Rw1G003520

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003959
Physical Location & Seq
Reverse (-)
6571542 .. 6572694
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003520.1

Sequence Viewer

Length: 213 bp
ATGTCCATGATTGTCATGGTCAATGAGAAGTTTCGAGAGAATGTGGCAGCTTGGGTATGCTTTCATGACCGGAAAGATGCGTTTAAAGGATTCCTTGGAAGGGTTCTTCGGCTTAAATCGGGACCCAACGACTTACGCCACAGTTCATTCTTCTTTACGGACTTTACCTCAGTGAATACTAGTCTGATGCAAAAAGGGGACATGGAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

70

Amino Acids

8.09

Weight (kDa)

9.03

Isoelectric Point (pI)

14.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 1 - 42 7.7e-12 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 123, 124
BmsI GCATC 2 cut(s) 67, 177
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 123, 124
BssECI CCNNGG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 4 cut(s) 7, 16, 65, 202
CviJI RGCY 2 cut(s) 50, 112
CviKI_1 RGCY 2 cut(s) 50, 112
DdeI CTNAG 1 cut(s) 169
DraI TTTAAA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 10, 19, 68, 205
FaiI YATR 5 cut(s) 8, 17, 58, 66, 203
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 135
FatI CATG 4 cut(s) 6, 15, 64, 201
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 48
HapII CCGG 1 cut(s) 70
Hin1II CATG 4 cut(s) 10, 19, 68, 205
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 35, 65, 120
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 4 cut(s) 10, 19, 68, 205
KflI GGGWCCC 1 cut(s) 122
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 2 cut(s) 67, 177
MaeI CTAG 1 cut(s) 180
MboII GAAGA 2 cut(s) 98, 142
MnlI CCTC 2 cut(s) 178, 199
MseI TTAA 2 cut(s) 84, 114
MspI CCGG 1 cut(s) 70
NlaIII CATG 4 cut(s) 10, 19, 68, 205
NlaIV GGNNCC 2 cut(s) 123, 124
PagI TCATGA 1 cut(s) 64
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 123, 124
PspPI GGNCC 1 cut(s) 122
PspPPI RGGWCCY 1 cut(s) 122
SaqAI TTAA 2 cut(s) 84, 114
SatI GCNGC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 122
SetI ASST 2 cut(s) 52, 170
SfaNI GCATC 2 cut(s) 67, 177
SgeI CNNG 9 cut(s) 19, 28, 47, 63, 77, 82, 107, 132, 192
SinI GGWCC 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 179
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 34
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 84, 114
Tru9I TTAA 2 cut(s) 84, 114
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 53, 135
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.