Rh1AG042600

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003959
Physical Location & Seq
Reverse (-)
7385821 .. 7408673
22853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG042600.1

Sequence Viewer

Length: 948 bp
ATGACCAAGGTCTACGGAACAGGCACGTACGATTTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCAGCAGCTCGGAGAGAAGCCGGTGGAGGCTAAACCTGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCGAATTGGTCCAAAGCTGGCGGCGACGCCGCGCAGGTGAAGAAGGCGTTCGACACGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACGGTGCCGTTGCTGAGAGTGATGATTTTGGAGGTCAGCCAGTATTTGGAGAACTATCTCTTTCCCAATTTCGATCCCGAAACGGCGACGTTCGAGCACGTTATGTCCATGATTCTCATGGTCAATGAGAAGTTTCGAGAGAATGTGGCAGCTTGGGTATGCTTTCATGACCGGAAAGATGCTTTTAAGGGATTCCTTGGGAGGGTTCTTCGGCTTAAATCGGGACCCAACGACTTACGCCACAGTTCATTCTTCTTTATGGACTTTACCTCAGTGAATGCTTGGTCTGATGCAAAAAGGGGATATGGAGGCGTGAGTGACCCAAATGTGCGAAAGGCTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTAGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGTTGCTTCCAGCATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCGGCCCAATTTTAAGTAATCTGTATGGTGTAGATTGGGAGAGCAAACTTGAGGCAAAGAAGTTGGAGGGCAATTTTCTATACTTGAGCCTTTTAAGCAAAACTTGTTTGATGATTTATGATGAGTATTATCTATATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

315

Amino Acids

36.0

Weight (kDa)

8.17

Isoelectric Point (pI)

22.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 55 - 172 3.6e-33 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 212
AciI CCGC 4 cut(s) 116, 177, 201, 210
AclI AACGTT 1 cut(s) 750
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 725
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 29, 59
AfiI CCNNNNNNNGG 2 cut(s) 340, 496
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 740, 772
Alw21I GWGCWC 2 cut(s) 131, 393
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 362
AoxI GGCC 2 cut(s) 804, 808
ApeKI GCWGC 4 cut(s) 79, 121, 179, 443
ApoI RAATTY 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 3 cut(s) 42, 121, 214
AspS9I GGNCC 4 cut(s) 157, 189, 518, 809
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 229, 256
AvaII GGWCC 3 cut(s) 157, 189, 518
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 131, 393
BbvI GCAGC 4 cut(s) 91, 108, 166, 455
BceAI ACGGC 2 cut(s) 286, 393
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 672
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 8 cut(s) 80, 117, 122, 177, 180, 202, 210, 444
BlsI GCNGC 8 cut(s) 81, 118, 123, 178, 181, 203, 211, 445
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 3 cut(s) 157, 189, 518
BmgT120I GGNCC 4 cut(s) 157, 189, 518, 809
BmiI GGNNCC 4 cut(s) 158, 300, 519, 520
BmrFI CCNGG 2 cut(s) 62, 111
BmsI GCATC 2 cut(s) 463, 574
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 875, 910
BpuMI CCSGG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 6, 490
BsaWI WCCGGW 1 cut(s) 465
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 496
Bse118I RCCGGY 2 cut(s) 94, 806
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 6, 490
BseLI CCNNNNNNNGG 2 cut(s) 340, 496
BseMII CTCAG 2 cut(s) 299, 579
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 4 cut(s) 91, 108, 166, 455
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 806, 810
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 131, 393
BsiSI CCGG 4 cut(s) 62, 95, 466, 807
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 170, 531
BslI CCNNNNNNNGG 2 cut(s) 340, 496
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 170, 531
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 2 cut(s) 806, 810
Bsp1286I GDGCHC 2 cut(s) 131, 393
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 4 cut(s) 116, 177, 201, 210
BspANI GGCC 2 cut(s) 806, 810
BspCNI CTCAG 2 cut(s) 300, 578
BspFNI CGCG 1 cut(s) 212
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 158, 300, 519, 520
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 94, 806
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 94, 806
BssECI CCNNGG 2 cut(s) 6, 490
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 6, 490
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 298, 539, 792
BstACI GRCGYC 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 199, 808
BstDEI CTNAG 2 cut(s) 308, 565
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 3 cut(s) 42, 121, 214
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 76, 900
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 714
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 4 cut(s) 91, 108, 166, 455
BstV2I GAAGAC 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 766
BsuRI GGCC 2 cut(s) 806, 810
BtsIMutI CAGTG 2 cut(s) 573, 653
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 199, 808
CciI TCATGA 1 cut(s) 460
CfoI GCGC 3 cut(s) 42, 121, 214
Cfr10I RCCGGY 2 cut(s) 94, 806
Cfr13I GGNCC 4 cut(s) 157, 189, 518, 809
CseI GACGC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 2 cut(s) 28, 58
CviAII CATG 5 cut(s) 47, 403, 412, 461, 711
CviQI GTAC 2 cut(s) 28, 58
DdeI CTNAG 2 cut(s) 308, 565
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 6, 490
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 3 cut(s) 157, 189, 518
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 6, 490
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 2 cut(s) 6, 490
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 5 cut(s) 50, 406, 415, 464, 714
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 2 cut(s) 170, 531
FatI CATG 5 cut(s) 46, 402, 411, 460, 710
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 8 cut(s) 80, 117, 122, 177, 180, 202, 210, 444
FriOI GRGCYC 1 cut(s) 131
FseI GGCCGGCC 1 cut(s) 810
Fsp4HI GCNGC 8 cut(s) 80, 117, 122, 177, 180, 202, 210, 444
FspBI CTAG 1 cut(s) 672
GlaI GCGC 3 cut(s) 41, 120, 213
GluI GCNGC 8 cut(s) 80, 117, 122, 177, 180, 202, 210, 444
HaeII RGCGCY 2 cut(s) 43, 122
HaeIII GGCC 2 cut(s) 806, 810
HapII CCGG 4 cut(s) 62, 95, 466, 807
HgaI GACGC 1 cut(s) 215
HhaI GCGC 3 cut(s) 42, 121, 214
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 50, 406, 415, 464, 714
Hin6I GCGC 3 cut(s) 40, 119, 212
HinP1I GCGC 3 cut(s) 40, 119, 212
HinfI GANTC 3 cut(s) 148, 406, 486
HpaII CCGG 4 cut(s) 62, 95, 466, 807
HphI GGTGA 2 cut(s) 229, 256
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 5 cut(s) 86, 145, 153, 583, 741
Hpy188III TCNNGA 4 cut(s) 371, 431, 461, 516
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 209, 385
HpyAV CCTTC 2 cut(s) 217, 271
HpyCH4III ACNGT 3 cut(s) 298, 539, 792
HpyCH4IV ACGT 4 cut(s) 26, 383, 393, 750
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 900
HpyF3I CTNAG 2 cut(s) 308, 565
HpySE526I ACGT 4 cut(s) 26, 383, 393, 750
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 50, 406, 415, 464, 714
HspAI GCGC 3 cut(s) 40, 119, 212
KflI GGGWCCC 1 cut(s) 518
KroI GCCGGC 1 cut(s) 806
KroNI GCCGGC 1 cut(s) 808
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 3 cut(s) 67, 238, 781
Lsp1109I GCAGC 4 cut(s) 91, 108, 166, 455
LweI GCATC 2 cut(s) 463, 574
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 1 cut(s) 672
MaeII ACGT 4 cut(s) 26, 383, 393, 750
MaeIII GTNAC 1 cut(s) 611
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 7 cut(s) 232, 259, 262, 304, 494, 538, 651
MhlI GDGCHC 2 cut(s) 131, 393
MluCI AATT 5 cut(s) 184, 361, 725, 813, 877
MmeI TCCRAC 3 cut(s) 123, 640, 849
MroNI GCCGGC 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 6 cut(s) 480, 510, 777, 801, 818, 899
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 4 cut(s) 62, 95, 466, 807
MspR9I CCNGG 2 cut(s) 62, 111
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 76, 900
NaeI GCCGGC 1 cut(s) 808
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 367
NgoMIV GCCGGC 1 cut(s) 806
NlaIII CATG 5 cut(s) 50, 406, 415, 464, 714
NlaIV GGNNCC 4 cut(s) 158, 300, 519, 520
NmeAIII GCCGAG 2 cut(s) 79, 150
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 714
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 205
PciI ACATGT 1 cut(s) 710
PctI GAATGC 1 cut(s) 577
PdiI GCCGGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 148, 406, 486
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 8 cut(s) 81, 118, 123, 178, 181, 203, 211, 445
Ppu21I YACGTR 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 518
PscI ACATGT 1 cut(s) 710
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 4 cut(s) 158, 300, 519, 520
PspPI GGNCC 4 cut(s) 157, 189, 518, 809
PspPPI RGGWCCY 1 cut(s) 518
RigI GGCCGGCC 1 cut(s) 810
RsaI GTAC 2 cut(s) 29, 59
RsaNI GTAC 2 cut(s) 28, 58
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 6 cut(s) 480, 510, 777, 801, 818, 899
SatI GCNGC 8 cut(s) 80, 117, 122, 177, 180, 202, 210, 444
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 4 cut(s) 157, 189, 518, 809
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 2 cut(s) 131, 393
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 2 cut(s) 463, 574
SinI GGWCC 3 cut(s) 157, 189, 518
SmlI CTYRAG 2 cut(s) 854, 889
SmoI CTYRAG 2 cut(s) 854, 889
Sse9I AATT 5 cut(s) 184, 361, 725, 813, 877
SsiI CCGC 4 cut(s) 116, 177, 201, 210
SspMI CTAG 1 cut(s) 672
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
StyI CCWWGG 2 cut(s) 6, 490
TaaI ACNGT 3 cut(s) 298, 539, 792
TaiI ACGT 4 cut(s) 29, 386, 396, 753
TaqI TCGA 5 cut(s) 131, 231, 366, 387, 430
TasI AATT 5 cut(s) 184, 361, 725, 813, 877
TauI GCSGC 4 cut(s) 119, 179, 204, 212
TfiI GAWTC 3 cut(s) 148, 406, 486
Tru1I TTAA 6 cut(s) 480, 510, 777, 801, 818, 899
Tru9I TTAA 6 cut(s) 480, 510, 777, 801, 818, 899
TscAI CASTG 2 cut(s) 573, 653
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 4 cut(s) 79, 121, 179, 443
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 2 cut(s) 449, 531
TspGWI ACGGA 4 cut(s) 30, 251, 278, 651
TspRI CASTG 2 cut(s) 573, 653
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 3 cut(s) 157, 189, 518
XapI RAATTY 1 cut(s) 725
XceI RCATGY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.