Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001049.1

Orthogroup ID

OG0003959

Physical Location & Seq

Genomic Coordinates Forward (+)

3164 .. 4411

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001049.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgaccaaggtgtacggaacaggcgcgtacgatttcaagcgccaccatgttgcagagtacccggtggagctgaaccaccagctcggagagaagccggtggaggctaaacccggtgcggcgctgccgagctcgataacgctgtcggagattcagagggaccagctcactatgattgccgctgcgaattggtccaaagctggcggcgacgccgcgcaggtgaagaaggcgttcaacacggagctggtgaagaagatttacgagacggagttgtgtgtgaaagaggggcagaggaagacggtgccattgcagagagtgatgattttggaggtcagccagtatttggagaaccatatctttcccaatttcgatcccaaaacggcgacgttcgaacacgttatgtccatgattctcatggtcaatgagaaggtaatgccttttggaattgcagtatttactttgggtcacattagggaggcgttgtaccttgcttgtgccggccccattttggtgattgatcaccaagagctgggtggaaaaggtgtccaagatgtcatccatgtcaaaagccaagtgtttgagctcatccagccacagcttcaccgccttgcttgtgagagttgcttcttctcggcatcctgcagcacagctccaattgcagacagagttgcactccatttcttggaaatgaccgaagctgagcaagttgtgggggggtcaactcatcaagcgcaactgaagaaaatcccaaagaaaaacacctccaccaccatttctgctgtcgacgacttcggattcaataaggcttccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

270

Amino Acids

29.84

Weight (kDa)

6.83

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003959)

Species	Orthologous Gene IDs
malus_domestica	MD02G1293500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0320051 RchiOBHm_Chr1g0320091 RchiOBHm_Chr1g0320381 RchiOBHm_Chr1g0320421 RchiOBHm_Chr1g0320881 RchiOBHm_Chr1g0320981
rosa_laevigata	RLG00000030457
rosa_multiflora	Rmu_sc0001049.1_g000002 Rmu_sc0002341.1_g000001 Rmu_sc0002745.1_g000009 Rmu_sc0004555.1_g000002 Rmu_sc0004555.1_g000003 Rmu_sc0004627.1_g000010 Rmu_sc0019966.1_g000002 Rmu_sc0036675.1_g000001
rosa_rugosa	Rorug01G0030400 Rorug01G0055600
rosa_samantha	Rh1AG042600 Rh1CG043300 Rh1CG043700 Rh1CG044000 Rh1CG044200 Rh1CG044700 Rh1CG044800 Rh1DG023000 Rh1DG023200 Rh1DG023700 Rh1DG024000 Rh1DG025000 Rh1DG025600 Rh1DG026600 Rh1DG049200
rosa_wichuraiana	Rw1G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	3 cut(s)	340, 526, 679
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	2 cut(s)	26, 212
AciI	CCGC	5 cut(s)	116, 177, 201, 210, 601
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	4 cut(s)	14, 29, 59, 482
AfiI	CCNNNNNNNGG	4 cut(s)	340, 505, 526, 679
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	37, 232, 796
Alw21I	GWGCWC	2 cut(s)	131, 582
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	121, 179, 639
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	5 cut(s)	26, 42, 121, 214, 730
AspS9I	GGNCC	3 cut(s)	157, 189, 497
AsuC2I	CCSGG	2 cut(s)	62, 111
AsuHPI	GGTGA	5 cut(s)	229, 256, 509, 520, 590
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	157, 189
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	131, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	131, 582
BbvI	GCAGC	3 cut(s)	108, 166, 651
BceAI	ACGGC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	62, 111
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	2 cut(s)	43, 122
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	7 cut(s)	117, 122, 177, 180, 202, 210, 640
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	7 cut(s)	118, 123, 178, 181, 203, 211, 641
Bme1390I	CCNGG	2 cut(s)	62, 111
Bme18I	GGWCC	2 cut(s)	157, 189
BmgT120I	GGNCC	3 cut(s)	157, 189, 497
BmiI	GGNNCC	3 cut(s)	158, 300, 499
BmrFI	CCNGG	2 cut(s)	62, 111
BmsI	GCATC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	654, 686
Bpu1102I	GCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	62, 111
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 505, 526, 679
Bse118I	RCCGGY	2 cut(s)	94, 494
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	552, 582, 632
BseLI	CCNNNNNNNGG	4 cut(s)	340, 505, 526, 679
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	108, 166, 651
BseYI	CCCAGC	1 cut(s)	526
Bsh1236I	CGCG	2 cut(s)	26, 212
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	131, 582
BsiSI	CCGG	4 cut(s)	62, 95, 111, 495
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	340, 505, 526, 679
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	131, 582
Bsp143I	GATC	2 cut(s)	367, 514
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	5 cut(s)	116, 177, 201, 210, 601
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	688
BspFNI	CGCG	2 cut(s)	26, 212
BspLI	GGNNCC	3 cut(s)	158, 300, 499
BspMAI	CTGCAG	1 cut(s)	641
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	2 cut(s)	94, 494
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	2 cut(s)	94, 494
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	367, 514
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	199, 496
BstDEI	CTNAG	1 cut(s)	696
BstF5I	GGATG	3 cut(s)	552, 582, 632
BstFNI	CGCG	2 cut(s)	26, 212
BstH2I	RGCGCY	2 cut(s)	43, 122
BstHHI	GCGC	5 cut(s)	26, 42, 121, 214, 730
BstKTI	GATC	2 cut(s)	370, 517
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	367, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	586, 653
BstSCI	CCNGG	2 cut(s)	60, 109
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	2 cut(s)	26, 212
BstV1I	GCAGC	3 cut(s)	108, 166, 651
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	552, 582, 632
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	199, 496
CfoI	GCGC	5 cut(s)	26, 42, 121, 214, 730
Cfr10I	RCCGGY	2 cut(s)	94, 494
Cfr13I	GGNCC	3 cut(s)	157, 189, 497
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	13, 28, 58, 481
CviAII	CATG	4 cut(s)	47, 403, 412, 557
CviQI	GTAC	4 cut(s)	13, 28, 58, 481
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	2 cut(s)	369, 516
DpnII	GATC	2 cut(s)	367, 514
Ecl136II	GAGCTC	2 cut(s)	129, 580
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	131, 582
Eco47I	GGWCC	2 cut(s)	157, 189
Eco53kI	GAGCTC	2 cut(s)	129, 580
Eco57I	CTGAAG	1 cut(s)	755
EcoICRI	GAGCTC	2 cut(s)	129, 580
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	131, 582
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	4 cut(s)	50, 406, 415, 560
FaiI	YATR	7 cut(s)	48, 170, 351, 398, 404, 413, 558
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	46, 402, 411, 556
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	7 cut(s)	117, 122, 177, 180, 202, 210, 640
FokI	GGATG	3 cut(s)	539, 569, 619
FriOI	GRGCYC	2 cut(s)	131, 582
Fsp4HI	GCNGC	7 cut(s)	117, 122, 177, 180, 202, 210, 640
GlaI	GCGC	5 cut(s)	25, 41, 120, 213, 729
GluI	GCNGC	7 cut(s)	117, 122, 177, 180, 202, 210, 640
GsaI	CCCAGC	1 cut(s)	530
HaeII	RGCGCY	2 cut(s)	43, 122
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	4 cut(s)	62, 95, 111, 495
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	5 cut(s)	26, 42, 121, 214, 730
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	50, 406, 415, 560
Hin6I	GCGC	5 cut(s)	24, 40, 119, 212, 728
HinP1I	GCGC	5 cut(s)	24, 40, 119, 212, 728
HincII	GTYRAC	2 cut(s)	717, 781
HindII	GTYRAC	2 cut(s)	717, 781
HinfI	GANTC	3 cut(s)	148, 406, 792
HpaII	CCGG	4 cut(s)	62, 95, 111, 495
HphI	GGTGA	5 cut(s)	229, 256, 509, 520, 590
Hpy166II	GTNNAC	3 cut(s)	13, 717, 781
Hpy188I	TCNGA	4 cut(s)	86, 145, 153, 791
Hpy8I	GTNNAC	3 cut(s)	13, 717, 781
Hpy99I	CGWCG	3 cut(s)	209, 385, 785
HpyAV	CCTTC	2 cut(s)	217, 418
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	383, 393
HpyCH4V	TGCA	6 cut(s)	53, 307, 446, 639, 656, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	586, 653
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	2 cut(s)	383, 393
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	50, 406, 415, 560
HspAI	GCGC	5 cut(s)	24, 40, 119, 212, 728
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	367, 514
LmnI	GCTCC	3 cut(s)	67, 238, 652
Lsp1109I	GCAGC	3 cut(s)	108, 166, 651
LweI	GCATC	1 cut(s)	641
MaeII	ACGT	2 cut(s)	383, 393
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	369, 516
MboI	GATC	2 cut(s)	367, 514
MboII	GAAGA	6 cut(s)	232, 259, 262, 304, 616, 748
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	131, 582
MluCI	AATT	4 cut(s)	184, 361, 441, 651
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	94, 147, 274, 282, 319, 466, 769
MroNI	GCCGGC	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	4 cut(s)	62, 95, 111, 495
MspR9I	CCNGG	2 cut(s)	62, 111
MunI	CAATTG	1 cut(s)	651
MvnI	CGCG	2 cut(s)	26, 212
MwoI	GCNNNNNNNGC	2 cut(s)	586, 653
NaeI	GCCGGC	1 cut(s)	496
NciI	CCSGG	2 cut(s)	62, 111
NdeII	GATC	2 cut(s)	367, 514
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	4 cut(s)	50, 406, 415, 560
NlaIV	GGNNCC	3 cut(s)	158, 300, 499
NmeAIII	GCCGAG	2 cut(s)	150, 608
NmuCI	GTSAC	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	148, 406, 792
Pfl23II	CGTACG	1 cut(s)	27
PflMI	CCANNNNNTGG	3 cut(s)	340, 526, 679
PkrI	GCNGC	7 cut(s)	118, 123, 178, 181, 203, 211, 641
Psp124BI	GAGCTC	2 cut(s)	131, 582
PspFI	CCCAGC	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	158, 300, 499
PspPI	GGNCC	3 cut(s)	157, 189, 497
PstI	CTGCAG	1 cut(s)	641
RsaI	GTAC	4 cut(s)	14, 29, 59, 482
RsaNI	GTAC	4 cut(s)	13, 28, 58, 481
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	2 cut(s)	131, 582
SalI	GTCGAC	1 cut(s)	779
SatI	GCNGC	7 cut(s)	117, 122, 177, 180, 202, 210, 640
Sau3AI	GATC	2 cut(s)	367, 514
Sau96I	GGNCC	3 cut(s)	157, 189, 497
ScrFI	CCNGG	2 cut(s)	62, 111
SduI	GDGCHC	2 cut(s)	131, 582
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	2 cut(s)	157, 189
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	184, 361, 441, 651
SsiI	CCGC	5 cut(s)	116, 177, 201, 210, 601
SstI	GAGCTC	2 cut(s)	131, 582
StyD4I	CCNGG	2 cut(s)	60, 109
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	386, 396
TaqI	TCGA	4 cut(s)	131, 366, 387, 780
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	4 cut(s)	184, 361, 441, 651
TauI	GCSGC	4 cut(s)	119, 179, 204, 212
TfiI	GAWTC	3 cut(s)	148, 406, 792
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	121, 179, 639
Tsp45I	GTSAC	1 cut(s)	461
TspGWI	ACGGA	3 cut(s)	30, 251, 278
Van91I	CCANNNNNTGG	3 cut(s)	340, 526, 679
VpaK11BI	GGWCC	2 cut(s)	157, 189
XcmI	CCANNNNNNNNNTGG	2 cut(s)	409, 527
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.