Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Reverse (-)

63595769 .. 63605964

Gene Structure 10196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG408200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGCTGAGGCGGATTGGGTCTCGACCAAGTCGCTGTATATTTGTTGCATGGAGAGATATAGGGACGAGCTCGGGTTTTCACATTGTTACAGTGTCCAGGCCCTCAACTTGACCGACTTGCTCACCTTTTCCGATACGCCGATTACCATCTCTTTTTCCAGATCTCCACTAACCGAATCTATGAGATCTCCAATAGCAACCAAAGCTATGAGCCACGACCAAGACCAAGACCATATTCTGCGAGAAGTTTATTTTCTTCCAGGGAACGACGTTCCCTACGATATGGGTTTTGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTAGAACGTCCACATCGACATCGGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATTGGTGGATTTTTCATAAGATGCGTGGGGTTTTCTTTACATTCGAATATTCTTTTTCGAAATCTGCTGCTAGTCCTGACACTCGTACCAGCAGTTGTGGTGATGATCCATATTTCCGTGTGTTTTACCCCTCCAACTCGAATGGTAGATCCTTTTCTGCCAAAACACTGGGTTGGCGCACCTTTGAATACCACTACTGGTCTGAGGAAGCTTCTCCCATATCTACAGAAGTGTGCGGTTTAGCTGTGCTTCTACTCCATCACGGTCACCGTGTTGAGTATGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.82

Weight (kDa)

5.9

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	3 cut(s)	14, 327, 624
AclWI	GGATC	3 cut(s)	313, 488, 531
AcoI	YGGCCR	1 cut(s)	321
AfaI	GTAC	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	99, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	4 cut(s)	73, 209, 599, 632
AluI	AGCT	4 cut(s)	73, 209, 599, 632
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	3 cut(s)	313, 488, 531
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	102, 321
ApeKI	GCWGC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	118, 500, 647
AsuII	TTCGAA	2 cut(s)	432, 446
AvaI	CYCGRG	1 cut(s)	74
BaeI	ACNNNNGTAYC	2 cut(s)	457, 490
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	2 cut(s)	158, 654
BciT130I	CCWGG	2 cut(s)	101, 264
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	332, 459
BfmI	CTRYAG	1 cut(s)	612
BglII	AGATCT	2 cut(s)	164, 188
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	101, 264
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	101, 264
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	2 cut(s)	432, 446
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	263, 360
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	561, 590
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	101, 264
BseDI	CCNNGG	2 cut(s)	263, 360
BseJI	GATNNNNATC	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	323, 582
BseNI	ACTGG	2 cut(s)	561, 590
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	2 cut(s)	104, 323
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	104, 323
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	2 cut(s)	432, 446
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	164, 188, 305, 493, 536
BspACI	CCGC	3 cut(s)	14, 327, 624
BspANI	GGCC	2 cut(s)	104, 323
BspCNI	CTCAG	2 cut(s)	322, 583
BspPI	GGATC	3 cut(s)	313, 488, 531
BspT104I	TTCGAA	2 cut(s)	432, 446
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	561, 590
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	263, 360
BssMI	GATC	5 cut(s)	164, 188, 305, 493, 536
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	101, 264
Bst4CI	ACNGT	3 cut(s)	95, 653, 659
BstBAI	YACGTR	1 cut(s)	370
BstBI	TTCGAA	2 cut(s)	432, 446
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	9, 309, 591
BstEII	GGTNACC	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	5 cut(s)	167, 191, 308, 496, 539
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	5 cut(s)	164, 188, 305, 493, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	101, 264
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	99, 262
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	4 cut(s)	164, 188, 305, 536
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	4 cut(s)	164, 188, 305, 536
BsuRI	GGCC	2 cut(s)	104, 323
BtsIMutI	CAGTG	2 cut(s)	100, 554
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	8 cut(s)	8, 73, 104, 209, 216, 323, 599, 632
CviKI_1	RGCY	8 cut(s)	8, 73, 104, 209, 216, 323, 599, 632
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	3 cut(s)	9, 309, 591
DpnI	GATC	5 cut(s)	166, 190, 307, 495, 538
DpnII	GATC	5 cut(s)	164, 188, 305, 493, 536
DrdI	GACNNNNNNGTC	1 cut(s)	336
DseDI	GACNNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	321
EciI	GGCGGA	2 cut(s)	29, 342
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	99, 262
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	55
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	456
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	2 cut(s)	332, 459
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	104, 323
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	118, 500, 647
Hpy166II	GTNNAC	2 cut(s)	341, 367
Hpy188I	TCNGA	4 cut(s)	136, 312, 354, 592
Hpy188III	TCNNGA	3 cut(s)	25, 162, 464
Hpy8I	GTNNAC	2 cut(s)	341, 367
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	95, 653, 659
HpyCH4IV	ACGT	3 cut(s)	273, 337, 369
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	9, 309, 591
HpySE526I	ACGT	3 cut(s)	273, 337, 369
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	565
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	164, 188, 305, 493, 536
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	332, 459
MaeII	ACGT	3 cut(s)	273, 337, 369
MaeIII	GTNAC	2 cut(s)	89, 653
MalI	GATC	5 cut(s)	166, 190, 307, 495, 538
MboI	GATC	5 cut(s)	164, 188, 305, 493, 536
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	4 cut(s)	164, 188, 305, 536
MhlI	GDGCHC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	354, 546
MnlI	CCTC	4 cut(s)	4, 116, 529, 586
MroNI	GCCGGC	1 cut(s)	323
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	101, 264
MvaI	CCWGG	2 cut(s)	101, 264
MwoI	GCNNNNNNNGC	1 cut(s)	206
NaeI	GCCGGC	1 cut(s)	325
NdeII	GATC	5 cut(s)	164, 188, 305, 493, 536
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	653
NspV	TTCGAA	2 cut(s)	432, 446
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 343
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	99, 262
PspEI	GGTNACC	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	99, 262
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	4 cut(s)	164, 188, 305, 536
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	5 cut(s)	164, 188, 305, 493, 536
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	101, 264
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	2 cut(s)	432, 446
SsiI	CCGC	3 cut(s)	14, 327, 624
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	332, 459
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	99, 262
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	95, 653, 659
TaiI	ACGT	3 cut(s)	276, 340, 372
TaqI	TCGA	5 cut(s)	26, 346, 432, 446, 527
TaqII	GACCGA	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	2 cut(s)	100, 561
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	100, 561
Tth111I	GACNNNGTC	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	332, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.