RchiOBHm_Chr1g0373451
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003200
Physical Location & Seq
Forward (+)
61681656 .. 61682076
421 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGCTTGGGTTCCAGTTGGAGCAGACATGAATACGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATGTATGCAATCTGCAATGAAGTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

74

Amino Acids

8.56

Weight (kDa)

6.04

Isoelectric Point (pI)

17.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AciI CCGC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 77
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 77
BbvI GCAGC 1 cut(s) 169
BcgI CGANNNNNNTGC 1 cut(s) 199
BciVI GTATCC 1 cut(s) 54
BfuI GTATCC 1 cut(s) 54
BisI GCNGC 2 cut(s) 121, 158
BlsI GCNGC 2 cut(s) 122, 159
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 14, 154
Bse3DI GCAATG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 14, 154
BseXI GCAGC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 2 cut(s) 14, 154
BssMI GATC 1 cut(s) 82
BssNAI GTATAC 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 102
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 169
BstZ17I GTATAC 1 cut(s) 102
BsuI GTATCC 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 147
CviAII CATG 3 cut(s) 28, 107, 196
CviJI RGCY 2 cut(s) 5, 115
CviKI_1 RGCY 2 cut(s) 5, 115
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 181
FaeI CATG 3 cut(s) 31, 110, 199
FaiI YATR 6 cut(s) 29, 40, 102, 108, 197, 201
FatI CATG 3 cut(s) 27, 106, 195
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 121, 158
Fsp4HI GCNGC 2 cut(s) 121, 158
GluI GCNGC 2 cut(s) 121, 158
Hin1II CATG 3 cut(s) 31, 110, 199
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 129, 203, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 31, 110, 199
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 27, 78, 135
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 138
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 35
MluCI AATT 2 cut(s) 77, 184
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 134, 169
MseI TTAA 2 cut(s) 51, 75
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 1 cut(s) 82
NlaIII CATG 3 cut(s) 31, 110, 199
NlaIV GGNNCC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 122, 159
PspN4I GGNNCC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 51, 75
SatI GCNGC 2 cut(s) 121, 158
Sau3AI GATC 1 cut(s) 82
SetI ASST 2 cut(s) 117, 145
SfaNI GCATC 1 cut(s) 138
Sse9I AATT 2 cut(s) 77, 184
SsiI CCGC 1 cut(s) 121
TasI AATT 2 cut(s) 77, 184
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 51, 75
Tru9I TTAA 2 cut(s) 51, 75
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 35, 44, 84, 184
TspRI CASTG 1 cut(s) 154
XapI RAATTY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.