Rmu_sc0001308.1_g000048

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001308.1
OG0005924
Physical Location & Seq
Reverse (-)
182860 .. 183804
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001308.1_g000048.1.cds

Sequence Viewer

Length: 651 bp
atgtgttggacaccttgcgaggtaaggcccaagttcatcaagcgcaaagccaacaaacccaaagctaaagctcgtgatcatggttttccggaatttcaatcaccaaaacgttttccccagctgatggagatcgagggtaaactgtacgctctcgacttacggcctcaagaaggcttctccagctgcagctgcagccccagatcctgctcctgcttctcgtcctttgaggtatttgacccccaaaccggatcatgggccgctcttccggatcatcctccctcgactatggaatgtggtggtctcctctcttgtgcagttttgggcaccaaaatcttgatctctggccgtaagactccggtctactgctttgacgtggcggagcctacccgaccatggaatgaactctgggttcgtcattaccgcggtcaagaactgcccttcccttttcgcagttgtggtgatgatccatatttccgtgtattttacccctccaactcgaatggtagatccttctccgccaaaaagctgggttggcgcacctttgaataccactactggtctgaggacgcttctcccatctttacagaagtgttcggtttagctgtgctcccactccatcaccgccaccgtgtaagttctctggtttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.82

Weight (kDa)

8.91

Isoelectric Point (pI)

74.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 423
AccIII TCCGGA 2 cut(s) 88, 265
AciI CCGC 6 cut(s) 258, 377, 421, 423, 516, 622
AclI AACGTT 1 cut(s) 109
AclWI GGATC 5 cut(s) 195, 256, 276, 458, 501
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 5 cut(s) 124, 170, 245, 252, 393
AgsI TTSAA 2 cut(s) 98, 545
AjiI CACGTC 1 cut(s) 373
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 7 cut(s) 65, 71, 121, 183, 189, 526, 602
AluI AGCT 7 cut(s) 65, 71, 121, 183, 189, 526, 602
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 5 cut(s) 195, 256, 276, 458, 501
AlwNI CAGNNNCTG 1 cut(s) 204
Aor13HI TCCGGA 2 cut(s) 88, 265
AoxI GGCC 4 cut(s) 26, 161, 255, 343
ApeKI GCWGC 4 cut(s) 183, 186, 189, 192
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 45, 537
AspS9I GGNCC 2 cut(s) 27, 255
AsuHPI GGTGA 3 cut(s) 93, 470, 611
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 4 cut(s) 170, 176, 198, 204
BccI CCATC 3 cut(s) 118, 584, 624
BceAI ACGGC 2 cut(s) 176, 330
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 184, 190
BisI GCNGC 5 cut(s) 184, 187, 190, 193, 258
BlsI GCNGC 5 cut(s) 185, 188, 191, 194, 259
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 27, 255
BmiI GGNNCC 2 cut(s) 325, 381
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 392, 421
BsaWI WCCGGW 4 cut(s) 88, 245, 265, 355
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 170, 245, 252, 393
Bse1I ACTGG 1 cut(s) 560
Bse8I GATNNNNATC 1 cut(s) 128
BseAI TCCGGA 2 cut(s) 88, 265
BseDI CCNNGG 2 cut(s) 392, 421
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 5 cut(s) 124, 170, 245, 252, 393
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 4 cut(s) 170, 176, 198, 204
BseYI CCCAGC 2 cut(s) 117, 526
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 4 cut(s) 28, 163, 257, 345
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 4 cut(s) 89, 246, 266, 356
BslI CCNNNNNNNGG 5 cut(s) 124, 170, 245, 252, 393
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 4 cut(s) 28, 163, 257, 345
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 326, 609
Bsp13I TCCGGA 2 cut(s) 88, 265
Bsp143I GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 6 cut(s) 258, 377, 421, 423, 516, 622
BspANI GGCC 4 cut(s) 28, 163, 257, 345
BspCNI CTCAG 1 cut(s) 553
BspEI TCCGGA 2 cut(s) 88, 265
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 325, 381
BspMAI CTGCAG 2 cut(s) 188, 194
BspPI GGATC 5 cut(s) 195, 256, 276, 458, 501
BspQI GCTCTTC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 392, 421
BssMI GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 144, 629
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 561
BstDSI CCRYGG 2 cut(s) 392, 421
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 2 cut(s) 45, 537
BstKTI GATC 8 cut(s) 79, 132, 203, 251, 271, 339, 466, 509
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
BstMWI GCNNNNNNNGC 4 cut(s) 180, 189, 192, 532
BstPAI GACNNNNGTC 1 cut(s) 356
BstSFI CTRYAG 2 cut(s) 184, 190
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 4 cut(s) 170, 176, 198, 204
BstX2I RGATCY 2 cut(s) 200, 506
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 2 cut(s) 200, 506
BsuRI GGCC 4 cut(s) 28, 163, 257, 345
BtgI CCRYGG 2 cut(s) 392, 421
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 204
CfoI GCGC 2 cut(s) 45, 537
Cfr13I GGNCC 2 cut(s) 27, 255
Cfr42I CCGCGG 1 cut(s) 424
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 80, 252, 393
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 561
DpnI GATC 8 cut(s) 78, 131, 202, 250, 270, 338, 465, 508
DpnII GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 2 cut(s) 392, 505
Eco130I CCWWGG 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 3 cut(s) 83, 255, 396
FaiI YATR 5 cut(s) 81, 253, 287, 394, 469
FatI CATG 3 cut(s) 79, 251, 392
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 184, 187, 190, 193, 258
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 184, 187, 190, 193, 258
GlaI GCGC 2 cut(s) 44, 536
GluI GCNGC 5 cut(s) 184, 187, 190, 193, 258
GsaI CCCAGC 2 cut(s) 121, 530
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 4 cut(s) 28, 163, 257, 345
HapII CCGG 4 cut(s) 89, 246, 266, 356
HgaI GACGC 1 cut(s) 575
HhaI GCGC 2 cut(s) 45, 537
Hin1II CATG 3 cut(s) 83, 255, 396
Hin6I GCGC 2 cut(s) 43, 535
HinP1I GCGC 2 cut(s) 43, 535
HinfI GANTC 1 cut(s) 352
HpaII CCGG 4 cut(s) 89, 246, 266, 356
HphI GGTGA 3 cut(s) 93, 470, 611
Hpy166II GTNNAC 3 cut(s) 140, 361, 646
Hpy188I TCNGA 1 cut(s) 562
Hpy188III TCNNGA 7 cut(s) 74, 89, 152, 167, 266, 334, 428
Hpy8I GTNNAC 3 cut(s) 140, 361, 646
HpyAV CCTTC 3 cut(s) 164, 448, 520
HpyCH4III ACNGT 2 cut(s) 144, 629
HpyCH4IV ACGT 2 cut(s) 109, 372
HpyCH4V TGCA 3 cut(s) 186, 192, 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 189, 192, 532
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 2 cut(s) 109, 372
Hsp92II CATG 3 cut(s) 83, 255, 396
HspAI GCGC 2 cut(s) 43, 535
Kpn2I TCCGGA 2 cut(s) 88, 265
Ksp22I TGATCA 1 cut(s) 76
KspI CCGCGG 1 cut(s) 424
Kzo9I GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 212, 379, 612
Lsp1109I GCAGC 4 cut(s) 170, 176, 198, 204
MaeII ACGT 2 cut(s) 109, 372
MalI GATC 8 cut(s) 78, 131, 202, 250, 270, 338, 465, 508
MbiI CCGCTC 1 cut(s) 260
MboI GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
MboII GAAGA 1 cut(s) 254
MflI RGATCY 2 cut(s) 200, 506
MhlI GDGCHC 2 cut(s) 326, 609
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 9 cut(s) 13, 127, 174, 220, 285, 289, 314, 499, 556
MroI TCCGGA 2 cut(s) 88, 265
MspA1I CMGCKG 4 cut(s) 121, 183, 189, 423
MspI CCGG 4 cut(s) 89, 246, 266, 356
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 180, 189, 192, 532
NcoI CCATGG 1 cut(s) 392
NdeII GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
NlaIII CATG 3 cut(s) 83, 255, 396
NlaIV GGNNCC 2 cut(s) 325, 381
PciSI GCTCTTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 5 cut(s) 185, 188, 191, 194, 259
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 356
Psp1406I AACGTT 1 cut(s) 109
PspFI CCCAGC 2 cut(s) 117, 526
PspN4I GGNNCC 2 cut(s) 325, 381
PspPI GGNCC 2 cut(s) 27, 255
PstI CTGCAG 2 cut(s) 188, 194
PstNI CAGNNNCTG 1 cut(s) 204
PsuI RGATCY 2 cut(s) 200, 506
PvuII CAGCTG 3 cut(s) 121, 183, 189
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacII CCGCGG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 5 cut(s) 184, 187, 190, 193, 258
Sau3AI GATC 8 cut(s) 76, 129, 200, 248, 268, 336, 463, 506
Sau96I GGNCC 2 cut(s) 27, 255
SchI GAGTC 1 cut(s) 346
SduI GDGCHC 2 cut(s) 326, 609
SfcI CTRYAG 2 cut(s) 184, 190
Sfr303I CCGCGG 1 cut(s) 424
SgrBI CCGCGG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 1 cut(s) 92
SsiI CCGC 6 cut(s) 258, 377, 421, 423, 516, 622
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 144, 629
TaiI ACGT 2 cut(s) 112, 375
TaqI TCGA 4 cut(s) 132, 153, 281, 497
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 260
TseI GCWGC 4 cut(s) 183, 186, 189, 192
TspDTI ATGAA 2 cut(s) 25, 414
TspGWI ACGGA 1 cut(s) 464
Van91I CCANNNNNTGG 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.