Rorug01G0030400

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003959
Physical Location & Seq
Reverse (-)
5137622 .. 5138029
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0030400.1

Sequence Viewer

Length: 408 bp
ATGCCCAGTCCTAATGAATATGGCAGTATGGTTGCTGGTGGAGGGCGGCCTTTGGTTGGTTTAATTTCGCCAGAACATGCAGAGGTTTTGGCATGCAAGATGGCAATTGACTTTGCCTTGGATCAGAATTTGGTACCAACTGTGATAGAGACAGATTCTGAAATGGTGAAGCGACAACTATGTAGCTCTGAAGGAATTAATACTTCCTTTCTGGGCCGTATCTATGAGGATCTGAACTCCATATTGGCATCAAATCCCAATTTGCAGATTTCTCACACTAGAAGAAATGCAAACAAGGTTGCACATCTAATGGCTGCGCATGCTAGCTCTCTAGTTCGTGAATGTTTTTATATTTCTCCTCACCCTTTCTTGGCATCTGCTATTGCAGGTGAACGTTATCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

135

Amino Acids

14.71

Weight (kDa)

6.03

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 108 3.8e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 377
Acc16I TGCGCA 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 377
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AciI CCGC 1 cut(s) 46
AclI AACGTT 1 cut(s) 394
AclWI GGATC 2 cut(s) 129, 237
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 56, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 186, 327
AluI AGCT 2 cut(s) 186, 327
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 129, 237
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 47, 214
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 127
AseI ATTAAT 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 178, 353, 401
AsuNHI GCTAGC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 3 cut(s) 279, 324, 332
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 2 cut(s) 47, 315
BlsI GCNGC 2 cut(s) 48, 316
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 2 cut(s) 257, 383
BmtI GCTAGC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 370
Bse1I ACTGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 56, 370
BseNI ACTGG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 49, 216
BshNI GGYRCC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 56, 370
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 2 cut(s) 49, 216
Bsp143I GATC 2 cut(s) 121, 229
BspACI CCGC 1 cut(s) 46
BspANI GGCC 2 cut(s) 49, 216
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 2 cut(s) 129, 237
BspT107I GGYRCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 121, 229
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 94, 321, 325
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 124, 232
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 121, 229
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 3 cut(s) 80, 96, 323
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 2 cut(s) 49, 216
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 94, 321, 325
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 134
CviAII CATG 3 cut(s) 77, 93, 320
CviJI RGCY 5 cut(s) 49, 186, 216, 314, 327
CviKI_1 RGCY 5 cut(s) 49, 186, 216, 314, 327
CviQI GTAC 1 cut(s) 134
DpnI GATC 2 cut(s) 123, 231
DpnII GATC 2 cut(s) 121, 229
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 3 cut(s) 80, 96, 323
FatI CATG 3 cut(s) 76, 92, 319
FauNDI CATATG 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 47, 315
Fsp4HI GCNGC 2 cut(s) 47, 315
FspBI CTAG 3 cut(s) 279, 324, 332
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 2 cut(s) 47, 315
HaeIII GGCC 2 cut(s) 49, 216
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 80, 96, 323
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 155
HphI GGTGA 3 cut(s) 178, 353, 401
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 4 cut(s) 126, 160, 190, 234
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 6 cut(s) 80, 96, 265, 290, 302, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 3 cut(s) 80, 96, 323
HspAI GCGC 1 cut(s) 317
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 121, 229
LpnPI CCDG 5 cut(s) 19, 21, 84, 197, 372
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 257, 383
MaeI CTAG 3 cut(s) 279, 324, 332
MaeII ACGT 1 cut(s) 394
MalI GATC 2 cut(s) 123, 231
MboI GATC 2 cut(s) 121, 229
MboII GAAGA 1 cut(s) 294
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 229
MluCI AATT 5 cut(s) 63, 105, 127, 195, 259
MnlI CCTC 4 cut(s) 35, 76, 220, 369
MseI TTAA 2 cut(s) 62, 198
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeI CATATG 1 cut(s) 402
NdeII GATC 2 cut(s) 121, 229
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 3 cut(s) 80, 96, 323
NlaIV GGNNCC 1 cut(s) 135
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 3 cut(s) 80, 96, 323
PaeI GCATGC 2 cut(s) 96, 323
PaqCI CACCTGC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 48, 316
PshBI ATTAAT 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 62, 198
SatI GCNGC 2 cut(s) 47, 315
Sau3AI GATC 2 cut(s) 121, 229
Sau96I GGNCC 1 cut(s) 214
SetI ASST 6 cut(s) 87, 188, 300, 329, 391, 397
SfaNI GCATC 2 cut(s) 257, 383
SphI GCATGC 2 cut(s) 96, 323
Sse9I AATT 5 cut(s) 63, 105, 127, 195, 259
SsiI CCGC 1 cut(s) 46
SspMI CTAG 3 cut(s) 279, 324, 332
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 397
TasI AATT 5 cut(s) 63, 105, 127, 195, 259
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 62, 198
Tru9I TTAA 2 cut(s) 62, 198
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 30
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 127
XceI RCATGY 3 cut(s) 80, 96, 323
XspI CTAG 3 cut(s) 279, 324, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.