RchiOBHm_Chr1g0327481

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002765
Physical Location & Seq
Reverse (-)
16311156 .. 16313278
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
ATGGATATGGCAGGGGATACAAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCAGGCCTCGCCACTGCTCTTGCTCTTCACAGAAAGGGCATAAGAAGCTTGGTCCTAGAAAAATCAAAGAGTTTACAAGCCACCGGAGGTATCGTTGTGCATTCTAATGGTTGGCATGCCCTCGAACAGCTCGGCGTAGCCCCATATCTTAGACAAACTGCTGATCCTATACTATCGAAAGAAGAAATGCGATGTGTGAGAAGGACTGATCTGGTTAATATTTTGGCTCAAAACCTGCCACTCAACACTGTACGTTATGGCTCCAACGTACTTTCTATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTAGCTTAAACGCCAAGGTTGTGATCGGATGCGACGGAGTGAACTCCAACATAACAAATCTGATTGGGGTGAAGGCCCCGAGTAGACTCAACGTAATGGCAGTAAGAAGCATTACAATATATCCAGATGGCCATAAATTCGGCAGTGAGTTTAAGATGATAAAAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTTATTGGTTCATCACTGGAAAATATTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTTCGAAATTGATTATGAACTTCTCAACTGAGTCAGTGAAGGATTTTCCTAGTAGCATTAAAGAGATGGTCAACAATTGCTGGCTAGAGTACTTACATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGTACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTGGCACGAAAGGCTGTCGTCGATGGTCCAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTCACTATCGAATCAACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATATATTGTGCTCATGGTGGTCCTATTTCGCAACTCATTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

384

Amino Acids

42.37

Weight (kDa)

9.21

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 10 - 306 1.4e-21 FAD binding domain
DAO PF01266 10 - 46 2.9e-07 FAD dependent oxidoreductase
FAD_binding_2 PF00890 10 - 44 3.8e-06 FAD binding domain
Lycopene_cycl PF05834 10 - 144 9.3e-06 Lycopene cyclase protein
NAD_binding_8 PF13450 13 - 69 1.2e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 297
AccBSI CCGCTC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 466
AciI CCGC 2 cut(s) 876, 997
AclWI GGATC 3 cut(s) 212, 335, 348
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 5 cut(s) 306, 324, 740, 758, 793
AgsI TTSAA 3 cut(s) 368, 374, 637
AjnI CCWGG 2 cut(s) 588, 937
AluBI AGCT 5 cut(s) 102, 184, 387, 1069, 1078
AluI AGCT 5 cut(s) 102, 184, 387, 1069, 1078
Alw21I GWGCWC 1 cut(s) 1095
AlwI GGATC 3 cut(s) 212, 335, 348
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 3 cut(s) 58, 456, 511
ApoI RAATTY 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 106, 457, 935, 1102
AsuHPI GGTGA 4 cut(s) 463, 563, 765, 953
AsuII TTCGAA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 3 cut(s) 106, 935, 1102
BalI TGGCCA 1 cut(s) 513
BamHI GGATCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 1095
BccI CCATC 4 cut(s) 503, 709, 926, 1042
BciT130I CCWGG 2 cut(s) 590, 939
BciVI GTATCC 1 cut(s) 10
BfaI CTAG 5 cut(s) 110, 384, 699, 734, 903
BfuAI ACCTGC 1 cut(s) 297
BfuI GTATCC 1 cut(s) 10
BglII AGATCT 1 cut(s) 639
BisI GCNGC 1 cut(s) 876
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 1 cut(s) 877
BmcAI AGTACT 1 cut(s) 740
Bme1390I CCNGG 2 cut(s) 590, 939
Bme18I GGWCC 3 cut(s) 106, 935, 1102
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 4 cut(s) 106, 457, 935, 1102
BmiI GGNNCC 3 cut(s) 316, 342, 459
BmrFI CCNGG 2 cut(s) 590, 939
BmsI GCATC 2 cut(s) 401, 820
BpiI GAAGAC 1 cut(s) 891
Bpu10I CCTNAGC 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 871
Bpu14I TTCGAA 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 396, 776
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 2 cut(s) 359, 613
Bse3DI GCAATG 2 cut(s) 849, 855
BseBI CCWGG 2 cut(s) 590, 939
BseDI CCNNGG 2 cut(s) 396, 776
BseGI GGATG 1 cut(s) 416
BseMI GCAATG 2 cut(s) 849, 855
BseMII CTCAG 4 cut(s) 669, 765, 875, 885
BseNI ACTGG 2 cut(s) 359, 613
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 60, 458, 513
BsiEI CGRYCG 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 1095
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 138
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 60, 458, 513
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 1095
Bsp1407I TGTACA 1 cut(s) 791
Bsp143I GATC 6 cut(s) 217, 262, 340, 405, 639, 770
Bsp1720I GCTNAGC 1 cut(s) 871
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 2 cut(s) 876, 997
BspANI GGCC 3 cut(s) 60, 458, 513
BspCNI CTCAG 4 cut(s) 670, 764, 874, 884
BspLI GGNNCC 3 cut(s) 316, 342, 459
BspMI ACCTGC 1 cut(s) 297
BspPI GGATC 3 cut(s) 212, 335, 348
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 849, 855
BsrGI TGTACA 1 cut(s) 791
BsrI ACTGG 2 cut(s) 359, 613
BssECI CCNNGG 2 cut(s) 396, 776
BssMI GATC 6 cut(s) 217, 262, 340, 405, 639, 770
BssT1I CCWWGG 2 cut(s) 396, 776
Bst2UI CCWGG 2 cut(s) 590, 939
Bst4CI ACNGT 5 cut(s) 304, 562, 814, 820, 1142
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 171, 731, 840, 1132
BstDEI CTNAG 6 cut(s) 203, 678, 751, 861, 871, 1013
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 6 cut(s) 220, 265, 343, 408, 642, 773
BstMBI GATC 6 cut(s) 217, 262, 340, 405, 639, 770
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 5 cut(s) 99, 830, 839, 920, 1075
BstNI CCWGG 2 cut(s) 590, 939
BstNSI RCATGY 2 cut(s) 173, 842
BstSCI CCNGG 2 cut(s) 588, 937
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 2 cut(s) 340, 639
BstYI RGATCY 2 cut(s) 340, 639
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 60, 458, 513
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 2 cut(s) 66, 532
BtsIMutI CAGTG 6 cut(s) 66, 300, 532, 606, 690, 819
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 4 cut(s) 171, 731, 840, 1132
Cfr13I GGNCC 4 cut(s) 106, 457, 935, 1102
CseI GACGC 1 cut(s) 896
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 5 cut(s) 305, 323, 739, 757, 792
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 5 cut(s) 170, 577, 777, 839, 1096
CviQI GTAC 5 cut(s) 305, 323, 739, 757, 792
DdeI CTNAG 6 cut(s) 203, 678, 751, 861, 871, 1013
DpnI GATC 6 cut(s) 219, 264, 342, 407, 641, 772
DpnII GATC 6 cut(s) 217, 262, 340, 405, 639, 770
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 396, 776
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 3 cut(s) 106, 935, 1102
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 588, 937
EcoT14I CCWWGG 2 cut(s) 396, 776
ErhI CCWWGG 2 cut(s) 396, 776
FaeI CATG 5 cut(s) 173, 580, 780, 842, 1099
FatI CATG 5 cut(s) 169, 576, 776, 838, 1095
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 5 cut(s) 110, 384, 699, 734, 903
GluI GCNGC 1 cut(s) 876
HaeIII GGCC 3 cut(s) 60, 458, 513
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 896
Hin1II CATG 5 cut(s) 173, 580, 780, 842, 1099
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 5 cut(s) 468, 680, 847, 1017, 1028
HpaII CCGG 1 cut(s) 138
HphI GGTGA 4 cut(s) 463, 563, 765, 953
Hpy166II GTNNAC 5 cut(s) 128, 424, 467, 721, 794
Hpy188I TCNGA 5 cut(s) 410, 444, 566, 754, 1043
Hpy188III TCNNGA 2 cut(s) 506, 637
Hpy8I GTNNAC 5 cut(s) 128, 424, 467, 721, 794
Hpy99I CGWCG 2 cut(s) 419, 932
HpyAV CCTTC 4 cut(s) 249, 448, 623, 682
HpyCH4III ACNGT 5 cut(s) 304, 562, 814, 820, 1142
HpyCH4IV ACGT 3 cut(s) 307, 321, 474
HpyCH4V TGCA 4 cut(s) 154, 824, 838, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 830, 839, 920, 1075
HpyF3I CTNAG 6 cut(s) 203, 678, 751, 861, 871, 1013
HpySE526I ACGT 3 cut(s) 307, 321, 474
Hsp92II CATG 5 cut(s) 173, 580, 780, 842, 1099
Kzo9I GATC 6 cut(s) 217, 262, 340, 405, 639, 770
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 320
LweI GCATC 2 cut(s) 401, 820
MabI ACCWGGT 1 cut(s) 588
MaeI CTAG 5 cut(s) 110, 384, 699, 734, 903
MaeII ACGT 3 cut(s) 307, 321, 474
MaeIII GTNAC 3 cut(s) 346, 556, 814
MalI GATC 6 cut(s) 219, 264, 342, 407, 641, 772
MbiI CCGCTC 1 cut(s) 997
MboI GATC 6 cut(s) 217, 262, 340, 405, 639, 770
MboII GAAGA 6 cut(s) 38, 71, 248, 356, 896, 1064
MfeI CAATTG 1 cut(s) 724
MflI RGATCY 2 cut(s) 340, 639
MhlI GDGCHC 1 cut(s) 1095
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 3 cut(s) 518, 656, 724
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 4 cut(s) 462, 689, 841, 1011
MmeI TCCRAC 4 cut(s) 318, 342, 453, 544
MnlI CCTC 3 cut(s) 71, 134, 185
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 4 cut(s) 270, 389, 534, 708
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 590, 939
MunI CAATTG 1 cut(s) 724
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 2 cut(s) 590, 939
MwoI GCNNNNNNNGC 5 cut(s) 99, 830, 839, 920, 1075
NcoI CCATGG 1 cut(s) 776
NdeII GATC 6 cut(s) 217, 262, 340, 405, 639, 770
NlaIII CATG 5 cut(s) 173, 580, 780, 842, 1099
NlaIV GGNNCC 3 cut(s) 316, 342, 459
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 2 cut(s) 173, 842
NspV TTCGAA 1 cut(s) 653
PaeI GCATGC 2 cut(s) 173, 842
PceI AGGCCT 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 1028
PkrI GCNGC 1 cut(s) 877
PleI GAGTC 4 cut(s) 462, 688, 841, 1011
PpsI GAGTC 4 cut(s) 462, 688, 841, 1011
Psp6I CCWGG 2 cut(s) 588, 937
PspGI CCWGG 2 cut(s) 588, 937
PspN4I GGNNCC 3 cut(s) 316, 342, 459
PspPI GGNCC 4 cut(s) 106, 457, 935, 1102
PsuI RGATCY 2 cut(s) 340, 639
RsaI GTAC 5 cut(s) 306, 324, 740, 758, 793
RsaNI GTAC 5 cut(s) 305, 323, 739, 757, 792
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 270, 389, 534, 708
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 6 cut(s) 217, 262, 340, 405, 639, 770
Sau96I GGNCC 4 cut(s) 106, 457, 935, 1102
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 4 cut(s) 462, 689, 841, 1011
ScrFI CCNGG 2 cut(s) 590, 939
SduI GDGCHC 1 cut(s) 1095
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 2 cut(s) 401, 820
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 3 cut(s) 106, 935, 1102
SmiMI CAYNNNNRTG 1 cut(s) 159
SphI GCATGC 2 cut(s) 173, 842
Sse9I AATT 3 cut(s) 518, 656, 724
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 2 cut(s) 876, 997
SspI AATATT 2 cut(s) 274, 617
SspMI CTAG 5 cut(s) 110, 384, 699, 734, 903
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 588, 937
StyI CCWWGG 2 cut(s) 396, 776
TaaI ACNGT 5 cut(s) 304, 562, 814, 820, 1142
TaiI ACGT 3 cut(s) 310, 324, 477
TaqI TCGA 5 cut(s) 177, 230, 653, 930, 1026
TasI AATT 3 cut(s) 518, 656, 724
TatI WGTACW 3 cut(s) 738, 756, 791
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 4 cut(s) 270, 389, 534, 708
Tru9I TTAA 4 cut(s) 270, 389, 534, 708
TscAI CASTG 6 cut(s) 73, 307, 532, 613, 690, 819
TseFI GTSAC 1 cut(s) 814
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 5 cut(s) 592, 680, 844, 996, 1050
TspGWI ACGGA 2 cut(s) 432, 840
TspRI CASTG 6 cut(s) 73, 307, 532, 613, 690, 819
VpaK11BI GGWCC 3 cut(s) 106, 935, 1102
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 173, 842
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 5 cut(s) 110, 384, 699, 734, 903
ZrmI AGTACT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.