, 374, 476
Sau3AI GATC 3 cut(s) 31, 454, 540
Sau96I GGNCC 2 cut(s) 157, 189
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 441
SetI ASST 9 cut(s) 12, 72, 84, 131, 165, 210, 351, 477, 513
SinI GGWCC 2 cut(s) 157, 189
SmiMI CAYNNNNRTG 2 cut(s) 318, 381
SmlI CTYRAG 3 cut(s) 35, 271, 316
SmoI CTYRAG 3 cut(s) 35, 271, 316
Sse9I AATT 5 cut(s) 184, 419, 492, 524, 577
SsiI CCGC 3 cut(s) 116, 177, 201
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaqI TCGA 1 cut(s) 131
TasI AATT 5 cut(s) 184, 419, 492, 524, 577
TatI WGTACW 2 cut(s) 267, 561
TauI GCSGC 2 cut(s) 119, 179
Tru1I TTAA 2 cut(s) 399, 486
Tru9I TTAA 2 cut(s) 399, 486
TscAI CASTG 1 cut(s) 244
TseI GCWGC 4 cut(s) 121, 179, 373, 475
TspDTI ATGAA 3 cut(s) 351, 399, 447
TspGWI ACGGA 2 cut(s) 30, 440
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 157, 189
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.