RchiOBHm_Chr1g0337011

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004968
Physical Location & Seq
Forward (+)
28673606 .. 28676196
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGTACGTGGACAGTACTAGTGCTGCAGCTGCCTGCAACTTTGATCCCAGTACTAATAACCCCATGTCAGAATCAGCCCCAGAAGTTGTCCTCCACAGCCACAACACCACCACCACCTTTGCTCATGAAGAAAACTTGAGGAGGCTCTCCATGGAAGAAGAGCTCTCTAACTACCACCACAACGCCGCCATGGAAATTGAGCAGCAGTTTCAGAACGAGATGGATTTTGGCACCATGGACCAAAACACCACCACCAATGCTCATTTCGTTAACCCCTTTGACACCCACCAAGCCACAAACTGGGACACTTCTAATGAAATGCAACAACAATTGCCCCCAACACCTGACCTGCTCAGCCTTTTCCACTTGCCCTCCTCCTCTTCTGTGCTCCCACACTCCTCCATTAACTTCCCCCATCCCAAGACCCCGGGAGGCTGTTTCCCGGGGTCTTTCGGGTATGAGGCTCTGCCCGAGACTCCTTCTGGGGCGGCGGCCTCTTCGGTCATGTATGACCCAATGTTCCACCTGAACCAGCTGCCTCCTCAGCCGCAGCCGCCGCTGTTCAGGGAGCTGCTGCAGTCCCTGCCACATGGGTACAACTTGGGTGGGTCCAGAAATGGGTCGAGCTTGTTTAGCAATGGTGGGGATGAGGTGGACGATGGGAGTAGGCAGTTGTTTGAGAATGGGGTGCTGGAGTTTTCCAAGGAGATGAAGCCATTTGGAAGAGGAAGAGGTGGGAATAAAGGGACCAAACACTTTGCTACTGAGCGCCAAAGGAGAGTCCAGCTCAATGACAAGTTTCATGCTTTGAGGGAATTGGTTCCAAACCCAACCAAGCCTGATCGAGCATCTGTAGTGGGAGATGCCATTGATTACATACAGGAGCTCAAGAGGACTGTGAGTGAGCTGAAACTGCTGGTGGAGAAGAAAAGGTGTGGGAGAGAGAGGAGCAAGAGGCACAAGACTGAGCAGGACATAGGTGCTGGAGACGATGATGAGAGCTGTAACATGAAGCCTCTTGGTGACCATGATCATGACCACTCCTACAACAATGGGTCTCTGAGGAGCTCATGGCTTCAAAGGAAGTCCAAAGACACCGAGGTGGACGTCCGGATCATTGATGATGAAGTCACCATCAAACTGGTCCAGAGGAAGAAGATCAATCTGTTGCTGTCTGTGTCCAAGCTTCTTGATGAGTTGCAGCTTGAACTTCATCATGCTGCTGGGGGACACATTGGAAATTCATACAGCTTCTTGTTCAACACCAAGATGTATGAAGGGTCTTCTTTGTATGCAAGTGCCATTGCCAACAAGCTCATTGAGACTCTGGATAGACAGTATGCAGCAATTCCACCTACCAATAGTTATTAG

Protein Analysis

456

Amino Acids

51.0

Weight (kDa)

5.7

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 250 - 297 1.6e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1110
Acc36I ACCTGC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 1110
AciI CCGC 6 cut(s) 186, 488, 491, 548, 554, 557
AclWI GGATC 2 cut(s) 38, 1121
AcsI RAATTY 1 cut(s) 1240
AcyI GRCGYC 1 cut(s) 1107
AfaI GTAC 4 cut(s) 5, 16, 52, 596
AfiI CCNNNNNNNGG 2 cut(s) 300, 618
AgsI TTSAA 3 cut(s) 1079, 1208, 1261
AhlI ACTAGT 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AleI CACNNNNGTG 1 cut(s) 1100
Alw21I GWGCWC 4 cut(s) 165, 390, 888, 1070
Alw26I GTCTC 4 cut(s) 467, 981, 1062, 1316
AlwI GGATC 2 cut(s) 38, 1121
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 3 cut(s) 427, 442, 470
Aor13HI TCCGGA 1 cut(s) 1110
AoxI GGCC 1 cut(s) 492
ApoI RAATTY 1 cut(s) 1240
Asp700I GAANNNNTTC 1 cut(s) 819
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 4 cut(s) 238, 609, 747, 1144
AsuC2I CCSGG 4 cut(s) 428, 429, 443, 444
AsuHPI GGTGA 2 cut(s) 1034, 1123
AvaI CYCGRG 3 cut(s) 427, 442, 470
AvaII GGWCC 4 cut(s) 238, 609, 747, 1144
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 3 cut(s) 165, 888, 1070
BbsI GAAGAC 1 cut(s) 1275
Bbv12I GWGCWC 4 cut(s) 165, 390, 888, 1070
BbvCI CCTCAGC 1 cut(s) 543
BccI CCATC 4 cut(s) 214, 423, 653, 1142
BclI TGATCA 1 cut(s) 1030
BcnI CCSGG 4 cut(s) 428, 429, 443, 444
BcoDI GTCTC 4 cut(s) 467, 981, 1062, 1316
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 3 cut(s) 24, 575, 852
BfoI RGCGCY 1 cut(s) 772
BfuAI ACCTGC 1 cut(s) 357
BlpI GCTNAGC 1 cut(s) 353
BmcAI AGTACT 2 cut(s) 16, 52
Bme1390I CCNGG 4 cut(s) 428, 429, 443, 444
Bme18I GGWCC 4 cut(s) 238, 609, 747, 1144
BmeT110I CYCGRG 3 cut(s) 427, 442, 470
BmgT120I GGNCC 4 cut(s) 238, 609, 747, 1144
BmiI GGNNCC 4 cut(s) 232, 610, 748, 822
BmrFI CCNGG 4 cut(s) 428, 429, 443, 444
BmrI ACTGGG 2 cut(s) 42, 310
BmsI GCATC 2 cut(s) 853, 857
BmuI ACTGGG 2 cut(s) 42, 310
BpiI GAAGAC 1 cut(s) 1275
BplI GAGNNNNNCTC 2 cut(s) 771, 803
BpmI CTGGAG 2 cut(s) 713, 1005
Bpu10I CCTNAGC 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 353
BpuEI CTTGAG 2 cut(s) 157, 872
BpuMI CCSGG 4 cut(s) 428, 429, 443, 444
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 1107
BsaI GGTCTC 1 cut(s) 1062
BsaJI CCNNGG 9 cut(s) 150, 189, 234, 426, 427, 442, 443, 702, 1098
BsaWI WCCGGW 1 cut(s) 1110
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 618
Bse1I ACTGG 3 cut(s) 48, 305, 1146
Bse3DI GCAATG 2 cut(s) 643, 1302
BseAI TCCGGA 1 cut(s) 1110
BseDI CCNNGG 9 cut(s) 150, 189, 234, 426, 427, 442, 443, 702, 1098
BseGI GGATG 2 cut(s) 415, 652
BseLI CCNNNNNNNGG 2 cut(s) 300, 618
BseMI GCAATG 2 cut(s) 643, 1302
BseMII CTCAG 5 cut(s) 367, 557, 756, 957, 1052
BseNI ACTGG 3 cut(s) 48, 305, 1146
BseRI GAGGAG 7 cut(s) 154, 364, 367, 388, 531, 961, 1078
BseYI CCCAGC 1 cut(s) 1223
BshFI GGCC 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 4 cut(s) 165, 390, 888, 1070
BsiHKCI CYCGRG 3 cut(s) 427, 442, 470
BsiSI CCGG 3 cut(s) 428, 443, 1111
BslFI GGGAC 4 cut(s) 317, 565, 760, 1242
BslI CCNNNNNNNGG 2 cut(s) 300, 618
BsmAI GTCTC 4 cut(s) 467, 981, 1062, 1316
BsmBI CGTCTC 1 cut(s) 981
BsmFI GGGAC 4 cut(s) 317, 565, 760, 1242
BsnI GGCC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 1062
BsoBI CYCGRG 3 cut(s) 427, 442, 470
Bsp1286I GDGCHC 4 cut(s) 165, 390, 888, 1070
Bsp13I TCCGGA 1 cut(s) 1110
Bsp143I GATC 5 cut(s) 43, 841, 1030, 1113, 1158
Bsp1720I GCTNAGC 1 cut(s) 353
Bsp19I CCATGG 3 cut(s) 150, 189, 234
BspACI CCGC 6 cut(s) 186, 488, 491, 548, 554, 557
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 5 cut(s) 366, 556, 757, 958, 1053
BspEI TCCGGA 1 cut(s) 1110
BspHI TCATGA 2 cut(s) 124, 1033
BspLI GGNNCC 4 cut(s) 232, 610, 748, 822
BspMAI CTGCAG 2 cut(s) 28, 579
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 38, 1121
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 1062
BsrDI GCAATG 2 cut(s) 643, 1302
BsrI ACTGG 3 cut(s) 48, 305, 1146
BssECI CCNNGG 9 cut(s) 150, 189, 234, 426, 427, 442, 443, 702, 1098
BssMI GATC 5 cut(s) 43, 841, 1030, 1113, 1158
BssNI GRCGYC 1 cut(s) 1107
BssT1I CCWWGG 4 cut(s) 150, 189, 234, 702
Bst4CI ACNGT 3 cut(s) 14, 898, 1338
Bst6I CTCTTC 5 cut(s) 153, 385, 502, 718, 724
BstACI GRCGYC 1 cut(s) 1107
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 5 cut(s) 353, 543, 765, 966, 1061
BstDSI CCRYGG 3 cut(s) 150, 189, 234
BstEII GGTNACC 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 415, 652
BstH2I RGCGCY 1 cut(s) 772
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 5 cut(s) 46, 844, 1033, 1116, 1161
BstMAI GTCTC 4 cut(s) 467, 981, 1062, 1316
BstMBI GATC 5 cut(s) 43, 841, 1030, 1113, 1158
BstMWI GCNNNNNNNGC 7 cut(s) 29, 544, 553, 556, 583, 633, 913
BstPI GGTNACC 1 cut(s) 1022
BstSCI CCNGG 4 cut(s) 426, 427, 441, 442
BstSFI CTRYAG 3 cut(s) 24, 575, 852
BstV2I GAAGAC 1 cut(s) 1275
BstXI CCANNNNNNTGG 1 cut(s) 1141
BsuRI GGCC 1 cut(s) 494
BtgI CCRYGG 3 cut(s) 150, 189, 234
BtsCI GGATG 2 cut(s) 415, 652
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 583
CciI TCATGA 2 cut(s) 124, 1033
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 4 cut(s) 238, 609, 747, 1144
Cfr9I CCCGGG 2 cut(s) 427, 442
Csp6I GTAC 4 cut(s) 4, 15, 51, 595
CspCI CAANNNNNGTGG 4 cut(s) 100, 135, 586, 621
CviQI GTAC 4 cut(s) 4, 15, 51, 595
DdeI CTNAG 5 cut(s) 353, 543, 765, 966, 1061
DpnI GATC 5 cut(s) 45, 843, 1032, 1115, 1160
DpnII GATC 5 cut(s) 43, 841, 1030, 1113, 1158
Eam1104I CTCTTC 5 cut(s) 153, 385, 502, 718, 724
EarI CTCTTC 5 cut(s) 153, 385, 502, 718, 724
Ecl136II GAGCTC 3 cut(s) 163, 886, 1068
Eco130I CCWWGG 4 cut(s) 150, 189, 234, 702
Eco24I GRGCYC 3 cut(s) 165, 888, 1070
Eco31I GGTCTC 1 cut(s) 1062
Eco47I GGWCC 4 cut(s) 238, 609, 747, 1144
Eco53kI GAGCTC 3 cut(s) 163, 886, 1068
Eco88I CYCGRG 3 cut(s) 427, 442, 470
Eco91I GGTNACC 1 cut(s) 1022
EcoICRI GAGCTC 3 cut(s) 163, 886, 1068
EcoO65I GGTNACC 1 cut(s) 1022
EcoT14I CCWWGG 4 cut(s) 150, 189, 234, 702
EcoT38I GRGCYC 3 cut(s) 165, 888, 1070
ErhI CCWWGG 4 cut(s) 150, 189, 234, 702
Esp3I CGTCTC 1 cut(s) 981
FaqI GGGAC 4 cut(s) 317, 565, 760, 1242
FbaI TGATCA 1 cut(s) 1030
FokI GGATG 2 cut(s) 402, 659
FriOI GRGCYC 3 cut(s) 165, 888, 1070
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 770
GsaI CCCAGC 1 cut(s) 1227
GsuI CTGGAG 2 cut(s) 713, 1005
HaeII RGCGCY 1 cut(s) 772
HaeIII GGCC 1 cut(s) 494
HapII CCGG 3 cut(s) 428, 443, 1111
HhaI GCGC 1 cut(s) 771
Hin1I GRCGYC 1 cut(s) 1107
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 1184
HinfI GANTC 4 cut(s) 71, 475, 780, 1324
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 3 cut(s) 428, 443, 1111
HphI GGTGA 2 cut(s) 1034, 1123
Hpy166II GTNNAC 4 cut(s) 10, 271, 655, 1105
Hpy188I TCNGA 3 cut(s) 70, 213, 1062
Hpy188III TCNNGA 8 cut(s) 125, 612, 889, 1034, 1111, 1147, 1190, 1328
Hpy8I GTNNAC 4 cut(s) 10, 271, 655, 1105
HpyAV CCTTC 2 cut(s) 489, 1271
HpyCH4III ACNGT 3 cut(s) 14, 898, 1338
HpyCH4IV ACGT 2 cut(s) 6, 1107
HpyCH4V TGCA 7 cut(s) 26, 36, 322, 577, 1201, 1295, 1343
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 544, 553, 556, 583, 633, 913
HpyF3I CTNAG 5 cut(s) 353, 543, 765, 966, 1061
HpySE526I ACGT 2 cut(s) 6, 1107
Hsp92I GRCGYC 1 cut(s) 1107
HspAI GCGC 1 cut(s) 769
Kpn2I TCCGGA 1 cut(s) 1110
Ksp22I TGATCA 1 cut(s) 1030
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 5 cut(s) 43, 841, 1030, 1113, 1158
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 5 cut(s) 393, 568, 883, 948, 1065
LweI GCATC 2 cut(s) 853, 857
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 6, 1107
MaeIII GTNAC 3 cut(s) 1004, 1022, 1129
MalI GATC 5 cut(s) 45, 843, 1032, 1115, 1160
MboI GATC 5 cut(s) 43, 841, 1030, 1113, 1158
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 4 cut(s) 165, 390, 888, 1070
MluCI AATT 5 cut(s) 195, 329, 815, 1240, 1347
MlyI GAGTC 3 cut(s) 469, 789, 1318
MroI TCCGGA 1 cut(s) 1110
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 2 cut(s) 270, 405
MslI CAYNNNNRTG 3 cut(s) 1032, 1100, 1268
MspA1I CMGCKG 3 cut(s) 29, 535, 559
MspI CCGG 3 cut(s) 428, 443, 1111
MspR9I CCNGG 4 cut(s) 428, 429, 443, 444
MunI CAATTG 1 cut(s) 329
MwoI GCNNNNNNNGC 7 cut(s) 29, 544, 553, 556, 583, 633, 913
NciI CCSGG 4 cut(s) 428, 429, 443, 444
NcoI CCATGG 3 cut(s) 150, 189, 234
NdeII GATC 5 cut(s) 43, 841, 1030, 1113, 1158
NlaIV GGNNCC 4 cut(s) 232, 610, 748, 822
NmuCI GTSAC 2 cut(s) 1022, 1129
OliI CACNNNNGTG 1 cut(s) 1100
PagI TCATGA 2 cut(s) 124, 1033
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 300
PleI GAGTC 3 cut(s) 469, 788, 1318
PpsI GAGTC 3 cut(s) 469, 788, 1318
Ppu21I YACGTR 1 cut(s) 7
Psp124BI GAGCTC 3 cut(s) 165, 888, 1070
PspEI GGTNACC 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 1223
PspN4I GGNNCC 4 cut(s) 232, 610, 748, 822
PspPI GGNCC 4 cut(s) 238, 609, 747, 1144
PstI CTGCAG 2 cut(s) 28, 579
PstNI CAGNNNCTG 1 cut(s) 583
PvuII CAGCTG 2 cut(s) 29, 535
RsaI GTAC 4 cut(s) 5, 16, 52, 596
RsaNI GTAC 4 cut(s) 4, 15, 51, 595
RseI CAYNNNNRTG 3 cut(s) 1032, 1100, 1268
SacI GAGCTC 3 cut(s) 165, 888, 1070
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 270, 405
Sau3AI GATC 5 cut(s) 43, 841, 1030, 1113, 1158
Sau96I GGNCC 4 cut(s) 238, 609, 747, 1144
ScaI AGTACT 2 cut(s) 16, 52
SchI GAGTC 3 cut(s) 469, 789, 1318
ScrFI CCNGG 4 cut(s) 428, 429, 443, 444
SduI GDGCHC 4 cut(s) 165, 390, 888, 1070
SfaNI GCATC 2 cut(s) 853, 857
SfcI CTRYAG 3 cut(s) 24, 575, 852
SinI GGWCC 4 cut(s) 238, 609, 747, 1144
SmaI CCCGGG 2 cut(s) 429, 444
SmiMI CAYNNNNRTG 3 cut(s) 1032, 1100, 1268
SmlI CTYRAG 2 cut(s) 136, 887
SmoI CTYRAG 2 cut(s) 136, 887
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 5 cut(s) 195, 329, 815, 1240, 1347
SsiI CCGC 6 cut(s) 186, 488, 491, 548, 554, 557
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 3 cut(s) 165, 888, 1070
StyD4I CCNGG 4 cut(s) 426, 427, 441, 442
StyI CCWWGG 4 cut(s) 150, 189, 234, 702
TaaI ACNGT 3 cut(s) 14, 898, 1338
TaiI ACGT 2 cut(s) 9, 1110
TaqI TCGA 2 cut(s) 623, 844
TaqII GACCGA 1 cut(s) 490
TasI AATT 5 cut(s) 195, 329, 815, 1240, 1347
TatI WGTACW 2 cut(s) 14, 50
TauI GCSGC 6 cut(s) 188, 491, 494, 550, 556, 559
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 270, 405
Tru9I TTAA 2 cut(s) 270, 405
TseFI GTSAC 2 cut(s) 1022, 1129
Tsp45I GTSAC 2 cut(s) 1022, 1129
TspDTI ATGAA 9 cut(s) 141, 330, 725, 791, 1025, 1140, 1202, 1233, 1290
TspMI CCCGGG 2 cut(s) 427, 442
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 4 cut(s) 238, 609, 747, 1144
XapI RAATTY 1 cut(s) 1240
XmaI CCCGGG 2 cut(s) 427, 442
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 1 cut(s) 18
ZraI GACGTC 1 cut(s) 1108
ZrmI AGTACT 2 cut(s) 16, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.