Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003959

Physical Location & Seq

Genomic Coordinates Forward (+)

3578945 .. 3581914

Gene Structure 2970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACGAAGGCGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTACCGAGTACCCGGTGGAGCTGAACCACCAGCTTGGAGAGAAGCCGGTGGAGGCTAAACCCGGCGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCAGCGGGCAGATTATAGGGGCAACAACTACTAGTACACGTTTTGGAAAGCTGTTAGGAATGGAAAGCTCAAGAATCTTTGTCTTCCCTTCTCGTTCTGGTTTGATTTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

9.45

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003959)

Species	Orthologous Gene IDs
malus_domestica	MD02G1293500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0320051 RchiOBHm_Chr1g0320091 RchiOBHm_Chr1g0320381 RchiOBHm_Chr1g0320421 RchiOBHm_Chr1g0320881 RchiOBHm_Chr1g0320981
rosa_laevigata	RLG00000030457
rosa_multiflora	Rmu_sc0001049.1_g000002 Rmu_sc0002341.1_g000001 Rmu_sc0002745.1_g000009 Rmu_sc0004555.1_g000002 Rmu_sc0004555.1_g000003 Rmu_sc0004627.1_g000010 Rmu_sc0019966.1_g000002 Rmu_sc0036675.1_g000001
rosa_rugosa	Rorug01G0030400 Rorug01G0055600
rosa_samantha	Rh1AG042600 Rh1CG043300 Rh1CG043700 Rh1CG044000 Rh1CG044200 Rh1CG044700 Rh1CG044800 Rh1DG023000 Rh1DG023200 Rh1DG023700 Rh1DG024000 Rh1DG025000 Rh1DG025600 Rh1DG026600 Rh1DG049200
rosa_wichuraiana	Rw1G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 116
AciI	CCGC	3 cut(s)	116, 177, 201
AfaI	GTAC	4 cut(s)	14, 29, 59, 232
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	37, 306
AhlI	ACTAGT	1 cut(s)	227
AluBI	AGCT	6 cut(s)	70, 82, 129, 163, 247, 264
AluI	AGCT	6 cut(s)	70, 82, 129, 163, 247, 264
Alw21I	GWGCWC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	121, 179
AspLEI	GCGC	4 cut(s)	26, 42, 116, 121
AspS9I	GGNCC	2 cut(s)	157, 189
AsuC2I	CCSGG	2 cut(s)	62, 111
AvaII	GGWCC	2 cut(s)	157, 189
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	108, 166
BcnI	CCSGG	2 cut(s)	62, 111
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	43, 122
BisI	GCNGC	4 cut(s)	117, 122, 177, 180
BlsI	GCNGC	4 cut(s)	118, 123, 178, 181
Bme1390I	CCNGG	2 cut(s)	62, 111
Bme18I	GGWCC	2 cut(s)	157, 189
BmgT120I	GGNCC	2 cut(s)	157, 189
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	62, 111
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	2 cut(s)	62, 111
Bse118I	RCCGGY	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	108, 166
Bsh1236I	CGCG	2 cut(s)	26, 116
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	62, 95, 111
BsiWI	CGTACG	2 cut(s)	12, 27
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	3 cut(s)	116, 177, 201
BspFNI	CGCG	2 cut(s)	26, 116
BspLI	GGNNCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	199, 203
BstFNI	CGCG	2 cut(s)	26, 116
BstH2I	RGCGCY	2 cut(s)	43, 122
BstHHI	GCGC	4 cut(s)	26, 42, 116, 121
BstSCI	CCNGG	2 cut(s)	60, 109
BstUI	CGCG	2 cut(s)	26, 116
BstV1I	GCAGC	2 cut(s)	108, 166
BstV2I	GAAGAC	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	199, 203
CfoI	GCGC	4 cut(s)	26, 42, 116, 121
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	157, 189
Csp6I	GTAC	4 cut(s)	13, 28, 58, 231
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	9 cut(s)	70, 82, 94, 104, 129, 163, 197, 247, 264
CviKI_1	RGCY	9 cut(s)	70, 82, 94, 104, 129, 163, 197, 247, 264
CviQI	GTAC	4 cut(s)	13, 28, 58, 231
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	157, 189
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	1 cut(s)	50
FaiI	YATR	3 cut(s)	48, 170, 212
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	117, 122, 177, 180
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	117, 122, 177, 180
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	4 cut(s)	25, 41, 115, 120
GluI	GCNGC	4 cut(s)	117, 122, 177, 180
HaeII	RGCGCY	2 cut(s)	43, 122
HapII	CCGG	3 cut(s)	62, 95, 111
HhaI	GCGC	4 cut(s)	26, 42, 116, 121
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	4 cut(s)	24, 40, 114, 119
HinP1I	GCGC	4 cut(s)	24, 40, 114, 119
HinfI	GANTC	2 cut(s)	148, 270
HpaII	CCGG	3 cut(s)	62, 95, 111
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	145, 153
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	4 cut(s)	24, 40, 114, 119
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	6, 75, 92, 108, 124, 173, 211, 279
Lsp1109I	GCAGC	2 cut(s)	108, 166
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	2 cut(s)	94, 147
MspA1I	CMGCKG	2 cut(s)	179, 201
MspI	CCGG	3 cut(s)	62, 95, 111
MspR9I	CCNGG	2 cut(s)	62, 111
MteI	GCGCNGCGC	1 cut(s)	117
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	26, 116
NciI	CCSGG	2 cut(s)	62, 111
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	148, 270
Pfl23II	CGTACG	2 cut(s)	12, 27
PkrI	GCNGC	4 cut(s)	118, 123, 178, 181
Psp124BI	GAGCTC	1 cut(s)	131
PspLI	CGTACG	2 cut(s)	12, 27
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	157, 189
RsaI	GTAC	4 cut(s)	14, 29, 59, 232
RsaNI	GTAC	4 cut(s)	13, 28, 58, 231
SacI	GAGCTC	1 cut(s)	131
SatI	GCNGC	4 cut(s)	117, 122, 177, 180
Sau96I	GGNCC	2 cut(s)	157, 189
ScrFI	CCNGG	2 cut(s)	62, 111
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	7 cut(s)	72, 84, 131, 165, 238, 249, 266
SinI	GGWCC	2 cut(s)	157, 189
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	3 cut(s)	116, 177, 201
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	60, 109
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	2 cut(s)	119, 179
TfiI	GAWTC	2 cut(s)	148, 270
TseI	GCWGC	2 cut(s)	121, 179
TspGWI	ACGGA	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	157, 189
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.