Rh1DG023200

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003959
Physical Location & Seq
Forward (+)
3594661 .. 3596667
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG023200.1

Sequence Viewer

Length: 420 bp
ATGACCAAGGTCTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTGCAGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGAGAAGCCGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCGGCGGCGACGCCGCGCAGGTGAAGAAGGCGTTCGACGCGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGAAGGAGGGGCAGAGGAAGACGGTGCCGTTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTGGAGAACTATCTCTTTCCCAATTTCGATCCCGAAACGGCTACGTTCGAGCACGTTATGTCCATGATTCTCATGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

5.33

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 338
AccI GTMKAC 1 cut(s) 12
AccII CGCG 3 cut(s) 26, 212, 236
AciI CCGC 5 cut(s) 116, 177, 201, 210, 236
AclWI GGATC 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 29, 59, 336
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 5 cut(s) 70, 82, 129, 163, 241
AluI AGCT 5 cut(s) 70, 82, 129, 163, 241
Alw21I GWGCWC 2 cut(s) 131, 391
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 121, 179
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 4 cut(s) 26, 42, 121, 214
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 2 cut(s) 229, 256
AvaII GGWCC 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 131, 391
BbvI GCAGC 2 cut(s) 108, 166
BceAI ACGGC 2 cut(s) 284, 391
BcnI CCSGG 2 cut(s) 62, 111
BcoDI GTCTC 1 cut(s) 254
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 210
BlsI GCNGC 6 cut(s) 118, 123, 178, 181, 203, 211
BmcAI AGTACT 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 2 cut(s) 158, 298
BmrFI CCNGG 2 cut(s) 62, 111
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 297
BpuMI CCSGG 2 cut(s) 62, 111
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 2 cut(s) 94, 197
Bse1I ACTGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 108, 166
Bsh1236I CGCG 3 cut(s) 26, 212, 236
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 131, 391
BsiSI CCGG 4 cut(s) 62, 95, 111, 198
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 131, 391
Bsp143I GATC 1 cut(s) 365
BspACI CCGC 5 cut(s) 116, 177, 201, 210, 236
BspFNI CGCG 3 cut(s) 26, 212, 236
BspLI GGNNCC 2 cut(s) 158, 298
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 94, 197
BsrI ACTGG 1 cut(s) 332
BssAI RCCGGY 2 cut(s) 94, 197
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 365
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 199
BstFNI CGCG 3 cut(s) 26, 212, 236
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 4 cut(s) 26, 42, 121, 214
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 3 cut(s) 26, 212, 236
BstV1I GCAGC 2 cut(s) 108, 166
BstV2I GAAGAC 1 cut(s) 297
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 4 cut(s) 26, 42, 121, 214
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 2 cut(s) 215, 242
Csp6I GTAC 3 cut(s) 28, 58, 335
CviAII CATG 3 cut(s) 47, 401, 410
CviQI GTAC 3 cut(s) 28, 58, 335
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 50, 404, 413
FaiI YATR 5 cut(s) 48, 170, 396, 402, 411
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 46, 400, 409
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 210
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 210
GlaI GCGC 4 cut(s) 25, 41, 120, 213
GluI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 210
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 4 cut(s) 62, 95, 111, 198
HgaI GACGC 2 cut(s) 215, 242
HhaI GCGC 4 cut(s) 26, 42, 121, 214
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 50, 404, 413
Hin6I GCGC 4 cut(s) 24, 40, 119, 212
HinP1I GCGC 4 cut(s) 24, 40, 119, 212
HinfI GANTC 2 cut(s) 148, 404
HpaII CCGG 4 cut(s) 62, 95, 111, 198
HphI GGTGA 2 cut(s) 229, 256
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 86, 145, 153
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 209, 236
HpyAV CCTTC 2 cut(s) 217, 269
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 2 cut(s) 381, 391
HpyCH4V TGCA 2 cut(s) 53, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 381, 391
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 50, 404, 413
HspAI GCGC 4 cut(s) 24, 40, 119, 212
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 2 cut(s) 67, 238
Lsp1109I GCAGC 2 cut(s) 108, 166
MaeII ACGT 2 cut(s) 381, 391
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 4 cut(s) 232, 259, 262, 302
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 131, 391
MluCI AATT 2 cut(s) 184, 359
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 94, 147, 272, 280, 317
MroNI GCCGGC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 4 cut(s) 62, 95, 111, 198
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 1 cut(s) 184
MvnI CGCG 3 cut(s) 26, 212, 236
MwoI GCNNNNNNNGC 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 1 cut(s) 365
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 50, 404, 413
NlaIV GGNNCC 2 cut(s) 158, 298
NmeAIII GCCGAG 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 148, 404
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 6 cut(s) 118, 123, 178, 181, 203, 211
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 158, 298
PspPI GGNCC 2 cut(s) 157, 189
RsaI GTAC 3 cut(s) 29, 59, 336
RsaNI GTAC 3 cut(s) 28, 58, 335
SacI GAGCTC 1 cut(s) 131
SatI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 210
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 2 cut(s) 157, 189
ScaI AGTACT 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 391
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 2 cut(s) 184, 359
SsiI CCGC 5 cut(s) 116, 177, 201, 210, 236
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 2 cut(s) 384, 394
TaqI TCGA 4 cut(s) 131, 231, 364, 385
TasI AATT 2 cut(s) 184, 359
TatI WGTACW 1 cut(s) 334
TauI GCSGC 4 cut(s) 119, 179, 204, 212
TfiI GAWTC 2 cut(s) 148, 404
TseI GCWGC 2 cut(s) 121, 179
TspGWI ACGGA 2 cut(s) 30, 278
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 157, 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.