Rh1CG044000

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003959
Physical Location & Seq
Reverse (-)
8319751 .. 8322818
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG044000.1

Sequence Viewer

Length: 432 bp
ATGACGAAGGTGTACGGAACAGGCGCGTACAATTTCAAGCGCCACCATGTTGCCGGGTACTCAGTGGAGCTAAACCACCAACTCGGAGACAAGCCGGTGGAGGCTAAACAAGCTAGGGGCGACGCCGCGCAGGTGAAGAAGGCATTCGACGGGGAGCTGGTGAAGAAGATTTATGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACGATGCCATTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTAGAGAACTATTTCTTTCCCAATTTCGAAATAGCGACGTTTGAGCATGTTATGTCCATGATTCTTATGCTCAATGAGAAGGAAAAAAAAGGGAAAATGACCAACTGTGCACAGCTAAAAGATTTTGTTCAGATTAGAAAGTCATTGCCAAGGCTTTTGGTAAATGGCCAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

143

Amino Acids

16.43

Weight (kDa)

9.3

Isoelectric Point (pI)

19.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 43 - 115 2.3e-16 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 2 cut(s) 26, 128
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 4 cut(s) 14, 29, 59, 254
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 4 cut(s) 70, 113, 157, 370
AluI AGCT 4 cut(s) 70, 113, 157, 370
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 81, 170
Alw44I GTGCAC 1 cut(s) 363
AoxI GGCC 1 cut(s) 421
ApaLI GTGCAC 1 cut(s) 363
Asp700I GAANNNNTTC 2 cut(s) 143, 266
AspLEI GCGC 3 cut(s) 26, 42, 130
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 145, 172
AsuII TTCGAA 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 367
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 81, 170
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 404, 424
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 2 cut(s) 218, 398
BseDI CCNNGG 2 cut(s) 404, 424
BseMI GCAATG 2 cut(s) 218, 398
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 367
Bsh1236I CGCG 2 cut(s) 26, 128
BshFI GGCC 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 54, 95
BsmAI GTCTC 2 cut(s) 81, 170
BsmBI CGTCTC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 423
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 367
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 2 cut(s) 26, 128
BspMI ACCTGC 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 282
BsrDI GCAATG 2 cut(s) 218, 398
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 404, 424
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 404, 424
Bst4CI ACNGT 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 61, 256
BstFNI CGCG 2 cut(s) 26, 128
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 3 cut(s) 26, 42, 130
BstMAI GTCTC 2 cut(s) 81, 170
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 2 cut(s) 26, 128
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 3 cut(s) 26, 42, 130
Cfr10I RCCGGY 1 cut(s) 94
CseI GACGC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 13, 28, 58, 253
CviAII CATG 3 cut(s) 47, 302, 313
CviQI GTAC 4 cut(s) 13, 28, 58, 253
DdeI CTNAG 2 cut(s) 61, 256
EaeI YGGCCR 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 404, 424
EcoT14I CCWWGG 2 cut(s) 404, 424
ErhI CCWWGG 2 cut(s) 404, 424
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 50, 305, 316
FaiI YATR 6 cut(s) 48, 174, 303, 308, 314, 323
FatI CATG 3 cut(s) 46, 301, 312
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 25, 41, 129
GluI GCNGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 1 cut(s) 423
HapII CCGG 2 cut(s) 54, 95
HgaI GACGC 1 cut(s) 131
HhaI GCGC 3 cut(s) 26, 42, 130
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 50, 305, 316
Hin6I GCGC 3 cut(s) 24, 40, 128
HinP1I GCGC 3 cut(s) 24, 40, 128
HinfI GANTC 1 cut(s) 316
HpaII CCGG 2 cut(s) 54, 95
HphI GGTGA 2 cut(s) 145, 172
Hpy166II GTNNAC 2 cut(s) 13, 365
Hpy188I TCNGA 2 cut(s) 86, 387
Hpy8I GTNNAC 2 cut(s) 13, 365
Hpy99I CGWCG 3 cut(s) 125, 152, 295
HpyAV CCTTC 3 cut(s) 133, 187, 328
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 223, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 61, 256
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 50, 305, 316
HspAI GCGC 3 cut(s) 24, 40, 128
LmnI GCTCC 2 cut(s) 67, 154
LpnPI CCDG 6 cut(s) 6, 67, 108, 116, 143, 263
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 293
MboII GAAGA 4 cut(s) 148, 175, 178, 220
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 2 cut(s) 31, 277
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 4 cut(s) 94, 190, 198, 235
Mox20I TGGCCA 1 cut(s) 423
MroXI GAANNNNTTC 2 cut(s) 143, 266
MscI TGGCCA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 2 cut(s) 54, 95
MspR9I CCNGG 1 cut(s) 55
Mva1269I GAATGC 1 cut(s) 143
MvnI CGCG 2 cut(s) 26, 128
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 55
NlaIII CATG 3 cut(s) 50, 305, 316
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 121
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 2 cut(s) 143, 266
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 127
RsaI GTAC 4 cut(s) 14, 29, 59, 254
RsaNI GTAC 4 cut(s) 13, 28, 58, 253
SatI GCNGC 1 cut(s) 126
ScaI AGTACT 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 367
SetI ASST 8 cut(s) 12, 72, 115, 135, 159, 246, 296, 372
SfaNI GCATC 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 282
Sse9I AATT 2 cut(s) 31, 277
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 2 cut(s) 404, 424
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 147, 282
TasI AATT 2 cut(s) 31, 277
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 69
TspGWI ACGGA 2 cut(s) 30, 194
TspRI CASTG 1 cut(s) 69
VneI GTGCAC 1 cut(s) 363
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 143, 266
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.