Rmu_sc0004627.1_g000010

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004627.1
OG0003959
Physical Location & Seq
Reverse (-)
51482 .. 51949
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004627.1_g000010.1.cds

Sequence Viewer

Length: 468 bp
atgacgaaggtgtacggaacaagcacgcacgatttcaagcgccaccatgttaccgagtacccggtggagctgaaccaccagctaggagagaagccggtggaggctaaacccggtgcggcgctgccgagctcgataacgctgtcggagattgagagggaccagctcactatgattgccgctgccaattggtccaaagccagcggggaagaaggcgttcgacgcggagctggtgaagaagattttctgtggaatatggtactggtattcacatacttcacatatctaagttgggtaaaggggaagctctttacccaactttttgacttgctgcagttttatgaagaatttgagattaatgataattttgggaaacaattgacggatgatgaagtgctccaatctcattatgatcgcgtacaatcttttcagttgcttgcttttacaaagattcctaaggtgtgtatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

5.19

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 222, 414
AciI CCGC 4 cut(s) 116, 177, 201, 222
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 4 cut(s) 14, 59, 258, 417
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 6 cut(s) 70, 82, 129, 163, 227, 304
AluI AGCT 6 cut(s) 70, 82, 129, 163, 227, 304
Alw21I GWGCWC 2 cut(s) 131, 396
ApeKI GCWGC 3 cut(s) 121, 179, 328
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 2 cut(s) 213, 240
AspLEI GCGC 2 cut(s) 42, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 157, 189
AxyI CCTNAGG 1 cut(s) 453
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 131, 396
BbvI GCAGC 3 cut(s) 108, 166, 315
BcnI CCSGG 2 cut(s) 62, 111
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 329
BfoI RGCGCY 2 cut(s) 43, 122
BisI GCNGC 5 cut(s) 117, 122, 177, 180, 329
BlsI GCNGC 5 cut(s) 118, 123, 178, 181, 330
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 264
Bse21I CCTNAGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 3 cut(s) 108, 166, 315
Bsh1236I CGCG 2 cut(s) 222, 414
BsiHKAI GWGCWC 2 cut(s) 131, 396
BsiSI CCGG 3 cut(s) 62, 95, 111
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 131, 396
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 4 cut(s) 116, 177, 201, 222
BspFNI CGCG 2 cut(s) 222, 414
BspLI GGNNCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 409
BstC8I GCNNGC 3 cut(s) 26, 199, 435
BstDEI CTNAG 2 cut(s) 284, 453
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 2 cut(s) 222, 414
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 2 cut(s) 42, 121
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 60, 109
BstSFI CTRYAG 1 cut(s) 329
BstUI CGCG 2 cut(s) 222, 414
BstV1I GCAGC 3 cut(s) 108, 166, 315
Bsu36I CCTNAGG 1 cut(s) 453
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 26, 199, 435
CfoI GCGC 2 cut(s) 42, 121
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 1 cut(s) 228
Csp6I GTAC 4 cut(s) 13, 58, 257, 416
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 304
CviKI_1 RGCY 9 cut(s) 70, 82, 94, 104, 129, 163, 197, 227, 304
CviQI GTAC 4 cut(s) 13, 58, 257, 416
DdeI CTNAG 2 cut(s) 284, 453
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 50
FaiI YATR 9 cut(s) 48, 170, 254, 271, 280, 339, 408, 464, 466
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 5 cut(s) 117, 122, 177, 180, 329
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 117, 122, 177, 180, 329
FspBI CTAG 1 cut(s) 83
GlaI GCGC 2 cut(s) 41, 120
GluI GCNGC 5 cut(s) 117, 122, 177, 180, 329
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 3 cut(s) 62, 95, 111
HgaI GACGC 1 cut(s) 228
HhaI GCGC 2 cut(s) 42, 121
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 2 cut(s) 40, 119
HinP1I GCGC 2 cut(s) 40, 119
HinfI GANTC 1 cut(s) 448
HpaII CCGG 3 cut(s) 62, 95, 111
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 2 cut(s) 284, 453
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 2 cut(s) 40, 119
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 3 cut(s) 67, 224, 399
LpnPI CCDG 8 cut(s) 75, 92, 108, 124, 173, 211, 213, 245
Lsp1109I GCAGC 3 cut(s) 108, 166, 315
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 4 cut(s) 218, 245, 248, 353
MfeI CAATTG 2 cut(s) 184, 374
MhlI GDGCHC 2 cut(s) 131, 396
MluCI AATT 4 cut(s) 184, 344, 361, 374
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 2 cut(s) 94, 147
MroXI GAANNNNTTC 2 cut(s) 213, 240
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 179, 201
MspI CCGG 3 cut(s) 62, 95, 111
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 2 cut(s) 184, 374
MvnI CGCG 2 cut(s) 222, 414
MwoI GCNNNNNNNGC 1 cut(s) 219
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 1 cut(s) 409
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 213, 240
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 5 cut(s) 118, 123, 178, 181, 330
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
PstI CTGCAG 1 cut(s) 333
RsaI GTAC 4 cut(s) 14, 59, 258, 417
RsaNI GTAC 4 cut(s) 13, 58, 257, 416
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 5 cut(s) 117, 122, 177, 180, 329
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 396
SetI ASST 8 cut(s) 12, 72, 84, 131, 165, 229, 306, 459
SfcI CTRYAG 1 cut(s) 329
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 4 cut(s) 184, 344, 361, 374
SsiI CCGC 4 cut(s) 116, 177, 201, 222
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaqI TCGA 2 cut(s) 131, 217
TasI AATT 4 cut(s) 184, 344, 361, 374
TauI GCSGC 2 cut(s) 119, 179
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 3 cut(s) 121, 179, 328
TspDTI ATGAA 2 cut(s) 354, 402
TspGWI ACGGA 2 cut(s) 30, 395
VpaK11BI GGWCC 2 cut(s) 157, 189
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 344
XmnI GAANNNNTTC 2 cut(s) 213, 240
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.