Rh1DG023700

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003959
Physical Location & Seq
Forward (+)
3721917 .. 3722744
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG023700.1

Sequence Viewer

Length: 288 bp
ATGACGAAGGCGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTACCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGAGAAGCCGGTGGAGGCTAAACCCGGCTCGGCGCTGCCGAGCTCGATAACGCGGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCAGCGGGCAGTTGCAACAGCTTGCATTGGTTCAATTGACAACCAAAATGATCTCTCTAAAAGATTGTCTGTACTTTCTCCTGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

9.13

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 139
AciI CCGC 3 cut(s) 139, 177, 201
AfaI GTAC 4 cut(s) 14, 29, 59, 269
AgsI TTSAA 2 cut(s) 37, 230
AluBI AGCT 5 cut(s) 70, 82, 129, 163, 217
AluI AGCT 5 cut(s) 70, 82, 129, 163, 217
Alw21I GWGCWC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 121, 179
AspLEI GCGC 3 cut(s) 26, 42, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AvaII GGWCC 2 cut(s) 157, 189
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 108, 166
BcnI CCSGG 2 cut(s) 62, 111
BfoI RGCGCY 2 cut(s) 43, 122
BisI GCNGC 3 cut(s) 122, 177, 180
BlsI GCNGC 3 cut(s) 123, 178, 181
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 62, 111
BpuMI CCSGG 2 cut(s) 62, 111
Bse118I RCCGGY 1 cut(s) 94
BseXI GCAGC 2 cut(s) 108, 166
Bsh1236I CGCG 2 cut(s) 26, 139
Bsh1285I CGRYCG 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 62, 95, 111
BsiWI CGTACG 2 cut(s) 12, 27
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 3 cut(s) 139, 177, 201
BspFNI CGCG 2 cut(s) 26, 139
BspLI GGNNCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 246
BstC8I GCNNGC 3 cut(s) 199, 203, 219
BstFNI CGCG 2 cut(s) 26, 139
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 3 cut(s) 26, 42, 121
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMCI CGRYCG 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 2 cut(s) 26, 139
BstV1I GCAGC 2 cut(s) 108, 166
Cac8I GCNNGC 3 cut(s) 199, 203, 219
CfoI GCGC 3 cut(s) 26, 42, 121
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 157, 189
Csp6I GTAC 4 cut(s) 13, 28, 58, 268
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 70, 82, 94, 104, 114, 129, 163, 197, 217
CviKI_1 RGCY 9 cut(s) 70, 82, 94, 104, 114, 129, 163, 197, 217
CviQI GTAC 4 cut(s) 13, 28, 58, 268
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 50
FaiI YATR 2 cut(s) 48, 170
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 122, 177, 180
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 122, 177, 180
GlaI GCGC 3 cut(s) 25, 41, 120
GluI GCNGC 3 cut(s) 122, 177, 180
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 3 cut(s) 62, 95, 111
HhaI GCGC 3 cut(s) 26, 42, 121
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 3 cut(s) 24, 40, 119
HinP1I GCGC 3 cut(s) 24, 40, 119
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 62, 95, 111
Hpy188I TCNGA 3 cut(s) 86, 145, 153
Hpy188III TCNNGA 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 211, 221
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 3 cut(s) 24, 40, 119
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 6, 75, 92, 108, 124, 173, 211
Lsp1109I GCAGC 2 cut(s) 108, 166
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MfeI CAATTG 2 cut(s) 184, 230
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 184, 230, 283
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 2 cut(s) 94, 147
MspA1I CMGCKG 2 cut(s) 179, 201
MspI CCGG 3 cut(s) 62, 95, 111
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 2 cut(s) 184, 230
MvnI CGCG 2 cut(s) 26, 139
NciI CCSGG 2 cut(s) 62, 111
NdeII GATC 1 cut(s) 246
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 2 cut(s) 95, 150
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 1 cut(s) 148
Pfl23II CGTACG 2 cut(s) 12, 27
PkrI GCNGC 3 cut(s) 123, 178, 181
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 2 cut(s) 12, 27
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 189
RsaI GTAC 4 cut(s) 14, 29, 59, 269
RsaNI GTAC 4 cut(s) 13, 28, 58, 268
SacI GAGCTC 1 cut(s) 131
SatI GCNGC 3 cut(s) 122, 177, 180
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 157, 189
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 72, 84, 131, 165, 219
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 3 cut(s) 184, 230, 283
SsiI CCGC 3 cut(s) 139, 177, 201
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
TaqI TCGA 1 cut(s) 131
TasI AATT 3 cut(s) 184, 230, 283
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 148
TseI GCWGC 2 cut(s) 121, 179
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 157, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.