Rorug01G0055600

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003959
Physical Location & Seq
Forward (+)
9129879 .. 9131483
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0055600.1

Sequence Viewer

Length: 1605 bp
ATGGGTAGCCTCCCATTCCACCATGATTCACATGAAACCACCTCTGCCCCCATCACCAAATCCCTAGACCCTGAAGAATTGAGGAAATACGGCCACATGGTCGTAGACTTCATCGCAGATTATTATCAAAACATAGAGAAATACCCAGTTCTAAGCCGAGTGCAACCTGGTTATTTGAGAAAATGCCTACCAGATTCTGCCCCATATGACCCTGAACCCATATCAACCATCCTTAAAGATGTTCAGGATCACATTGTTCCTGGCCTAACACATTGGCAAAGTCCAAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGGTTTCTCGGTGAAATGCTCACCACTGGACTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCAGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGCAGACATGCTTCAGCTTCCCAAGTCTTTCCATTTCTCTGGCAACGGAGGCGGTGTGTTACATGGGAGTACTTGTGAGGCCATTGTTTGCACAATGGCAGCTGCCAGAGACCAAATGCTACGCCGAATTGGTAGCGAGAATTTGGGAAATCTTGTTGTGTATGGTTCAGACCAAACACATAGCACACTTCAGAAAGCTTCCCAAATTCTTGGAATCAACATGGAGAACTTCCGGGCCATCAAGACTACAAAGTCAACTGAATTTGCACTATCACCTGAGATGCTAAGATTGACAATAAGTTCAGACCTAGAAGAAGGGTTAGTGCCACTCTTTGTATGTGCCACAATAGGCACAACCGCAACCACTGCTATTGATCCATTGGAGGCACTATGTCATGTAGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGGTGCATATGCTGGAAGCGCATGCATTTGTCCAGAGTTTCGACATTTCATTGATGGCGTAGAGGGCGCAAACTCTTTTACTTTTAACCCCCATAAGTGGTTATTCACTGGAATGGATTGCTGCTGCCTTTGGGTTAAGAATCCGAGTGCATTGGTACTTTCATTGTCAACGAATCCAGAGTTTTTGAGGAACACAGCCAGTAACTCAAAGCAAGTTGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGGAGGTTCCGAGCATTGAGGGTATGGCTTGTGCTAAGAAGCTACGGCGTGGCCAACCTTCGAAACTTTATACGTAGCCATGTCAAAATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTGTGGTGCCTAGAGACTTCTCCTTGGTCTGCTTTAGAATTTCACCATCGGCGTTGATCAGTAGGGATGAGGATGGTGAGATCGGTATGATAAACGAGGTCAACTGCAAGCTGCTAGATTCCATCAACGCATCAGGTAAAGCATACATGACCCATGCTGTGGTTGGAGGTATCTTTCTGCTGCGGTGCGCCATTGGTGCTACTCTGACAGAAGAAAAGCACATAGTCCAGGCTTGGAAGGTGGTGCAAGACCATGCACAAGCCATCCTCAATATGCATTGGAGAAAAATTCAGTCACCGTCCCCAAACTATGCTGCGAAGGTCAATTTGATACCCGAACTCTCAAAAGTATCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

534

Amino Acids

59.33

Weight (kDa)

6.41

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 56 - 429 8.7e-114 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 1252
AccB7I CCANNNNNTGG 1 cut(s) 1405
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 480, 786, 1429
AclWI GGATC 2 cut(s) 255, 797
AcoI YGGCCR 3 cut(s) 91, 1161, 1200
AcsI RAATTY 6 cut(s) 286, 568, 633, 689, 1284, 1533
AcuI CTGAAG 3 cut(s) 93, 425, 602
AfaI GTAC 2 cut(s) 499, 1017
AfiI CCNNNNNNNGG 2 cut(s) 957, 1405
AgsI TTSAA 3 cut(s) 309, 373, 1214
AjnI CCWGG 3 cut(s) 166, 259, 1473
AluBI AGCT 6 cut(s) 403, 445, 530, 626, 1152, 1357
AluI AGCT 6 cut(s) 403, 445, 530, 626, 1152, 1357
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 531, 1254
AlwI GGATC 2 cut(s) 255, 797
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 6 cut(s) 91, 262, 507, 663, 1161, 1200
ApeKI GCWGC 8 cut(s) 392, 527, 530, 981, 984, 1357, 1426, 1559
ApoI RAATTY 6 cut(s) 286, 568, 633, 689, 1284, 1533
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1223, 1255
AspLEI GCGC 3 cut(s) 881, 929, 1436
AspS9I GGNCC 1 cut(s) 663
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 8 cut(s) 46, 337, 347, 378, 693, 1281, 1334, 1533
AsuII TTCGAA 1 cut(s) 1171
AsuNHI GCTAGC 1 cut(s) 314
BalI TGGCCA 2 cut(s) 1163, 1202
BanI GGYRCC 1 cut(s) 1252
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 8 cut(s) 404, 517, 539, 968, 971, 1344, 1413, 1546
BccI CCATC 9 cut(s) 59, 236, 674, 854, 908, 1300, 1313, 1376, 1517
BceAI ACGGC 3 cut(s) 106, 856, 1171
BciT130I CCWGG 3 cut(s) 168, 261, 1475
BclI TGATCA 1 cut(s) 1302
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 2 cut(s) 531, 1254
BfaI CTAG 5 cut(s) 65, 315, 737, 1257, 1361
BisI GCNGC 8 cut(s) 393, 528, 531, 982, 985, 1358, 1427, 1560
BlsI GCNGC 8 cut(s) 394, 529, 532, 983, 986, 1359, 1428, 1561
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 4 cut(s) 168, 261, 662, 1475
BmgT120I GGNCC 1 cut(s) 663
BmiI GGNNCC 2 cut(s) 1118, 1254
BmrFI CCNGG 4 cut(s) 168, 261, 662, 1475
BmrI ACTGGG 2 cut(s) 140, 385
BmsI GCATC 2 cut(s) 699, 1385
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 2 cut(s) 140, 385
Bpu14I TTCGAA 1 cut(s) 1171
BpuMI CCSGG 1 cut(s) 662
BsaAI YACGTR 1 cut(s) 1184
BsaBI GATNNNNATC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 1269
BsaXI ACNNNNNCTCC 4 cut(s) 468, 487, 498, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1405
Bse1I ACTGG 6 cut(s) 146, 355, 380, 973, 1059, 1097
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 3 cut(s) 168, 261, 1475
BseDI CCNNGG 1 cut(s) 1269
BseGI GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 957, 1405
BseMII CTCAG 2 cut(s) 696, 1097
BseNI ACTGG 6 cut(s) 146, 355, 380, 973, 1059, 1097
BseXI GCAGC 8 cut(s) 404, 517, 539, 968, 971, 1344, 1413, 1546
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 6 cut(s) 93, 264, 509, 665, 1163, 1202
BshNI GGYRCC 1 cut(s) 1252
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 661, 1111
BslFI GGGAC 1 cut(s) 1531
BslI CCNNNNNNNGG 2 cut(s) 957, 1405
BsmAI GTCTC 2 cut(s) 531, 1254
BsmFI GGGAC 1 cut(s) 1531
BsnI GGCC 6 cut(s) 93, 264, 509, 665, 1163, 1202
Bso31I GGTCTC 1 cut(s) 531
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 247, 802, 1302, 1326
BspACI CCGC 3 cut(s) 480, 786, 1429
BspANI GGCC 6 cut(s) 93, 264, 509, 665, 1163, 1202
BspCNI CTCAG 2 cut(s) 697, 1098
BspLI GGNNCC 2 cut(s) 1118, 1254
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 2 cut(s) 255, 797
BspT104I TTCGAA 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 1252
BspTNI GGTCTC 1 cut(s) 531
BsrI ACTGG 6 cut(s) 146, 355, 380, 973, 1059, 1097
BssECI CCNNGG 1 cut(s) 1269
BssMI GATC 4 cut(s) 247, 802, 1302, 1326
BssT1I CCWWGG 1 cut(s) 1269
Bst2UI CCWGG 3 cut(s) 168, 261, 1475
Bst4CI ACNGT 1 cut(s) 1545
Bst6I CTCTTC 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 1184
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 316, 883, 1355
BstDEI CTNAG 5 cut(s) 152, 705, 713, 1106, 1145
BstF5I GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BstHHI GCGC 3 cut(s) 881, 929, 1436
BstKTI GATC 4 cut(s) 250, 805, 1305, 1329
BstMAI GTCTC 2 cut(s) 531, 1254
BstMBI GATC 4 cut(s) 247, 802, 1302, 1326
BstMWI GCNNNNNNNGC 6 cut(s) 320, 477, 794, 878, 924, 1442
BstNI CCWGG 3 cut(s) 168, 261, 1475
BstNSI RCATGY 2 cut(s) 439, 885
BstSCI CCNGG 4 cut(s) 166, 259, 660, 1473
BstSNI TACGTA 1 cut(s) 1184
BstV1I GCAGC 8 cut(s) 404, 517, 539, 968, 971, 1344, 1413, 1546
BstXI CCANNNNNNTGG 2 cut(s) 467, 638
BsuRI GGCC 6 cut(s) 93, 264, 509, 665, 1163, 1202
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BtsI GCAGTG 2 cut(s) 318, 792
BtsIMutI CAGTG 5 cut(s) 318, 348, 792, 966, 1103
Cac8I GCNNGC 3 cut(s) 316, 883, 1355
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 3 cut(s) 881, 929, 1436
Cfr13I GGNCC 1 cut(s) 663
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 498, 1016
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviQI GTAC 2 cut(s) 498, 1016
DdeI CTNAG 5 cut(s) 152, 705, 713, 1106, 1145
DpnI GATC 4 cut(s) 249, 804, 1304, 1328
DpnII GATC 4 cut(s) 247, 802, 1302, 1326
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 3 cut(s) 91, 1161, 1200
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 403
Eco105I TACGTA 1 cut(s) 1184
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 3 cut(s) 93, 425, 602
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 3 cut(s) 166, 259, 1473
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 2 cut(s) 887, 1524
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 1269
FaqI GGGAC 1 cut(s) 1531
FauNDI CATATG 2 cut(s) 205, 868
FbaI TGATCA 1 cut(s) 1302
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 8 cut(s) 393, 528, 531, 982, 985, 1358, 1427, 1560
FokI GGATG 5 cut(s) 215, 872, 1325, 1331, 1496
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 8 cut(s) 393, 528, 531, 982, 985, 1358, 1427, 1560
FspBI CTAG 5 cut(s) 65, 315, 737, 1257, 1361
GlaI GCGC 3 cut(s) 880, 928, 1435
GluI GCNGC 8 cut(s) 393, 528, 531, 982, 985, 1358, 1427, 1560
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 6 cut(s) 93, 264, 509, 665, 1163, 1202
HapII CCGG 2 cut(s) 661, 1111
HhaI GCGC 3 cut(s) 881, 929, 1436
Hin6I GCGC 3 cut(s) 879, 927, 1434
HinP1I GCGC 3 cut(s) 879, 927, 1434
HincII GTYRAC 3 cut(s) 684, 1029, 1348
HindII GTYRAC 3 cut(s) 684, 1029, 1348
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 6 cut(s) 26, 194, 642, 1000, 1033, 1364
HpaII CCGG 2 cut(s) 661, 1111
HphI GGTGA 8 cut(s) 46, 337, 347, 378, 693, 1281, 1334, 1533
Hpy166II GTNNAC 5 cut(s) 106, 684, 1029, 1081, 1348
Hpy188I TCNGA 6 cut(s) 598, 621, 733, 1005, 1121, 1452
Hpy188III TCNNGA 4 cut(s) 245, 670, 893, 1037
Hpy8I GTNNAC 5 cut(s) 106, 684, 1029, 1081, 1348
HpyAV CCTTC 5 cut(s) 737, 1178, 1208, 1477, 1558
HpyCH4III ACNGT 1 cut(s) 1545
HpyCH4IV ACGT 1 cut(s) 1183
HpyF10VI GCNNNNNNNGC 6 cut(s) 320, 477, 794, 878, 924, 1442
HpyF3I CTNAG 5 cut(s) 152, 705, 713, 1106, 1145
HpySE526I ACGT 1 cut(s) 1183
HspAI GCGC 3 cut(s) 879, 927, 1434
Ksp22I TGATCA 1 cut(s) 1302
Kzo9I GATC 4 cut(s) 247, 802, 1302, 1326
Lsp1109I GCAGC 8 cut(s) 404, 517, 539, 968, 971, 1344, 1413, 1546
LweI GCATC 2 cut(s) 699, 1385
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 5 cut(s) 65, 315, 737, 1257, 1361
MaeII ACGT 1 cut(s) 1183
MaeIII GTNAC 3 cut(s) 486, 1061, 1539
MalI GATC 4 cut(s) 249, 804, 1304, 1328
MboI GATC 4 cut(s) 247, 802, 1302, 1326
MboII GAAGA 4 cut(s) 86, 297, 752, 1469
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 2 cut(s) 1163, 1202
MluCI AATT 9 cut(s) 77, 286, 555, 568, 633, 689, 1284, 1533, 1570
MluNI TGGCCA 2 cut(s) 1163, 1202
MmeI TCCRAC 1 cut(s) 1390
Mox20I TGGCCA 2 cut(s) 1163, 1202
Mph1103I ATGCAT 2 cut(s) 887, 1524
MscI TGGCCA 2 cut(s) 1163, 1202
MseI TTAA 4 cut(s) 234, 357, 945, 996
MslI CAYNNNNRTG 3 cut(s) 416, 858, 971
Msp20I TGGCCA 2 cut(s) 1163, 1202
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 2 cut(s) 661, 1111
MspR9I CCNGG 4 cut(s) 168, 261, 662, 1475
MvaI CCWGG 3 cut(s) 168, 261, 1475
MwoI GCNNNNNNNGC 6 cut(s) 320, 477, 794, 878, 924, 1442
NciI CCSGG 1 cut(s) 662
NdeI CATATG 2 cut(s) 205, 868
NdeII GATC 4 cut(s) 247, 802, 1302, 1326
NheI GCTAGC 1 cut(s) 314
NlaIV GGNNCC 2 cut(s) 1118, 1254
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 1539
NsiI ATGCAT 2 cut(s) 887, 1524
NspI RCATGY 2 cut(s) 439, 885
NspV TTCGAA 1 cut(s) 1171
PaeI GCATGC 1 cut(s) 885
PfeI GAWTC 6 cut(s) 26, 194, 642, 1000, 1033, 1364
PflMI CCANNNNNTGG 1 cut(s) 1405
PkrI GCNGC 8 cut(s) 394, 529, 532, 983, 986, 1359, 1428, 1561
Ppu21I YACGTR 1 cut(s) 1184
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 166, 259, 1473
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 3 cut(s) 166, 259, 1473
PspN4I GGNNCC 2 cut(s) 1118, 1254
PspPI GGNCC 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 499, 1017
RsaNI GTAC 2 cut(s) 498, 1016
RseI CAYNNNNRTG 3 cut(s) 416, 858, 971
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 234, 357, 945, 996
SatI GCNGC 8 cut(s) 393, 528, 531, 982, 985, 1358, 1427, 1560
Sau3AI GATC 4 cut(s) 247, 802, 1302, 1326
Sau96I GGNCC 1 cut(s) 663
ScaI AGTACT 1 cut(s) 499
ScrFI CCNGG 4 cut(s) 168, 261, 662, 1475
SduI GDGCHC 1 cut(s) 405
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 699, 1385
SfuI TTCGAA 1 cut(s) 1171
SmiMI CAYNNNNRTG 3 cut(s) 416, 858, 971
SnaBI TACGTA 1 cut(s) 1184
SphI GCATGC 1 cut(s) 885
Sse9I AATT 9 cut(s) 77, 286, 555, 568, 633, 689, 1284, 1533, 1570
SsiI CCGC 3 cut(s) 480, 786, 1429
SspMI CTAG 5 cut(s) 65, 315, 737, 1257, 1361
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 4 cut(s) 166, 259, 660, 1473
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 1 cut(s) 1545
TaiI ACGT 1 cut(s) 1186
TaqI TCGA 3 cut(s) 405, 901, 1171
TasI AATT 9 cut(s) 77, 286, 555, 568, 633, 689, 1284, 1533, 1570
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 6 cut(s) 26, 194, 642, 1000, 1033, 1364
Tru1I TTAA 4 cut(s) 234, 357, 945, 996
Tru9I TTAA 4 cut(s) 234, 357, 945, 996
TscAI CASTG 5 cut(s) 325, 355, 799, 973, 1110
TseFI GTSAC 1 cut(s) 1539
TseI GCWGC 8 cut(s) 392, 527, 530, 981, 984, 1357, 1426, 1559
Tsp45I GTSAC 1 cut(s) 1539
TspDTI ATGAA 6 cut(s) 48, 100, 372, 842, 898, 1011
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 5 cut(s) 325, 355, 799, 973, 1110
Van91I CCANNNNNTGG 1 cut(s) 1405
XapI RAATTY 6 cut(s) 286, 568, 633, 689, 1284, 1533
XceI RCATGY 2 cut(s) 439, 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 1406
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 5 cut(s) 65, 315, 737, 1257, 1361
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 2 cut(s) 887, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.