Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Forward (+)

63749529 .. 63752025

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGATCTCCACCAACCAAAGTCCAAGACGATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGAGATGGGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAAATATATCCGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATAAGCCCAAGTTCATCAAACGCAAAGCCAACAAACCCAAAGCTAAAGCTCGTGATCATGGTTTTCCGGAATTTCAATCACCAAAATATCTTCCCCAGCTGATGGAGATCGAGGGTAAACTGTACGCTCTCGAATTAAAGCTTGAAGAAGACTTCCCCAGCTCCTCGTCCTTTGAGGTATTTGACCCCCAAACCGGATCATGGGCCGCTCTTCCGGATCATCCGATTATCGAATGTGGTGGTCTCCTCTCCTGCGCAGTTGTGGGCACCAAGTTCTTGATCTCTGCTCGGGATACTCCGGCCTACTGCTTTGACGTGGCGGAGCCTACCCGACCATGGAATGAACTTCGTCTTCGTCATGACGGCCATAAACTGTACGATTATAATTACCCCAATTCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGATAATCATAAGATATTATTTTCCTCCCGTGGGAACGATATACGAGTCTTCCACATGAACCTGTCCAATGATCTCGCTCTCGAGCTTATAGCAACCGTACAGGTGGATATTAAATTTGATGAGTCCTCGGTCAGTTTCACCCATCTTGGAGGTCAAAAAGTATGCTTTGTGTTCTTGGATTGGTGGATTTTTGATAAGATGCGTGGGGTTTTCTTCACATTCGAATATTCCTTTTCGAAATCTGCTGCTAGTCCTGACACTCATACCAGCAGTTGTGGTGATGATCCATATTTCCGTGTGTCTTACCCCTCCAACTCGAATGGTAGATCCTTTTCTGCCAAAACACTGGGTTGGCGCACCTTTGAATACCACTACTGGTCTGAGGAAGCTTCTCCCATATCTACAGAAGTGTGCGGTTTAGCTGTGCTTCCACTCCATCACCGTCACAGTGAGGAGCAGCAGCAGGAACCCTTCCGCTGCAAAAGTTGCCAGTTCTGCTTTAGCAATAAAAAAAATTTGAATTCTCACTTATCTATCAGTGAGTGTTGCAGATCTGAGCAACGACTCGTCCAGTGCAAATTCTGCGGATGCAACTTTTTCCATCAAGAATTGTATGCTCACTTCAGTAGCAGTGTGAGTTGCAGATCCAATTTTACAGGTGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

48.93

Weight (kDa)

5.85

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1668	PF07893	82 - 176	2e-08	Protein of unknown function (DUF1668)
Kelch_FKB95	PF25210	84 - 172	9e-06	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc16I	TGCGCA	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	162
AccIII	TCCGGA	2 cut(s)	250, 397
AciI	CCGC	6 cut(s)	123, 390, 503, 1035, 1096, 1206
AclWI	GGATC	7 cut(s)	13, 109, 388, 408, 899, 942, 1260
AcoI	YGGCCR	2 cut(s)	117, 547
AcsI	RAATTY	5 cut(s)	254, 734, 1135, 1141, 1199
AcuI	CTGAAG	1 cut(s)	1228
AfaI	GTAC	3 cut(s)	308, 560, 720
AfiI	CCNNNNNNNGG	5 cut(s)	286, 377, 384, 519, 651
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	59, 131, 260, 329, 986, 1141
AjiI	CACGTC	1 cut(s)	499
AluBI	AGCT	8 cut(s)	227, 233, 283, 325, 345, 706, 1010, 1043
AluI	AGCT	8 cut(s)	227, 233, 283, 325, 345, 706, 1010, 1043
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	7 cut(s)	13, 109, 388, 408, 899, 942, 1260
Ama87I	CYCGRG	2 cut(s)	471, 701
Aor13HI	TCCGGA	2 cut(s)	250, 397
AoxI	GGCC	4 cut(s)	117, 387, 483, 547
ApeKI	GCWGC	4 cut(s)	866, 1078, 1081, 1098
ApoI	RAATTY	5 cut(s)	254, 734, 1135, 1141, 1199
AspLEI	GCGC	2 cut(s)	440, 978
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	4 cut(s)	255, 751, 911, 1052
AsuII	TTCGAA	2 cut(s)	843, 857
AvaI	CYCGRG	2 cut(s)	471, 701
BaeGI	GKGCMC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	1226, 1258
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	3 cut(s)	339, 527, 661
BbvI	GCAGC	4 cut(s)	853, 1085, 1090, 1093
BccI	CCATC	5 cut(s)	76, 280, 771, 1065, 1230
BceAI	ACGGC	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	2 cut(s)	593, 1023
BfuAI	ACCTGC	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	1172
BisI	GCNGC	5 cut(s)	390, 867, 1079, 1082, 1099
BlsI	GCNGC	5 cut(s)	391, 868, 1080, 1083, 1100
BmeT110I	CYCGRG	2 cut(s)	471, 701
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	451, 507, 1089
BmrI	ACTGGG	1 cut(s)	977
BmsI	GCATC	2 cut(s)	810, 1199
BmuI	ACTGGG	1 cut(s)	977
BpiI	GAAGAC	3 cut(s)	339, 527, 661
Bpu14I	TTCGAA	2 cut(s)	843, 857
BsaAI	YACGTR	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	156, 518, 649, 747
BsaWI	WCCGGW	3 cut(s)	250, 377, 397
Bsc4I	CCNNNNNNNGG	5 cut(s)	286, 377, 384, 519, 651
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	4 cut(s)	972, 1001, 1111, 1192
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	2 cut(s)	250, 397
BseDI	CCNNGG	4 cut(s)	156, 518, 649, 747
BseGI	GGATG	2 cut(s)	403, 1214
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	5 cut(s)	286, 377, 384, 519, 651
BseMII	CTCAG	3 cut(s)	119, 993, 1167
BseNI	ACTGG	4 cut(s)	972, 1001, 1111, 1192
BseRI	GAGGAG	4 cut(s)	337, 419, 632, 1088
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	853, 1085, 1090, 1093
BseYI	CCCAGC	2 cut(s)	279, 341
BshFI	GGCC	4 cut(s)	119, 389, 485, 549
BshNI	GGYRCC	1 cut(s)	449
BsiHKCI	CYCGRG	2 cut(s)	471, 701
BsiSI	CCGG	5 cut(s)	120, 251, 378, 398, 482
BslI	CCNNNNNNNGG	5 cut(s)	286, 377, 384, 519, 651
BsmAI	GTCTC	1 cut(s)	431
BsnI	GGCC	4 cut(s)	119, 389, 485, 549
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	2 cut(s)	471, 701
Bsp119I	TTCGAA	2 cut(s)	843, 857
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp13I	TCCGGA	2 cut(s)	250, 397
Bsp19I	CCATGG	1 cut(s)	518
BspACI	CCGC	6 cut(s)	123, 390, 503, 1035, 1096, 1206
BspANI	GGCC	4 cut(s)	119, 389, 485, 549
BspCNI	CTCAG	3 cut(s)	118, 994, 1168
BspEI	TCCGGA	2 cut(s)	250, 397
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	451, 507, 1089
BspMAI	CTGCAG	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	7 cut(s)	13, 109, 388, 408, 899, 942, 1260
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	2 cut(s)	843, 857
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	4 cut(s)	972, 1001, 1111, 1192
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	4 cut(s)	156, 518, 649, 747
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	156, 518
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	5 cut(s)	306, 558, 718, 1064, 1070
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	2 cut(s)	1107, 1203
BstBAI	YACGTR	1 cut(s)	166
BstBI	TTCGAA	2 cut(s)	843, 857
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	105, 1002, 1176
BstDSI	CCRYGG	2 cut(s)	518, 649
BstF5I	GGATG	2 cut(s)	403, 1214
BstHHI	GCGC	2 cut(s)	440, 978
BstMAI	GTCTC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 1107, 1116, 1203
BstSFI	CTRYAG	2 cut(s)	593, 1023
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	4 cut(s)	853, 1085, 1090, 1093
BstV2I	GAAGAC	3 cut(s)	339, 527, 661
BstX2I	RGATCY	5 cut(s)	5, 101, 947, 1172, 1265
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	5 cut(s)	5, 101, 947, 1172, 1265
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	4 cut(s)	119, 389, 485, 549
BtgI	CCRYGG	2 cut(s)	518, 649
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	403, 1214
BtsI	GCAGTG	1 cut(s)	1258
BtsIMutI	CAGTG	5 cut(s)	965, 1075, 1165, 1199, 1258
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	440, 978
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	307, 559, 719
CviAII	CATG	5 cut(s)	242, 384, 519, 542, 676
CviQI	GTAC	3 cut(s)	307, 559, 719
DdeI	CTNAG	3 cut(s)	105, 1002, 1176
EaeI	YGGCCR	2 cut(s)	117, 547
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	2 cut(s)	138, 518
Eco130I	CCWWGG	2 cut(s)	156, 518
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	1228
Eco88I	CYCGRG	2 cut(s)	471, 701
EcoRI	GAATTC	1 cut(s)	1141
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	156, 518
ErhI	CCWWGG	2 cut(s)	156, 518
FaeI	CATG	5 cut(s)	245, 387, 522, 545, 679
FatI	CATG	5 cut(s)	241, 383, 518, 541, 675
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	390, 867, 1079, 1082, 1099
FokI	GGATG	2 cut(s)	390, 1221
Fsp4HI	GCNGC	5 cut(s)	390, 867, 1079, 1082, 1099
FspBI	CTAG	1 cut(s)	870
FspI	TGCGCA	1 cut(s)	439
GlaI	GCGC	2 cut(s)	439, 977
GluI	GCNGC	5 cut(s)	390, 867, 1079, 1082, 1099
GsaI	CCCAGC	2 cut(s)	283, 345
HaeIII	GGCC	4 cut(s)	119, 389, 485, 549
HapII	CCGG	5 cut(s)	120, 251, 378, 398, 482
HhaI	GCGC	2 cut(s)	440, 978
Hin1II	CATG	5 cut(s)	245, 387, 522, 545, 679
Hin6I	GCGC	2 cut(s)	438, 976
HinP1I	GCGC	2 cut(s)	438, 976
HindIII	AAGCTT	2 cut(s)	323, 1008
HinfI	GANTC	3 cut(s)	666, 743, 1185
HpaII	CCGG	5 cut(s)	120, 251, 378, 398, 482
HphI	GGTGA	4 cut(s)	255, 751, 911, 1052
Hpy166II	GTNNAC	2 cut(s)	163, 302
Hpy188I	TCNGA	5 cut(s)	108, 150, 408, 1003, 1177
Hpy8I	GTNNAC	2 cut(s)	163, 302
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	593, 1102
HpyCH4III	ACNGT	5 cut(s)	306, 558, 718, 1064, 1070
HpyCH4IV	ACGT	3 cut(s)	69, 165, 498
HpyCH4V	TGCA	6 cut(s)	595, 1101, 1170, 1197, 1212, 1263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 1107, 1116, 1203
HpyF3I	CTNAG	3 cut(s)	105, 1002, 1176
HpySE526I	ACGT	3 cut(s)	69, 165, 498
Hsp92II	CATG	5 cut(s)	245, 387, 522, 545, 679
HspAI	GCGC	2 cut(s)	438, 976
Kpn2I	TCCGGA	2 cut(s)	250, 397
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	350, 505, 1075
Lsp1109I	GCAGC	4 cut(s)	853, 1085, 1090, 1093
LweI	GCATC	2 cut(s)	810, 1199
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	3 cut(s)	69, 165, 498
MaeIII	GTNAC	1 cut(s)	1064
MbiI	CCGCTC	1 cut(s)	392
MboII	GAAGA	8 cut(s)	47, 266, 341, 344, 386, 527, 661, 826
MflI	RGATCY	5 cut(s)	5, 101, 947, 1172, 1265
MhlI	GDGCHC	1 cut(s)	452
MlyI	GAGTC	3 cut(s)	675, 752, 1179
MmeI	TCCRAC	3 cut(s)	150, 173, 957
MroI	TCCGGA	2 cut(s)	250, 397
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	2 cut(s)	320, 732
MspA1I	CMGCKG	2 cut(s)	283, 1098
MspI	CCGG	5 cut(s)	120, 251, 378, 398, 482
MwoI	GCNNNNNNNGC	4 cut(s)	187, 1107, 1116, 1203
NaeI	GCCGGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	518
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	5 cut(s)	245, 387, 522, 545, 679
NlaIV	GGNNCC	3 cut(s)	451, 507, 1089
NmuCI	GTSAC	1 cut(s)	1064
NsbI	TGCGCA	1 cut(s)	439
NspV	TTCGAA	2 cut(s)	843, 857
PaeR7I	CTCGAG	1 cut(s)	701
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	391, 868, 1080, 1083, 1100
PleI	GAGTC	3 cut(s)	674, 751, 1179
PpsI	GAGTC	3 cut(s)	674, 751, 1179
Ppu21I	YACGTR	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	567
PspFI	CCCAGC	2 cut(s)	279, 341
PspN4I	GGNNCC	3 cut(s)	451, 507, 1089
PspPI	GGNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	597
PsuI	RGATCY	5 cut(s)	5, 101, 947, 1172, 1265
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	3 cut(s)	308, 560, 720
RsaNI	GTAC	3 cut(s)	307, 559, 719
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	320, 732
SatI	GCNGC	5 cut(s)	390, 867, 1079, 1082, 1099
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	3 cut(s)	675, 752, 1179
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	2 cut(s)	810, 1199
SfcI	CTRYAG	2 cut(s)	593, 1023
Sfr274I	CTCGAG	1 cut(s)	701
SfuI	TTCGAA	2 cut(s)	843, 857
SlaI	CTCGAG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SsiI	CCGC	6 cut(s)	123, 390, 503, 1035, 1096, 1206
SspI	AATATT	1 cut(s)	848
SspMI	CTAG	1 cut(s)	870
StyI	CCWWGG	2 cut(s)	156, 518
TaaI	ACNGT	5 cut(s)	306, 558, 718, 1064, 1070
TaiI	ACGT	3 cut(s)	72, 168, 501
TaqI	TCGA	7 cut(s)	294, 315, 414, 702, 843, 857, 938
TaqII	GACCGA	1 cut(s)	739
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	320, 732
Tru9I	TTAA	2 cut(s)	320, 732
TscAI	CASTG	5 cut(s)	972, 1075, 1165, 1199, 1258
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	4 cut(s)	866, 1078, 1081, 1098
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	3 cut(s)	187, 540, 692
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	5 cut(s)	972, 1075, 1165, 1199, 1258
Van91I	CCANNNNNTGG	1 cut(s)	286
XapI	RAATTY	5 cut(s)	254, 734, 1135, 1141, 1199
XhoI	CTCGAG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.