RchiOBHm_Chr1g0320421

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003959
Physical Location & Seq
Reverse (-)
8053390 .. 8056960
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55057

Sequence Viewer

Length: 537 bp
ATGACGAAGGTGTACGGAACAGGCGCGTACGATCTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGACAAGCCGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTGAGAGGGACCAGCTCACTATGACTGCCGCTGCCAATTGGTCCAAAGCCGGCGGGCAGGTGAAGAATGGTTTGTACTTGAGGCCACTTGTTGCTGATGTTGCTGTTGTTCCGAAATGCCACTTGAGTGCTTTGTATATACATGAAAAGAGGAAGCTCTTTACCCAACTTGTTGACTTGCTGCACTTTTATGAAGGATTTGAGATTAATGATAATGTTGGGAAACAATTGACGGATGATGAAGTGCTCCAATCTCATTATGATCGCGTACAATCTTTTCAGCTGCTTGCTTTTAAAAAAATTCCTAAGTTGCAACAGCTTGCATTGGTTCAATTGACAACCGAAATGATCTCTGTGAAAGATTGGCTGTACTTTCCCCTGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

178

Amino Acids

20.16

Weight (kDa)

7.06

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 75 - 161 2.4e-27 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 2 cut(s) 26, 414
AciI CCGC 3 cut(s) 116, 177, 201
AcsI RAATTY 1 cut(s) 447
AfaI GTAC 6 cut(s) 14, 29, 59, 224, 417, 518
AgsI TTSAA 1 cut(s) 479
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 7 cut(s) 70, 82, 129, 163, 304, 430, 466
AluI AGCT 7 cut(s) 70, 82, 129, 163, 304, 430, 466
Alw21I GWGCWC 2 cut(s) 131, 396
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 4 cut(s) 121, 179, 328, 430
ApoI RAATTY 1 cut(s) 447
AseI ATTAAT 1 cut(s) 354
AspLEI GCGC 3 cut(s) 26, 42, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 157, 189
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 131, 396
BbvI GCAGC 4 cut(s) 108, 166, 315, 417
BcnI CCSGG 2 cut(s) 62, 111
BcoDI GTCTC 1 cut(s) 81
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 6 cut(s) 117, 122, 177, 180, 329, 431
BlsI GCNGC 6 cut(s) 118, 123, 178, 181, 330, 432
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuEI CTTGAG 3 cut(s) 20, 247, 292
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 2 cut(s) 94, 197
BseGI GGATG 1 cut(s) 388
BseXI GCAGC 4 cut(s) 108, 166, 315, 417
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 26, 414
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 131, 396
BsiSI CCGG 4 cut(s) 62, 95, 111, 198
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 131, 396
Bsp143I GATC 3 cut(s) 31, 409, 495
BspACI CCGC 3 cut(s) 116, 177, 201
BspANI GGCC 1 cut(s) 232
BspFNI CGCG 2 cut(s) 26, 414
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 196
BsrFI RCCGGY 2 cut(s) 94, 197
BssAI RCCGGY 2 cut(s) 94, 197
BssMI GATC 3 cut(s) 31, 409, 495
BstC8I GCNNGC 4 cut(s) 199, 203, 435, 468
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 2 cut(s) 26, 414
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 3 cut(s) 26, 42, 121
BstKTI GATC 3 cut(s) 34, 412, 498
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 31, 409, 495
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 2 cut(s) 26, 414
BstV1I GCAGC 4 cut(s) 108, 166, 315, 417
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 388
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 199, 203, 435, 468
CfoI GCGC 3 cut(s) 26, 42, 121
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
Csp6I GTAC 6 cut(s) 13, 28, 58, 223, 416, 517
CviAII CATG 2 cut(s) 47, 290
CviQI GTAC 6 cut(s) 13, 28, 58, 223, 416, 517
DdeI CTNAG 1 cut(s) 453
DpnI GATC 3 cut(s) 33, 411, 497
DpnII GATC 3 cut(s) 31, 409, 495
DraI TTTAAA 1 cut(s) 442
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 2 cut(s) 50, 293
FaiI YATR 7 cut(s) 48, 170, 285, 287, 291, 339, 408
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 46, 289
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 6 cut(s) 117, 122, 177, 180, 329, 431
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 6 cut(s) 117, 122, 177, 180, 329, 431
GlaI GCGC 3 cut(s) 25, 41, 120
GluI GCNGC 6 cut(s) 117, 122, 177, 180, 329, 431
HaeII RGCGCY 2 cut(s) 43, 122
HaeIII GGCC 1 cut(s) 232
HapII CCGG 4 cut(s) 62, 95, 111, 198
HhaI GCGC 3 cut(s) 26, 42, 121
Hin1II CATG 2 cut(s) 50, 293
Hin6I GCGC 3 cut(s) 24, 40, 119
HinP1I GCGC 3 cut(s) 24, 40, 119
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HpaII CCGG 4 cut(s) 62, 95, 111, 198
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 13, 322
Hpy188I TCNGA 3 cut(s) 86, 145, 261
Hpy8I GTNNAC 2 cut(s) 13, 322
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 331, 460, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 2 cut(s) 50, 293
HspAI GCGC 3 cut(s) 24, 40, 119
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 31, 409, 495
LmnI GCTCC 2 cut(s) 67, 399
LpnPI CCDG 8 cut(s) 6, 75, 92, 108, 124, 173, 191, 211
Lsp1109I GCAGC 4 cut(s) 108, 166, 315, 417
MalI GATC 3 cut(s) 33, 411, 497
MboI GATC 3 cut(s) 31, 409, 495
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 3 cut(s) 184, 374, 479
MhlI GDGCHC 2 cut(s) 131, 396
MluCI AATT 5 cut(s) 184, 374, 447, 479, 532
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 94, 147, 222, 291
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 2 cut(s) 354, 441
MslI CAYNNNNRTG 2 cut(s) 273, 336
MspA1I CMGCKG 2 cut(s) 179, 430
MspI CCGG 4 cut(s) 62, 95, 111, 198
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 3 cut(s) 184, 374, 479
MvnI CGCG 2 cut(s) 26, 414
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 3 cut(s) 31, 409, 495
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 50, 293
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 2 cut(s) 79, 150
OliI CACNNNNGTG 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 199
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 6 cut(s) 118, 123, 178, 181, 330, 432
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 6 cut(s) 14, 29, 59, 224, 417, 518
RsaNI GTAC 6 cut(s) 13, 28, 58, 223, 416, 517
RseI CAYNNNNRTG 2 cut(s) 273, 336
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 354, 441
SatI GCNGC 6 cut(s) 117, 122, 177, 180, 329, 431
Sau3AI GATC 3 cut(s) 31, 409, 495
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 396
SetI ASST 9 cut(s) 12, 72, 84, 131, 165, 210, 306, 432, 468
SinI GGWCC 2 cut(s) 157, 189
SmiMI CAYNNNNRTG 2 cut(s) 273, 336
SmlI CTYRAG 3 cut(s) 35, 226, 271
SmoI CTYRAG 3 cut(s) 35, 226, 271
Sse9I AATT 5 cut(s) 184, 374, 447, 479, 532
SsiI CCGC 3 cut(s) 116, 177, 201
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaqI TCGA 1 cut(s) 131
TasI AATT 5 cut(s) 184, 374, 447, 479, 532
TatI WGTACW 2 cut(s) 222, 516
TauI GCSGC 2 cut(s) 119, 179
Tru1I TTAA 2 cut(s) 354, 441
Tru9I TTAA 2 cut(s) 354, 441
TseI GCWGC 4 cut(s) 121, 179, 328, 430
TspDTI ATGAA 3 cut(s) 306, 354, 402
TspGWI ACGGA 2 cut(s) 30, 395
VpaK11BI GGWCC 2 cut(s) 157, 189
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.