Rmu_sc0004555.1_g000003

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004555.1
OG0003959
Physical Location & Seq
Forward (+)
15797 .. 16683
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004555.1_g000003.1.cds

Sequence Viewer

Length: 390 bp
atgacgaaggcgtacggaacaggcgcgtacgatttcaagcgccaccatgttgcagagtacccggtggagctgaaccaccagctcggagagaagccggtggaggctaaacccggcgcgtcgctgccgagctcgataacgctgtcggagattcagagggaccagctcactatgattgccgctgccaattggtccaaagccagcggggaagaaggcgttcgacgcggagctggtgaagaagatttactgtggaatatggtactgttttatgaaggatttgagattaatgataatgttgggaaacaattgacggatgatgaagtgctccaatctcattatgatcgcgtacaatcttttcagctgcttgcttttaaaaatattcctaagttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

5.15

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 26, 116, 222, 342
AciI CCGC 3 cut(s) 177, 201, 222
AfaI GTAC 5 cut(s) 14, 29, 59, 258, 345
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 6 cut(s) 70, 82, 129, 163, 227, 358
AluI AGCT 6 cut(s) 70, 82, 129, 163, 227, 358
Alw21I GWGCWC 2 cut(s) 131, 324
ApeKI GCWGC 3 cut(s) 121, 179, 358
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 3 cut(s) 26, 42, 116
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 157, 189
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
Bbv12I GWGCWC 2 cut(s) 131, 324
BbvI GCAGC 3 cut(s) 108, 166, 345
BcnI CCSGG 2 cut(s) 62, 111
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 4 cut(s) 122, 177, 180, 359
BlsI GCNGC 4 cut(s) 123, 178, 181, 360
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 1 cut(s) 94
BseGI GGATG 1 cut(s) 316
BseXI GCAGC 3 cut(s) 108, 166, 345
Bsh1236I CGCG 4 cut(s) 26, 116, 222, 342
BsiHKAI GWGCWC 2 cut(s) 131, 324
BsiSI CCGG 3 cut(s) 62, 95, 111
BsiWI CGTACG 2 cut(s) 12, 27
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 131, 324
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 3 cut(s) 177, 201, 222
BspFNI CGCG 4 cut(s) 26, 116, 222, 342
BspLI GGNNCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 246, 261
BstC8I GCNNGC 2 cut(s) 199, 363
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 4 cut(s) 26, 116, 222, 342
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 3 cut(s) 26, 42, 116
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 4 cut(s) 26, 116, 222, 342
BstV1I GCAGC 3 cut(s) 108, 166, 345
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 199, 363
CfoI GCGC 3 cut(s) 26, 42, 116
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 2 cut(s) 105, 228
Csp6I GTAC 5 cut(s) 13, 28, 58, 257, 344
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 358
CviKI_1 RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 358
CviQI GTAC 5 cut(s) 13, 28, 58, 257, 344
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DraI TTTAAA 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 50
FaiI YATR 5 cut(s) 48, 170, 254, 267, 336
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 4 cut(s) 122, 177, 180, 359
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 4 cut(s) 122, 177, 180, 359
GlaI GCGC 3 cut(s) 25, 41, 115
GluI GCNGC 4 cut(s) 122, 177, 180, 359
HaeII RGCGCY 1 cut(s) 43
HapII CCGG 3 cut(s) 62, 95, 111
HgaI GACGC 2 cut(s) 105, 228
HhaI GCGC 3 cut(s) 26, 42, 116
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 3 cut(s) 24, 40, 114
HinP1I GCGC 3 cut(s) 24, 40, 114
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 62, 95, 111
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 86, 145, 153
Hpy99I CGWCG 2 cut(s) 121, 222
HpyAV CCTTC 2 cut(s) 203, 263
HpyCH4III ACNGT 2 cut(s) 246, 261
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 3 cut(s) 24, 40, 114
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 3 cut(s) 67, 224, 327
LpnPI CCDG 8 cut(s) 6, 75, 92, 108, 124, 173, 211, 213
Lsp1109I GCAGC 3 cut(s) 108, 166, 345
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 218, 245, 248
MfeI CAATTG 2 cut(s) 184, 302
MhlI GDGCHC 2 cut(s) 131, 324
MluCI AATT 2 cut(s) 184, 302
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 2 cut(s) 94, 147
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 282, 369
MspA1I CMGCKG 3 cut(s) 179, 201, 358
MspI CCGG 3 cut(s) 62, 95, 111
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 2 cut(s) 184, 302
MvnI CGCG 4 cut(s) 26, 116, 222, 342
MwoI GCNNNNNNNGC 1 cut(s) 219
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 2 cut(s) 12, 27
PkrI GCNGC 4 cut(s) 123, 178, 181, 360
PshBI ATTAAT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 2 cut(s) 12, 27
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 5 cut(s) 14, 29, 59, 258, 345
RsaNI GTAC 5 cut(s) 13, 28, 58, 257, 344
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 282, 369
SatI GCNGC 4 cut(s) 122, 177, 180, 359
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 324
SetI ASST 6 cut(s) 72, 84, 131, 165, 229, 360
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 2 cut(s) 184, 302
SsiI CCGC 3 cut(s) 177, 201, 222
SspI AATATT 1 cut(s) 376
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaaI ACNGT 2 cut(s) 246, 261
TaqI TCGA 2 cut(s) 131, 217
TasI AATT 2 cut(s) 184, 302
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 282, 369
Tru9I TTAA 2 cut(s) 282, 369
TseI GCWGC 3 cut(s) 121, 179, 358
TspDTI ATGAA 2 cut(s) 282, 330
TspGWI ACGGA 2 cut(s) 30, 323
VpaK11BI GGWCC 2 cut(s) 157, 189
VspI ATTAAT 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.