RchiOBHm_Chr1g0357891

Programmed cell death protein 7

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
50124926 .. 50127494
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1539 bp
ATGAGTGGCACAAATCAAGCATTTAGTTCCAGTTCTCGGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACACCTATAGATTCAATGCAAGAGTCACCTTCCGACCAGCTTCTAAAATCCAGAAAGAGGCTGAGTGGAAAGCCTGGTGAGCTGTTAAGGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAATGAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCATTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTAACCCTCCAATGATGCCTCCCAACGCTCCTATGGGGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTATTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCTTGAACCGTTTAGAGTGATCACGCACGAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAAAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGTTTGCAAAGGTGGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATATATATGGGCACCCTTATTGA

Protein Analysis

512

Amino Acids

57.55

Weight (kDa)

8.89

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 439, 1527
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 5 cut(s) 470, 549, 675, 833, 910
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 6 cut(s) 380, 574, 1181, 1303, 1477, 1490
AcuI CTGAAG 2 cut(s) 72, 590
AfaI GTAC 1 cut(s) 1197
AfiI CCNNNNNNNGG 4 cut(s) 36, 129, 436, 1171
AgsI TTSAA 5 cut(s) 87, 694, 782, 1136, 1190
AjnI CCWGG 2 cut(s) 145, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AloI GAACNNNNNNTCC 2 cut(s) 1416, 1448
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 3 cut(s) 539, 1060, 1079
AlwI GGATC 1 cut(s) 272
AoxI GGCC 5 cut(s) 455, 509, 717, 1153, 1363
ApaI GGGCCC 1 cut(s) 513
ApeKI GCWGC 7 cut(s) 284, 341, 743, 1202, 1238, 1253, 1512
ApoI RAATTY 6 cut(s) 380, 574, 1181, 1303, 1477, 1490
AseI ATTAAT 1 cut(s) 1323
AspLEI GCGC 2 cut(s) 905, 1122
AspS9I GGNCC 4 cut(s) 509, 510, 718, 1364
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 90, 161
BaeGI GKGCMC 2 cut(s) 513, 1530
BanI GGYRCC 2 cut(s) 439, 1527
BanII GRGCYC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BauI CACGAG 1 cut(s) 529
BbsI GAAGAC 3 cut(s) 60, 197, 1026
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 7 cut(s) 296, 328, 730, 1189, 1240, 1250, 1524
BccI CCATC 4 cut(s) 158, 638, 1009, 1133
BciT130I CCWGG 2 cut(s) 147, 817
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 3 cut(s) 562, 636, 795
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 3 cut(s) 539, 1060, 1079
BfaI CTAG 4 cut(s) 248, 981, 1070, 1257
BfmI CTRYAG 5 cut(s) 78, 282, 1203, 1401, 1436
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 9 cut(s) 285, 342, 470, 744, 834, 1203, 1239, 1254, 1513
BlpI GCTNAGC 1 cut(s) 1278
BlsI GCNGC 9 cut(s) 286, 343, 471, 745, 835, 1204, 1240, 1255, 1514
Bme1390I CCNGG 3 cut(s) 147, 201, 817
BmgT120I GGNCC 4 cut(s) 509, 510, 718, 1364
BmiI GGNNCC 6 cut(s) 245, 441, 510, 511, 512, 1529
BmrFI CCNGG 3 cut(s) 147, 201, 817
BmsI GCATC 7 cut(s) 477, 615, 652, 1231, 1240, 1252, 1456
BpiI GAAGAC 3 cut(s) 60, 197, 1026
BplI GAGNNNNNCTC 2 cut(s) 1106, 1138
Bpu1102I GCTNAGC 1 cut(s) 1278
BpuEI CTTGAG 3 cut(s) 43, 641, 1103
BpuMI CCSGG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 199, 452, 815, 816
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 129, 436, 1171
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 3 cut(s) 612, 905, 1266
Bse8I GATNNNNATC 1 cut(s) 635
BseBI CCWGG 2 cut(s) 147, 817
BseDI CCNNGG 4 cut(s) 199, 452, 815, 816
BseGI GGATG 4 cut(s) 169, 1180, 1255, 1267
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 4 cut(s) 36, 129, 436, 1171
BseMI GCAATG 3 cut(s) 612, 905, 1266
BseMII CTCAG 4 cut(s) 125, 302, 675, 1269
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 3 cut(s) 1226, 1229, 1232
BseSI GKGCMC 2 cut(s) 513, 1530
BseXI GCAGC 7 cut(s) 296, 328, 730, 1189, 1240, 1250, 1524
BshFI GGCC 5 cut(s) 457, 511, 719, 1155, 1365
BshNI GGYRCC 2 cut(s) 439, 1527
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 2 cut(s) 201, 524
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 4 cut(s) 36, 129, 436, 1171
BsmAI GTCTC 3 cut(s) 539, 1060, 1079
BsmFI GGGAC 1 cut(s) 798
BsnI GGCC 5 cut(s) 457, 511, 719, 1155, 1365
Bso31I GGTCTC 1 cut(s) 539
Bsp120I GGGCCC 1 cut(s) 509
Bsp1286I GDGCHC 3 cut(s) 513, 536, 1530
Bsp143I GATC 6 cut(s) 277, 332, 562, 636, 795, 955
Bsp1720I GCTNAGC 1 cut(s) 1278
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 5 cut(s) 470, 549, 675, 833, 910
BspANI GGCC 5 cut(s) 457, 511, 719, 1155, 1365
BspCNI CTCAG 4 cut(s) 126, 301, 676, 1270
BspLI GGNNCC 6 cut(s) 245, 441, 510, 511, 512, 1529
BspMAI CTGCAG 3 cut(s) 286, 1207, 1405
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 439, 1527
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 3 cut(s) 612, 905, 1266
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 4 cut(s) 199, 452, 815, 816
BssMI GATC 6 cut(s) 277, 332, 562, 636, 795, 955
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 147, 817
Bst4CI ACNGT 5 cut(s) 401, 786, 881, 1090, 1454
Bst6I CTCTTC 2 cut(s) 1050, 1164
BstAPI GCANNNNNTGC 1 cut(s) 1117
BstC8I GCNNGC 1 cut(s) 1039
BstDEI CTNAG 4 cut(s) 134, 288, 684, 1278
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 4 cut(s) 169, 1180, 1255, 1267
BstHHI GCGC 2 cut(s) 905, 1122
BstKTI GATC 6 cut(s) 280, 335, 565, 639, 798, 958
BstMAI GTCTC 3 cut(s) 539, 1060, 1079
BstMBI GATC 6 cut(s) 277, 332, 562, 636, 795, 955
BstMWI GCNNNNNNNGC 9 cut(s) 151, 185, 565, 616, 625, 1117, 1235, 1262, 1466
BstNI CCWGG 2 cut(s) 147, 817
BstSCI CCNGG 3 cut(s) 145, 199, 815
BstSFI CTRYAG 5 cut(s) 78, 282, 1203, 1401, 1436
BstSLI GKGCMC 2 cut(s) 513, 1530
BstV1I GCAGC 7 cut(s) 296, 328, 730, 1189, 1240, 1250, 1524
BstV2I GAAGAC 3 cut(s) 60, 197, 1026
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 5 cut(s) 457, 511, 719, 1155, 1365
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 4 cut(s) 169, 1180, 1255, 1267
BtsI GCAGTG 1 cut(s) 1339
BtsIMutI CAGTG 3 cut(s) 741, 1339, 1459
Cac8I GCNNGC 1 cut(s) 1039
CfoI GCGC 2 cut(s) 905, 1122
Cfr13I GGNCC 4 cut(s) 509, 510, 718, 1364
Csp6I GTAC 1 cut(s) 1196
CviAII CATG 7 cut(s) 209, 256, 412, 453, 1024, 1246, 1508
CviQI GTAC 1 cut(s) 1196
DdeI CTNAG 4 cut(s) 134, 288, 684, 1278
DpnI GATC 6 cut(s) 279, 334, 564, 638, 797, 957
DpnII GATC 6 cut(s) 277, 332, 562, 636, 795, 955
Eam1104I CTCTTC 2 cut(s) 1050, 1164
EarI CTCTTC 2 cut(s) 1050, 1164
Eco130I CCWWGG 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 72, 590
EcoO109I RGGNCCY 2 cut(s) 509, 510
EcoRII CCWGG 2 cut(s) 145, 815
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 7 cut(s) 212, 259, 415, 456, 1027, 1249, 1511
FaqI GGGAC 1 cut(s) 798
FatI CATG 7 cut(s) 208, 255, 411, 452, 1023, 1245, 1507
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 3 cut(s) 562, 636, 795
Fnu4HI GCNGC 9 cut(s) 285, 342, 470, 744, 834, 1203, 1239, 1254, 1513
FokI GGATG 4 cut(s) 176, 1187, 1262, 1274
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 9 cut(s) 285, 342, 470, 744, 834, 1203, 1239, 1254, 1513
FspBI CTAG 4 cut(s) 248, 981, 1070, 1257
GlaI GCGC 2 cut(s) 904, 1121
GluI GCNGC 9 cut(s) 285, 342, 470, 744, 834, 1203, 1239, 1254, 1513
HaeIII GGCC 5 cut(s) 457, 511, 719, 1155, 1365
HapII CCGG 2 cut(s) 201, 524
HhaI GCGC 2 cut(s) 905, 1122
Hin1II CATG 7 cut(s) 212, 259, 415, 456, 1027, 1249, 1511
Hin6I GCGC 2 cut(s) 903, 1120
HinP1I GCGC 2 cut(s) 903, 1120
HinfI GANTC 7 cut(s) 56, 83, 95, 415, 1073, 1316, 1418
HpaII CCGG 2 cut(s) 201, 524
HphI GGTGA 2 cut(s) 90, 161
Hpy188I TCNGA 7 cut(s) 106, 308, 641, 658, 685, 1078, 1310
Hpy188III TCNNGA 7 cut(s) 60, 123, 529, 959, 1129, 1187, 1422
HpyAV CCTTC 3 cut(s) 111, 932, 1382
HpyCH4III ACNGT 5 cut(s) 401, 786, 881, 1090, 1454
HpyCH4IV ACGT 1 cut(s) 934
HpyF10VI GCNNNNNNNGC 9 cut(s) 151, 185, 565, 616, 625, 1117, 1235, 1262, 1466
HpyF3I CTNAG 4 cut(s) 134, 288, 684, 1278
HpySE526I ACGT 1 cut(s) 934
Hsp92II CATG 7 cut(s) 212, 259, 415, 456, 1027, 1249, 1511
HspAI GCGC 2 cut(s) 903, 1120
Ksp22I TGATCA 3 cut(s) 562, 636, 795
Kzo9I GATC 6 cut(s) 277, 332, 562, 636, 795, 955
LmnI GCTCC 4 cut(s) 505, 1127, 1219, 1457
Lsp1109I GCAGC 7 cut(s) 296, 328, 730, 1189, 1240, 1250, 1524
LweI GCATC 7 cut(s) 477, 615, 652, 1231, 1240, 1252, 1456
MaeI CTAG 4 cut(s) 248, 981, 1070, 1257
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 4 cut(s) 96, 526, 1405, 1448
MalI GATC 6 cut(s) 279, 334, 564, 638, 797, 957
MboI GATC 6 cut(s) 277, 332, 562, 636, 795, 955
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 3 cut(s) 513, 536, 1530
MlyI GAGTC 3 cut(s) 50, 104, 1310
MmeI TCCRAC 1 cut(s) 129
MseI TTAA 5 cut(s) 158, 228, 755, 1044, 1323
MslI CAYNNNNRTG 1 cut(s) 451
MspA1I CMGCKG 3 cut(s) 568, 675, 1241
MspI CCGG 2 cut(s) 201, 524
MspR9I CCNGG 3 cut(s) 147, 201, 817
MvaI CCWGG 2 cut(s) 147, 817
MwoI GCNNNNNNNGC 9 cut(s) 151, 185, 565, 616, 625, 1117, 1235, 1262, 1466
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 452
NdeII GATC 6 cut(s) 277, 332, 562, 636, 795, 955
NlaIII CATG 7 cut(s) 212, 259, 415, 456, 1027, 1249, 1511
NlaIV GGNNCC 6 cut(s) 245, 441, 510, 511, 512, 1529
NmuCI GTSAC 3 cut(s) 96, 526, 1405
PasI CCCWGGG 1 cut(s) 816
PfeI GAWTC 4 cut(s) 83, 415, 1073, 1418
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 9 cut(s) 286, 343, 471, 745, 835, 1204, 1240, 1255, 1514
PleI GAGTC 3 cut(s) 50, 103, 1310
PpsI GAGTC 3 cut(s) 50, 103, 1310
PshBI ATTAAT 1 cut(s) 1323
Psp6I CCWGG 2 cut(s) 145, 815
PspGI CCWGG 2 cut(s) 145, 815
PspN4I GGNNCC 6 cut(s) 245, 441, 510, 511, 512, 1529
PspOMI GGGCCC 1 cut(s) 509
PspPI GGNCC 4 cut(s) 509, 510, 718, 1364
PstI CTGCAG 3 cut(s) 286, 1207, 1405
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 2 cut(s) 568, 1241
RsaI GTAC 1 cut(s) 1197
RsaNI GTAC 1 cut(s) 1196
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 5 cut(s) 158, 228, 755, 1044, 1323
SatI GCNGC 9 cut(s) 285, 342, 470, 744, 834, 1203, 1239, 1254, 1513
Sau3AI GATC 6 cut(s) 277, 332, 562, 636, 795, 955
Sau96I GGNCC 4 cut(s) 509, 510, 718, 1364
SchI GAGTC 3 cut(s) 50, 104, 1310
ScrFI CCNGG 3 cut(s) 147, 201, 817
SduI GDGCHC 3 cut(s) 513, 536, 1530
SfaNI GCATC 7 cut(s) 477, 615, 652, 1231, 1240, 1252, 1456
SfcI CTRYAG 5 cut(s) 78, 282, 1203, 1401, 1436
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 3 cut(s) 58, 620, 1082
SmoI CTYRAG 3 cut(s) 58, 620, 1082
SsiI CCGC 5 cut(s) 470, 549, 675, 833, 910
SspMI CTAG 4 cut(s) 248, 981, 1070, 1257
StyD4I CCNGG 3 cut(s) 145, 199, 815
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 5 cut(s) 401, 786, 881, 1090, 1454
TaiI ACGT 1 cut(s) 937
TaqI TCGA 3 cut(s) 460, 958, 1286
TauI GCSGC 2 cut(s) 472, 836
TfiI GAWTC 4 cut(s) 83, 415, 1073, 1418
Tru1I TTAA 5 cut(s) 158, 228, 755, 1044, 1323
Tru9I TTAA 5 cut(s) 158, 228, 755, 1044, 1323
TscAI CASTG 3 cut(s) 741, 1339, 1459
TseFI GTSAC 3 cut(s) 96, 526, 1405
TseI GCWGC 7 cut(s) 284, 341, 743, 1202, 1238, 1253, 1512
Tsp45I GTSAC 3 cut(s) 96, 526, 1405
TspDTI ATGAA 8 cut(s) 197, 284, 428, 963, 984, 1040, 1157, 1401
TspRI CASTG 3 cut(s) 741, 1339, 1459
Van91I CCANNNNNTGG 1 cut(s) 436
VspI ATTAAT 1 cut(s) 1323
XapI RAATTY 6 cut(s) 380, 574, 1181, 1303, 1477, 1490
XcmI CCANNNNNNNNNTGG 2 cut(s) 502, 1012
XspI CTAG 4 cut(s) 248, 981, 1070, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.