Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

44646980 .. 44649233

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGACACTCTTCACCGGAATCACTCCTTTGTATGGTTCTAGCCTTGTATATGCAAGTCCTACAAGCCTTGTGTGGGGTTGGGTGGTAGCATCATTTTTCACCTGGTTTGTTGGACTTGCCATGGTAGGGATCTGCTCTTCTTTCCCGATTGCAAGAATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

54

Amino Acids

5.86

Weight (kDa)

7.95

Isoelectric Point (pI)

17.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
AjnI	CCWGG	1 cut(s)	101
AlwI	GGATC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	4, 91
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 73, 126
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	14, 142
BstDSI	CCRYGG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	2 cut(s)	42, 66
CviKI_1	RGCY	2 cut(s)	42, 66
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	14, 142
EarI	CTCTTC	2 cut(s)	14, 142
Eco130I	CCWWGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	33, 49, 51, 122, 161, 163
FatI	CATG	1 cut(s)	120
FspBI	CTAG	1 cut(s)	39
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	4, 91
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	53, 152
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	3 cut(s)	28, 88, 115
LweI	GCATC	1 cut(s)	98
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	91
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	1 cut(s)	104
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	120
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.