RLG00000030457

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003959
Physical Location & Seq
Forward (+)
61699599 .. 61700068
470 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030457

Sequence Viewer

Length: 387 bp
ATGACCAAGGTGTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTGCAGAGTACCCGGTGGAGCTGAACCAACGGCTCGGAGAGAAGCTGGTGGAGGCTAAACCCGCTGACAGCGACACCGCGCAGGTGAAGAAGGCGTTCGACTCGGAGCTAGTGAAGAAGATTTACGAGACGGAGTTGTGTGTAAAGGAGGGGCAGAGGAAGATGGTGCCGTTGCAGAGAGTGATGATTTTGGAGGTCAGCCAGTACTTGGAGAACTATCTCTTTCCCAATTTCGATCTCGAAATGGTGACGTTCGAGCACGTTATGTCCATGATTCTCATGGTCAATGAGAAGGTATTGCCTTTTGGAATTGCACTATTTACTTTGGGGTCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

129

Amino Acids

14.78

Weight (kDa)

5.8

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 42 - 114 1.7e-18 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 2 cut(s) 26, 128
AciI CCGC 2 cut(s) 111, 126
AfaI GTAC 4 cut(s) 14, 29, 59, 254
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 70, 94, 157
AluI AGCT 3 cut(s) 70, 94, 157
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 3 cut(s) 26, 42, 130
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 145, 307
BanI GGYRCC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
Bbv12I GWGCWC 1 cut(s) 309
BccI CCATC 1 cut(s) 205
BceAI ACGGC 2 cut(s) 95, 202
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 26, 128
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 111, 126
BspFNI CGCG 2 cut(s) 26, 128
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 6
BstFNI CGCG 2 cut(s) 26, 128
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 3 cut(s) 26, 42, 130
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 2 cut(s) 26, 128
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 3 cut(s) 26, 42, 130
Csp6I GTAC 4 cut(s) 13, 28, 58, 253
CviAII CATG 3 cut(s) 47, 319, 328
CviJI RGCY 6 cut(s) 70, 82, 94, 104, 157, 249
CviKI_1 RGCY 6 cut(s) 70, 82, 94, 104, 157, 249
CviQI GTAC 4 cut(s) 13, 28, 58, 253
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 50, 322, 331
FaiI YATR 4 cut(s) 48, 314, 320, 329
FatI CATG 3 cut(s) 46, 318, 327
FauI CCCGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 158
GlaI GCGC 3 cut(s) 25, 41, 129
HaeII RGCGCY 1 cut(s) 43
HapII CCGG 1 cut(s) 62
HhaI GCGC 3 cut(s) 26, 42, 130
Hin1II CATG 3 cut(s) 50, 322, 331
Hin6I GCGC 3 cut(s) 24, 40, 128
HinP1I GCGC 3 cut(s) 24, 40, 128
HinfI GANTC 2 cut(s) 149, 322
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 145, 307
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 86, 154
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 133, 334
HpyCH4IV ACGT 2 cut(s) 299, 309
HpyCH4V TGCA 3 cut(s) 53, 223, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 299, 309
Hsp92II CATG 3 cut(s) 50, 322, 331
HspAI GCGC 3 cut(s) 24, 40, 128
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 67, 154
LpnPI CCDG 5 cut(s) 6, 75, 80, 116, 263
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 299, 309
MaeIII GTNAC 2 cut(s) 295, 378
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 4 cut(s) 148, 175, 178, 220
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 277, 357
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 4 cut(s) 94, 190, 198, 235
MroXI GAANNNNTTC 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 26, 128
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 50, 322, 331
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 295, 378
PaqCI CACCTGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 322
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 256
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 216
RsaI GTAC 4 cut(s) 14, 29, 59, 254
RsaNI GTAC 4 cut(s) 13, 28, 58, 253
Sau3AI GATC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 309
SetI ASST 9 cut(s) 12, 72, 96, 135, 159, 246, 302, 312, 345
Sse9I AATT 2 cut(s) 277, 357
SsiI CCGC 2 cut(s) 111, 126
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 2 cut(s) 302, 312
TaqI TCGA 4 cut(s) 147, 282, 288, 303
TasI AATT 2 cut(s) 277, 357
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 322
TseFI GTSAC 2 cut(s) 295, 378
Tsp45I GTSAC 2 cut(s) 295, 378
TspGWI ACGGA 2 cut(s) 30, 194
Van91I CCANNNNNTGG 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.