Rh1AG409900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005924
Physical Location & Seq
Reverse (-)
64040432 .. 64042933
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG409900.1

Sequence Viewer

Length: 1503 bp
ATGGGGCGAAAGTCGAAGTCGAGATTTAGGGAGGCTGTTCATCTGGATCAGGGCGACATGGAAGCCAAGGAGTCGCTGTACATATGTAGCATGGAGAGATATAAGGACGAGAGCGTGCTTACACAGTGTTACAGTGTCCAGGCCATCAACTTGACCGACTTGCTCTCCTTTTCCGATACTCCGATTACCATCTCTTTCTCCAGATCTCCACCAACCAAAGCTATGGGATCTCCACCAACCAAAGTCCAAGACCATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGAGATGGGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAAATACATCCGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATAAGCCCAAGTTCATCAAACGCAAAGCCAACAAACCTAAAGCTAAAGCTCGTGATCATGGTTTTCCGGAATTTCAATCACCAAAATATCTTCCCCAGCTGATGGAGATCGAGGGTAAACTGTACGCTGTCGAATTAAAGCCTGAAGAAGACTTCCCCAGCTCCTCGTCCTTTGAGGTATTTGACCCCCAAACCGGATCATGGGCCGCTCTTCCGGATCATCCTCCCCCGATTATCGAATGTGGTGGTCTCCTCTCCTGCGCAGTTGTGGGCACCAAGTTCTTGATCTCTGCTGGGGATACTCCGACCTACTGCTTTGACGTGGCGGAGCCTACCCGACCATGGAATGAACTTCGTCTTCGTAATGACGGCCCTAAACTGTACGATTATAATGACCCCAATTCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGATAATCATAAGATATTATTTTCCTCCTCTGGGAACGATATACTAGTTTTCCACATGAACCTGTCCGATGATCTGGCTCTCGAGCTTATAGCAACCATACAGGTGGATATTAAATTTGATGAGTCCTCGGTCAGTTTCACCCATCTTGGAGGTCAAAAAGTATGCTTTTTGTTCTTGGATTGGTGGATTTTTGATAAGATGCGTGGGGTTTTCTTCACATTCGAATATTCCTTTTCGAAATCTGCTGCTAGTCCTGACACTCATACCAGCAGTTGTGGTGATGATCCATATTTCCGTGTGTTTTACCCCTCCAACGCGAATGGTAGATCCTTTTCTGCCAAAACACTGGGTTGGCGCACCTTTGAATACCACTACTGGTCTGAGGAAGCTTCTCCCATATCTACAGTTGTGTGCGGTTTAGCTGTGCTTCCACTCCATCACCGGCATCGTGAGGGGCGTATCTGCAAAAGCTGCCAATGCTACTTTCCCGATATAGAACTCTTCAATCTTCACTTATCTGTCAATCCTTGTTGCAGATCTGAGCAGCAACTCATCCAGTGCAAATTCTGCAGATGCTACTTTTCCAAGCAAGAATTGTTTGCTCACTTCAGTACCAGTGCGAGTTGTAAATCAAAATTTACAGGTAACATCTGA

Protein Analysis

500

Amino Acids

56.64

Weight (kDa)

5.86

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 157 - 251 8.5e-11 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
Acc16I TGCGCA 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 814
AccB1I GGYRCC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 384
AccII CGCG 1 cut(s) 1166
AccIII TCCGGA 2 cut(s) 472, 619
AciI CCGC 4 cut(s) 345, 612, 731, 1263
AclWI GGATC 7 cut(s) 54, 235, 331, 610, 630, 1127, 1170
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 4 cut(s) 476, 962, 1412, 1484
AcuI CTGAAG 2 cut(s) 570, 1441
AfaI GTAC 4 cut(s) 80, 530, 788, 1462
AfiI CCNNNNNNNGG 5 cut(s) 508, 599, 606, 747, 879
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 5 cut(s) 281, 353, 482, 1214, 1354
AhlI ACTAGT 1 cut(s) 892
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 1317, 1349
AluBI AGCT 9 cut(s) 221, 449, 455, 505, 567, 934, 1238, 1271, 1320
AluI AGCT 9 cut(s) 221, 449, 455, 505, 567, 934, 1238, 1271, 1320
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 7 cut(s) 54, 235, 331, 610, 630, 1127, 1170
Ama87I CYCGRG 1 cut(s) 929
Aor13HI TCCGGA 2 cut(s) 472, 619
AoxI GGCC 4 cut(s) 141, 339, 609, 775
ApeKI GCWGC 3 cut(s) 1094, 1320, 1393
ApoI RAATTY 4 cut(s) 476, 962, 1412, 1484
AspLEI GCGC 2 cut(s) 668, 1206
AspS9I GGNCC 2 cut(s) 609, 776
AsuHPI GGTGA 4 cut(s) 477, 979, 1139, 1280
AsuII TTCGAA 2 cut(s) 1071, 1085
AvaI CYCGRG 1 cut(s) 929
BaeGI GKGCMC 1 cut(s) 680
BaeI ACNNNNGTAYC 2 cut(s) 1444, 1477
BanI GGYRCC 1 cut(s) 677
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 561, 755
BbvI GCAGC 3 cut(s) 1081, 1307, 1405
BccI CCATC 6 cut(s) 152, 197, 298, 502, 999, 1293
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 697
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 659
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 2 cut(s) 893, 1098
BfmI CTRYAG 3 cut(s) 821, 1251, 1417
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 2 cut(s) 203, 1385
BisI GCNGC 4 cut(s) 612, 1095, 1321, 1394
BlsI GCNGC 4 cut(s) 613, 1096, 1322, 1395
Bme1390I CCNGG 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 929
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 609, 776
BmiI GGNNCC 2 cut(s) 679, 735
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 1205
BmsI GCATC 3 cut(s) 1038, 1303, 1412
BmuI ACTGGG 1 cut(s) 1205
BpiI GAAGAC 2 cut(s) 561, 755
BpmI CTGGAG 1 cut(s) 184
Bpu14I TTCGAA 2 cut(s) 1071, 1085
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 188, 512
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 66, 378, 746, 975
BsaWI WCCGGW 3 cut(s) 472, 599, 619
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 149, 179
Bsc4I CCNNNNNNNGG 5 cut(s) 508, 599, 606, 747, 879
Bse118I RCCGGY 2 cut(s) 341, 1290
Bse1I ACTGG 4 cut(s) 1200, 1229, 1405, 1464
Bse8I GATNNNNATC 2 cut(s) 188, 512
BseAI TCCGGA 2 cut(s) 472, 619
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 66, 378, 746, 975
BseGI GGATG 3 cut(s) 367, 625, 1401
BseJI GATNNNNATC 2 cut(s) 188, 512
BseLI CCNNNNNNNGG 5 cut(s) 508, 599, 606, 747, 879
BseMII CTCAG 3 cut(s) 341, 1221, 1380
BseNI ACTGG 4 cut(s) 1200, 1229, 1405, 1464
BseRI GAGGAG 4 cut(s) 559, 647, 860, 865
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 3 cut(s) 1081, 1307, 1405
BseYI CCCAGC 3 cut(s) 501, 563, 698
Bsh1236I CGCG 1 cut(s) 1166
BshFI GGCC 4 cut(s) 143, 341, 611, 777
BshNI GGYRCC 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 5 cut(s) 342, 473, 600, 620, 1291
BslI CCNNNNNNNGG 5 cut(s) 508, 599, 606, 747, 879
BsmAI GTCTC 1 cut(s) 659
BsnI GGCC 4 cut(s) 143, 341, 611, 777
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 929
Bsp119I TTCGAA 2 cut(s) 1071, 1085
Bsp1286I GDGCHC 1 cut(s) 680
Bsp13I TCCGGA 2 cut(s) 472, 619
Bsp1407I TGTACA 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 746
BspACI CCGC 4 cut(s) 345, 612, 731, 1263
BspANI GGCC 4 cut(s) 143, 341, 611, 777
BspCNI CTCAG 3 cut(s) 340, 1222, 1381
BspEI TCCGGA 2 cut(s) 472, 619
BspFNI CGCG 1 cut(s) 1166
BspLI GGNNCC 2 cut(s) 679, 735
BspMAI CTGCAG 2 cut(s) 825, 1421
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 7 cut(s) 54, 235, 331, 610, 630, 1127, 1170
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 2 cut(s) 1071, 1085
BspT107I GGYRCC 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 614
BsrFI RCCGGY 2 cut(s) 341, 1290
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 4 cut(s) 1200, 1229, 1405, 1464
BssAI RCCGGY 2 cut(s) 341, 1290
BssECI CCNNGG 4 cut(s) 66, 378, 746, 975
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 66, 378, 746
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 5 cut(s) 126, 134, 528, 786, 1255
Bst6I CTCTTC 2 cut(s) 621, 1355
BstAPI GCANNNNNTGC 2 cut(s) 1320, 1416
BstAUI TGTACA 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 388
BstBI TTCGAA 2 cut(s) 1071, 1085
BstC8I GCNNGC 2 cut(s) 116, 343
BstDEI CTNAG 3 cut(s) 327, 1230, 1389
BstDSI CCRYGG 1 cut(s) 746
BstF5I GGATG 3 cut(s) 367, 625, 1401
BstFNI CGCG 1 cut(s) 1166
BstHHI GCGC 2 cut(s) 668, 1206
BstMAI GTCTC 1 cut(s) 659
BstMWI GCNNNNNNNGC 4 cut(s) 409, 1320, 1326, 1416
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 3 cut(s) 821, 1251, 1417
BstSLI GKGCMC 1 cut(s) 680
BstUI CGCG 1 cut(s) 1166
BstV1I GCAGC 3 cut(s) 1081, 1307, 1405
BstV2I GAAGAC 2 cut(s) 561, 755
BstX2I RGATCY 5 cut(s) 203, 227, 323, 1175, 1385
BstXI CCANNNNNNTGG 3 cut(s) 223, 952, 1195
BstYI RGATCY 5 cut(s) 203, 227, 323, 1175, 1385
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 4 cut(s) 143, 341, 611, 777
BtgI CCRYGG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 3 cut(s) 367, 625, 1401
BtsIMutI CAGTG 5 cut(s) 131, 139, 1193, 1412, 1471
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 116, 343
CfoI GCGC 2 cut(s) 668, 1206
Cfr10I RCCGGY 2 cut(s) 341, 1290
Cfr13I GGNCC 2 cut(s) 609, 776
Csp6I GTAC 4 cut(s) 79, 529, 787, 1461
CviAII CATG 6 cut(s) 58, 91, 464, 606, 747, 904
CviQI GTAC 4 cut(s) 79, 529, 787, 1461
DdeI CTNAG 3 cut(s) 327, 1230, 1389
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 2 cut(s) 621, 1355
EarI CTCTTC 2 cut(s) 621, 1355
EciI GGCGGA 2 cut(s) 360, 746
Eco130I CCWWGG 3 cut(s) 66, 378, 746
Eco31I GGTCTC 1 cut(s) 659
Eco57I CTGAAG 2 cut(s) 570, 1441
Eco88I CYCGRG 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 3 cut(s) 66, 378, 746
ErhI CCWWGG 3 cut(s) 66, 378, 746
FaeI CATG 6 cut(s) 61, 94, 467, 609, 750, 907
FatI CATG 6 cut(s) 57, 90, 463, 605, 746, 903
FauNDI CATATG 1 cut(s) 83
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 612, 1095, 1321, 1394
FokI GGATG 3 cut(s) 354, 612, 1388
Fsp4HI GCNGC 4 cut(s) 612, 1095, 1321, 1394
FspBI CTAG 2 cut(s) 893, 1098
FspI TGCGCA 1 cut(s) 667
GlaI GCGC 2 cut(s) 667, 1205
GluI GCNGC 4 cut(s) 612, 1095, 1321, 1394
GsaI CCCAGC 3 cut(s) 505, 567, 702
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 4 cut(s) 143, 341, 611, 777
HapII CCGG 5 cut(s) 342, 473, 600, 620, 1291
HhaI GCGC 2 cut(s) 668, 1206
Hin1II CATG 6 cut(s) 61, 94, 467, 609, 750, 907
Hin6I GCGC 2 cut(s) 666, 1204
HinP1I GCGC 2 cut(s) 666, 1204
HindIII AAGCTT 1 cut(s) 1236
HinfI GANTC 2 cut(s) 71, 971
HpaII CCGG 5 cut(s) 342, 473, 600, 620, 1291
HphI GGTGA 4 cut(s) 477, 979, 1139, 1280
Hpy166II GTNNAC 2 cut(s) 385, 524
Hpy188I TCNGA 9 cut(s) 175, 183, 330, 372, 711, 916, 1231, 1390, 1502
Hpy8I GTNNAC 2 cut(s) 385, 524
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 821
HpyCH4III ACNGT 5 cut(s) 126, 134, 528, 786, 1255
HpyCH4IV ACGT 3 cut(s) 291, 387, 726
HpyCH4V TGCA 5 cut(s) 823, 1314, 1383, 1410, 1419
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 1320, 1326, 1416
HpyF3I CTNAG 3 cut(s) 327, 1230, 1389
HpySE526I ACGT 3 cut(s) 291, 387, 726
Hsp92II CATG 6 cut(s) 61, 94, 467, 609, 750, 907
HspAI GCGC 2 cut(s) 666, 1204
Kpn2I TCCGGA 2 cut(s) 472, 619
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 460
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 2 cut(s) 572, 733
Lsp1109I GCAGC 3 cut(s) 1081, 1307, 1405
LweI GCATC 3 cut(s) 1038, 1303, 1412
MaeI CTAG 2 cut(s) 893, 1098
MaeII ACGT 3 cut(s) 291, 387, 726
MaeIII GTNAC 2 cut(s) 128, 1493
MbiI CCGCTC 1 cut(s) 614
MboII GAAGA 9 cut(s) 269, 488, 563, 566, 608, 755, 1054, 1342, 1349
MflI RGATCY 5 cut(s) 203, 227, 323, 1175, 1385
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 7 cut(s) 476, 539, 805, 962, 1412, 1442, 1484
MlyI GAGTC 2 cut(s) 80, 980
MmeI TCCRAC 4 cut(s) 372, 395, 734, 1185
MroI TCCGGA 2 cut(s) 472, 619
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 2 cut(s) 542, 960
MslI CAYNNNNRTG 1 cut(s) 950
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 5 cut(s) 342, 473, 600, 620, 1291
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 1166
MwoI GCNNNNNNNGC 4 cut(s) 409, 1320, 1326, 1416
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 746
NdeI CATATG 1 cut(s) 83
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 6 cut(s) 61, 94, 467, 609, 750, 907
NlaIV GGNNCC 2 cut(s) 679, 735
NsbI TGCGCA 1 cut(s) 667
NspV TTCGAA 2 cut(s) 1071, 1085
PaeR7I CTCGAG 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 621
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 1303
PdiI GCCGGC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 4 cut(s) 613, 1096, 1322, 1395
PleI GAGTC 2 cut(s) 79, 979
PpsI GAGTC 2 cut(s) 79, 979
Ppu21I YACGTR 1 cut(s) 388
PsiI TTATAA 1 cut(s) 795
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 3 cut(s) 501, 563, 698
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 679, 735
PspPI GGNCC 2 cut(s) 609, 776
PstI CTGCAG 2 cut(s) 825, 1421
PsuI RGATCY 5 cut(s) 203, 227, 323, 1175, 1385
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 4 cut(s) 80, 530, 788, 1462
RsaNI GTAC 4 cut(s) 79, 529, 787, 1461
RseI CAYNNNNRTG 1 cut(s) 950
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 542, 960
SatI GCNGC 4 cut(s) 612, 1095, 1321, 1394
Sau96I GGNCC 2 cut(s) 609, 776
SchI GAGTC 2 cut(s) 80, 980
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 3 cut(s) 1038, 1303, 1412
SfcI CTRYAG 3 cut(s) 821, 1251, 1417
Sfr274I CTCGAG 1 cut(s) 929
SfuI TTCGAA 2 cut(s) 1071, 1085
SlaI CTCGAG 1 cut(s) 929
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SpeI ACTAGT 1 cut(s) 892
Sse9I AATT 7 cut(s) 476, 539, 805, 962, 1412, 1442, 1484
SsiI CCGC 4 cut(s) 345, 612, 731, 1263
SspI AATATT 1 cut(s) 1076
SspMI CTAG 2 cut(s) 893, 1098
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 66, 378, 746
TaaI ACNGT 5 cut(s) 126, 134, 528, 786, 1255
TaiI ACGT 3 cut(s) 294, 390, 729
TaqI TCGA 8 cut(s) 14, 20, 516, 537, 642, 930, 1071, 1085
TaqII GACCGA 2 cut(s) 170, 967
TasI AATT 7 cut(s) 476, 539, 805, 962, 1412, 1442, 1484
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 614
Tru1I TTAA 2 cut(s) 542, 960
Tru9I TTAA 2 cut(s) 542, 960
TscAI CASTG 5 cut(s) 131, 139, 1200, 1412, 1471
TseI GCWGC 3 cut(s) 1094, 1320, 1393
TspDTI ATGAA 4 cut(s) 29, 409, 768, 920
TspGWI ACGGA 1 cut(s) 1133
TspRI CASTG 5 cut(s) 131, 139, 1200, 1412, 1471
Van91I CCANNNNNTGG 1 cut(s) 508
XapI RAATTY 4 cut(s) 476, 962, 1412, 1484
XhoI CTCGAG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 893, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.