Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Reverse (-)

4196764 .. 4197437

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACGTCATATTCTTCCCTTGTTGTGAACCTGCCTCATCCGTTGTGGGCACCAAGTTCTTGATCTCTGGTCGGAAGACTCCGGTCTACTGCTTTGACATGGCGGAGCCTACCCGACCATGGAATGAACTCTGGGTTAGTCATGACCGCCATGAACTGTACGATTATAATAAACCCAGAGCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGATAATCATAAGATATTATTTTTCTCCCGTGGAAACAATATACTATTCTTCCACATGAACCTGTCGAATGATCTTGTTCTCGAGCGTATAGCAACCATAGAGGTGGATATTAAATTTGATGAGTGCTCAGTCACTTTGACCCATCTTGGAGGTCAAAAAGTATGCTTTGTGTGCTTGGATTGGTGGATTTTTCATAAGATGCGTGGGGTTTTCTTCACATTTGAATATTCCTTTTCGAAATCTGCTGCTAGTCCTGACACTCATACCAGCAGTTGTGGTGATGATCCATGTTTCCGTGTGTTTTACCCCTCCAACCCGAATGGTAGATCCTTCTCTGCCAAAACCCTGGGTTGGCGTACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

22.6

Weight (kDa)

6.15

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
Acc36I	ACCTGC	2 cut(s)	40, 187
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	2 cut(s)	104, 148
AclWI	GGATC	2 cut(s)	500, 543
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	2 cut(s)	161, 580
AfiI	CCNNNNNNNGG	2 cut(s)	120, 573
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	567
Alw21I	GWGCWC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	500, 543
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	569
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	194
BfuAI	ACCTGC	2 cut(s)	40, 187
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	52, 108
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	411
BoxI	GACNNNNGTC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	119, 250, 567, 568
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 573
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	119, 250, 567, 568
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	120, 573
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	120, 573
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	53, 184, 350
Bsp143I	GATC	4 cut(s)	63, 292, 505, 548
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	104, 148
BspCNI	CTCAG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	52, 108
BspMAI	CTGCAG	1 cut(s)	198
BspMI	ACCTGC	2 cut(s)	40, 187
BspPI	GGATC	2 cut(s)	500, 543
BspT104I	TTCGAA	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	119, 250, 567, 568
BssMI	GATC	4 cut(s)	63, 292, 505, 548
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	458
BstDEI	CTNAG	1 cut(s)	349
BstDSI	CCRYGG	2 cut(s)	119, 250
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	66, 295, 508, 551
BstMBI	GATC	4 cut(s)	63, 292, 505, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	1 cut(s)	569
BstPAI	GACNNNNGTC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	2 cut(s)	325, 568
BstYI	RGATCY	1 cut(s)	548
BtgI	CCRYGG	2 cut(s)	119, 250
BtsCI	GGATG	1 cut(s)	38
BveI	ACCTGC	2 cut(s)	40, 187
CciI	TCATGA	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	160, 579
CviAII	CATG	6 cut(s)	100, 120, 143, 152, 277, 510
CviJI	RGCY	2 cut(s)	109, 182
CviKI_1	RGCY	2 cut(s)	109, 182
CviQI	GTAC	2 cut(s)	160, 579
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	4 cut(s)	65, 294, 507, 550
DpnII	GATC	4 cut(s)	63, 292, 505, 548
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	6 cut(s)	103, 123, 146, 155, 280, 513
FatI	CATG	6 cut(s)	99, 119, 142, 151, 276, 509
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	1 cut(s)	468
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	6 cut(s)	103, 123, 146, 155, 280, 513
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	29, 88
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	4 cut(s)	61, 143, 302, 476
Hpy8I	GTNNAC	2 cut(s)	29, 88
HpyAV	CCTTC	2 cut(s)	194, 562
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	103, 123, 146, 155, 280, 513
Kzo9I	GATC	4 cut(s)	63, 292, 505, 548
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	4 cut(s)	65, 294, 507, 550
MboI	GATC	4 cut(s)	63, 292, 505, 548
MboII	GAAGA	4 cut(s)	7, 88, 262, 427
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	53, 184, 350
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	53, 558
MnlI	CCTC	6 cut(s)	46, 211, 214, 316, 365, 541
MseI	TTAA	2 cut(s)	333, 586
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	63, 292, 505, 548
NlaIII	CATG	6 cut(s)	103, 123, 146, 155, 280, 513
NlaIV	GGNNCC	2 cut(s)	52, 108
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	142
PasI	CCCWGGG	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	52, 108
PstI	CTGCAG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	161, 580
RsaNI	GTAC	2 cut(s)	160, 579
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	333, 586
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	63, 292, 505, 548
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	3 cut(s)	53, 184, 350
SetI	ASST	6 cut(s)	9, 34, 201, 285, 327, 376
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	194
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	104, 148
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	287, 303, 458
TasI	AATT	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	333, 586
Tru9I	TTAA	2 cut(s)	333, 586
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	5 cut(s)	17, 141, 168, 293, 404
TspGWI	ACGGA	2 cut(s)	31, 506
XapI	RAATTY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.