Rh1DG024000

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003959
Physical Location & Seq
Forward (+)
3753261 .. 3753892
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG024000.1

Sequence Viewer

Length: 330 bp
ATGATTGCCACTGCGAATTGGTCCAAAGCTAGGGGCGACGCCGCGCAGGTGAAGAAGGCATTCGACGGGGAGCTGGTGAAGAAGATTTATGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACGATGCCATTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTAGAGAACTATTTCTTTCCCAATTTCGAAATAGCGACTTCCGAGAGAATGTGGCAGCTTGGGTATGATTTCATGACCAGAAAGATGCGTTTAAGGGATTCCTTGGAAGGGTTCTTCACCTTAAATCGGGTTTTAACATTTGGAACAATGAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

109

Amino Acids

12.88

Weight (kDa)

9.1

Isoelectric Point (pI)

27.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 2 - 77 5.7e-12 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 30, 279, 297
AluBI AGCT 3 cut(s) 29, 73, 229
AluI AGCT 3 cut(s) 29, 73, 229
Alw26I GTCTC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 226
Asp700I GAANNNNTTC 2 cut(s) 59, 182
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 61, 88, 280
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 42, 227
BlsI GCNGC 2 cut(s) 43, 228
BmcAI AGTACT 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmsI GCATC 2 cut(s) 120, 246
BpiI GAAGAC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 279, 297
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 30, 279, 297
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 30, 279, 297
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 198
BspACI CCGC 1 cut(s) 42
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 86
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
BveI ACCTGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 29, 73, 165, 229
CviKI_1 RGCY 4 cut(s) 29, 73, 165, 229
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 90, 237, 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 42, 227
Fsp4HI GCNGC 2 cut(s) 42, 227
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 42, 227
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 269
HphI GGTGA 3 cut(s) 61, 88, 280
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 41, 68
HpyAV CCTTC 3 cut(s) 49, 103, 272
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 32, 59, 179, 262
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 120, 246
MaeI CTAG 1 cut(s) 30
MboII GAAGA 5 cut(s) 64, 91, 94, 136, 277
MluCI AATT 2 cut(s) 16, 193
MnlI CCTC 3 cut(s) 106, 114, 151
MroXI GAANNNNTTC 2 cut(s) 59, 182
MseI TTAA 4 cut(s) 263, 293, 305, 328
Mva1269I GAATGC 1 cut(s) 59
MvnI CGCG 1 cut(s) 44
NlaIII CATG 1 cut(s) 247
NspV TTCGAA 1 cut(s) 198
PagI TCATGA 1 cut(s) 243
PaqCI CACCTGC 1 cut(s) 37
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 2 cut(s) 59, 182
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 43, 228
PspPI GGNCC 1 cut(s) 21
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 4 cut(s) 263, 293, 305, 328
SatI GCNGC 2 cut(s) 42, 227
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 170
SetI ASST 6 cut(s) 31, 51, 75, 162, 231, 293
SfaNI GCATC 2 cut(s) 120, 246
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 1 cut(s) 21
Sse9I AATT 2 cut(s) 16, 193
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 63, 198
TasI AATT 2 cut(s) 16, 193
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 4 cut(s) 263, 293, 305, 328
Tru9I TTAA 4 cut(s) 263, 293, 305, 328
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 21
XmnI GAANNNNTTC 2 cut(s) 59, 182
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.