RchiOBHm_Chr1g0320091

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003959
Physical Location & Seq
Reverse (-)
7738087 .. 7741205
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55026

Sequence Viewer

Length: 285 bp
ATGACGAAGGCGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTACCGAGTACCCGGTGGAGCTGAACCACCAGCTTGGAGAGAAGCCGGTGGAGGCTAAACCCGGCGCGGCGCTGCCGAGCTCGATAACGCGGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCAGCGGGGAAGAAGGCGTTCGACGCGGAGCTGGTGAAGAAGATTTACTGTGGAATATGGTACTGGTACTTGAGGCCACTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

94

Amino Acids

10.33

Weight (kDa)

5.55

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 26, 116, 139, 222
AciI CCGC 5 cut(s) 116, 139, 177, 201, 222
AfaI GTAC 5 cut(s) 14, 29, 59, 258, 264
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 5 cut(s) 70, 82, 129, 163, 227
AluI AGCT 5 cut(s) 70, 82, 129, 163, 227
Alw21I GWGCWC 1 cut(s) 131
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 121, 179
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 4 cut(s) 26, 42, 116, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 157, 189
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 108, 166
BcnI CCSGG 2 cut(s) 62, 111
BfoI RGCGCY 2 cut(s) 43, 122
BisI GCNGC 4 cut(s) 117, 122, 177, 180
BlsI GCNGC 4 cut(s) 118, 123, 178, 181
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 108, 166
Bsh1236I CGCG 4 cut(s) 26, 116, 139, 222
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 62, 95, 111
BsiWI CGTACG 2 cut(s) 12, 27
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 131
BspACI CCGC 5 cut(s) 116, 139, 177, 201, 222
BspANI GGCC 1 cut(s) 272
BspFNI CGCG 4 cut(s) 26, 116, 139, 222
BspLI GGNNCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 199
BstFNI CGCG 4 cut(s) 26, 116, 139, 222
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 4 cut(s) 26, 42, 116, 121
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 4 cut(s) 26, 116, 139, 222
BstV1I GCAGC 2 cut(s) 108, 166
BstXI CCANNNNNNTGG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 4 cut(s) 26, 42, 116, 121
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 1 cut(s) 228
Csp6I GTAC 5 cut(s) 13, 28, 58, 257, 263
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 272
CviKI_1 RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 272
CviQI GTAC 5 cut(s) 13, 28, 58, 257, 263
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 48, 170, 254
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 4 cut(s) 117, 122, 177, 180
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 4 cut(s) 117, 122, 177, 180
GlaI GCGC 4 cut(s) 25, 41, 115, 120
GluI GCNGC 4 cut(s) 117, 122, 177, 180
HaeII RGCGCY 2 cut(s) 43, 122
HaeIII GGCC 1 cut(s) 272
HapII CCGG 3 cut(s) 62, 95, 111
HgaI GACGC 1 cut(s) 228
HhaI GCGC 4 cut(s) 26, 42, 116, 121
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 4 cut(s) 24, 40, 114, 119
HinP1I GCGC 4 cut(s) 24, 40, 114, 119
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 62, 95, 111
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 145, 153
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 4 cut(s) 24, 40, 114, 119
LmnI GCTCC 2 cut(s) 67, 224
LpnPI CCDG 9 cut(s) 6, 75, 92, 108, 124, 173, 211, 213, 245
Lsp1109I GCAGC 2 cut(s) 108, 166
MaeIII GTNAC 1 cut(s) 49
MboII GAAGA 3 cut(s) 218, 245, 248
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 94, 147, 262
MroXI GAANNNNTTC 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 179, 201
MspI CCGG 3 cut(s) 62, 95, 111
MspR9I CCNGG 2 cut(s) 62, 111
MteI GCGCNGCGC 1 cut(s) 117
MunI CAATTG 1 cut(s) 184
MvnI CGCG 4 cut(s) 26, 116, 139, 222
MwoI GCNNNNNNNGC 1 cut(s) 219
NciI CCSGG 2 cut(s) 62, 111
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 2 cut(s) 12, 27
PkrI GCNGC 4 cut(s) 118, 123, 178, 181
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 2 cut(s) 12, 27
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
RsaI GTAC 5 cut(s) 14, 29, 59, 258, 264
RsaNI GTAC 5 cut(s) 13, 28, 58, 257, 263
SacI GAGCTC 1 cut(s) 131
SatI GCNGC 4 cut(s) 117, 122, 177, 180
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 72, 84, 131, 165, 229
SinI GGWCC 2 cut(s) 157, 189
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 184
SsiI CCGC 5 cut(s) 116, 139, 177, 201, 222
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 131, 217
TasI AATT 1 cut(s) 184
TauI GCSGC 2 cut(s) 119, 179
TfiI GAWTC 1 cut(s) 148
TseI GCWGC 2 cut(s) 121, 179
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 157, 189
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.