RchiOBHm_Chr1g0320051

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003959
Physical Location & Seq
Reverse (-)
7709220 .. 7709933
714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55023

Sequence Viewer

Length: 507 bp
ATGACGAAGGTGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCAACAGCTCGGAGACAAGCCGGTGGAGGCTAAACCCGGCGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCAGCTGCGAATTGGTCCAAAGCCGGCGGCGACGCCGGGCAGGTGAAGAAGGCTTTCGACGCGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACGGTGCCATTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTGGAGAACTATCTCTTTCCCAATTTCGTTCCTGAAACGGCGACGTTCGAGCACGTTATGTCCATGATTCTCATGGTCAATGAGAAGGTTTTGCCTTTTGGAATTGCACTATTTACTTTGGGTCACATTAGGGTTAGAAAACTAATCCAAGTAGTTTTTATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

168

Amino Acids

18.94

Weight (kDa)

7.85

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 55 - 142 3.8e-21 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 340
AccII CGCG 3 cut(s) 26, 116, 236
AciI CCGC 3 cut(s) 116, 201, 236
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 4 cut(s) 14, 29, 59, 338
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 6 cut(s) 70, 82, 129, 163, 179, 241
AluI AGCT 6 cut(s) 70, 82, 129, 163, 179, 241
Alw21I GWGCWC 2 cut(s) 131, 393
Alw26I GTCTC 2 cut(s) 81, 254
ApeKI GCWGC 3 cut(s) 121, 176, 179
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 4 cut(s) 26, 42, 116, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 3 cut(s) 62, 111, 211
AsuHPI GGTGA 2 cut(s) 229, 256
AvaII GGWCC 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 131, 393
BbvI GCAGC 3 cut(s) 108, 166, 188
BceAI ACGGC 1 cut(s) 393
BcnI CCSGG 3 cut(s) 62, 111, 211
BcoDI GTCTC 2 cut(s) 81, 254
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 5 cut(s) 117, 122, 177, 180, 202
BlsI GCNGC 5 cut(s) 118, 123, 178, 181, 203
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 62, 111, 211
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 2 cut(s) 158, 300
BmrFI CCNGG 3 cut(s) 62, 111, 211
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 3 cut(s) 62, 111, 211
BsaHI GRCGYC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 2 cut(s) 94, 197
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 3 cut(s) 108, 166, 188
Bsh1236I CGCG 3 cut(s) 26, 116, 236
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 131, 393
BsiSI CCGG 5 cut(s) 62, 95, 111, 198, 210
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 81, 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 131, 393
BspACI CCGC 3 cut(s) 116, 201, 236
BspFNI CGCG 3 cut(s) 26, 116, 236
BspLI GGNNCC 2 cut(s) 158, 300
BspMI ACCTGC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 94, 197
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 94, 197
BssNI GRCGYC 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 199
BstFNI CGCG 3 cut(s) 26, 116, 236
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 4 cut(s) 26, 42, 116, 121
BstMAI GTCTC 2 cut(s) 81, 254
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 60, 109, 209
BstUI CGCG 3 cut(s) 26, 116, 236
BstV1I GCAGC 3 cut(s) 108, 166, 188
BstV2I GAAGAC 1 cut(s) 299
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 4 cut(s) 26, 42, 116, 121
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 2 cut(s) 215, 242
Csp6I GTAC 4 cut(s) 13, 28, 58, 337
CviAII CATG 3 cut(s) 47, 403, 412
CviQI GTAC 4 cut(s) 13, 28, 58, 337
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 50, 406, 415
FaiI YATR 6 cut(s) 48, 170, 398, 404, 413, 500
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 46, 402, 411
Fnu4HI GCNGC 5 cut(s) 117, 122, 177, 180, 202
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 117, 122, 177, 180, 202
GlaI GCGC 4 cut(s) 25, 41, 115, 120
GluI GCNGC 5 cut(s) 117, 122, 177, 180, 202
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 5 cut(s) 62, 95, 111, 198, 210
HgaI GACGC 2 cut(s) 215, 242
HhaI GCGC 4 cut(s) 26, 42, 116, 121
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 50, 406, 415
Hin6I GCGC 4 cut(s) 24, 40, 114, 119
HinP1I GCGC 4 cut(s) 24, 40, 114, 119
HinfI GANTC 2 cut(s) 148, 406
HpaII CCGG 5 cut(s) 62, 95, 111, 198, 210
HphI GGTGA 2 cut(s) 229, 256
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 86, 145, 153
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 3 cut(s) 209, 236, 385
HpyAV CCTTC 3 cut(s) 217, 271, 418
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 383, 393
HpyCH4V TGCA 4 cut(s) 176, 307, 446, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 383, 393
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 50, 406, 415
HspAI GCGC 4 cut(s) 24, 40, 114, 119
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 67, 238
Lsp1109I GCAGC 3 cut(s) 108, 166, 188
MaeII ACGT 2 cut(s) 383, 393
MaeIII GTNAC 1 cut(s) 461
MboII GAAGA 4 cut(s) 232, 259, 262, 304
MhlI GDGCHC 2 cut(s) 131, 393
MluCI AATT 3 cut(s) 184, 361, 441
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 94, 147, 274, 282, 319
Mph1103I ATGCAT 1 cut(s) 504
MroNI GCCGGC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 5 cut(s) 62, 95, 111, 198, 210
MspR9I CCNGG 3 cut(s) 62, 111, 211
MteI GCGCNGCGC 1 cut(s) 117
MvnI CGCG 3 cut(s) 26, 116, 236
MwoI GCNNNNNNNGC 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 3 cut(s) 62, 111, 211
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 50, 406, 415
NlaIV GGNNCC 2 cut(s) 158, 300
NmeAIII GCCGAG 2 cut(s) 79, 150
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 504
PaqCI CACCTGC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 148, 406
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 118, 123, 178, 181, 203
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 158, 300
PspPI GGNCC 2 cut(s) 157, 189
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 4 cut(s) 14, 29, 59, 338
RsaNI GTAC 4 cut(s) 13, 28, 58, 337
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 505
SatI GCNGC 5 cut(s) 117, 122, 177, 180, 202
Sau96I GGNCC 2 cut(s) 157, 189
ScaI AGTACT 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 62, 111, 211
SduI GDGCHC 2 cut(s) 131, 393
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 3 cut(s) 184, 361, 441
SsiI CCGC 3 cut(s) 116, 201, 236
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 60, 109, 209
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 386, 396
TaqI TCGA 3 cut(s) 131, 231, 387
TasI AATT 3 cut(s) 184, 361, 441
TatI WGTACW 1 cut(s) 336
TauI GCSGC 2 cut(s) 119, 204
TfiI GAWTC 2 cut(s) 148, 406
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 3 cut(s) 121, 176, 179
Tsp45I GTSAC 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 30, 278
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 157, 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.