Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001308.1

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Reverse (-)

129994 .. 137362

Gene Structure 7369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001308.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

atggaggctgaggcggattgggtctcgaccaagtcgctgtacatatgtagcatggagagatataaggacgagagcgtgcttacacagtgttacagtgtccaggccatcaacttgaccgacttgctctccttttccgatactccgattaccatctctttctccagatctccaccaaccaaagctatgggatctccaccaaccaaagtccaagaccatatcctgcgagaagttgattttcttcaaggcaacgacgttccctacgagatgggtttcggtgtgtttggatctcagattgttttggccggcggacttcaacttccacaaatacatccgacttccaaggtctacgtgttggacaccttgcgagataagcccaagttcatcaaacgcaaagccaacaaacctaaagctaaagctcgtgatcatggttttccggaatttcaatcaccaaaatatcttccccagctgatggagatcgagggtaaactgtacgctgtcgaattaaagcctgaagaagacttccccagctcctcgtcctttgaggtatttgacccccaaaccggatcatgggccgctcttccggatcatcctcccccgattatcgaatgtggtggtctcctctcctgcgcagttgtgggcaccaagttcttgatctctgctggggatactccgacctactgctttgacgtggcggagcctacccgaccatggaatgaacttcgtcttcgtaatgacggccctaaactgtacgattataatgaccccaattcccttccctttctgcaggttttggttttggacttggaggaggataatcataagatattattttcctcctctgggaacgatatactagtcttccacatgaacctgtccaatgatctcgctctcgagcttatagcaaccatacgggtggatattaaatttgatgagtcctcggtcagtttcacccatcttggaggtcaaaaagtatgctttgtgttcttggattggtggatttttgataagatgcgtggggttttcttcacattcgaatattccttttcgaaatctgctgctagtcctgacactcagaccagcagttgtggtgatgatccatatttccgtgtgttttacccctccaactcgaatggtacatccttttctgccaaaacactgggttggcgcacctttgaataccactactggtctgaggaagcttctcccatatctacatatgtgtgcggtttagctgtgcttccactccatcaccggcatcgtgaggagcgtgcaatctgcaaaagctgcggacgctactttcccgatatagaactcttcaatcgtcacttatctatcaatcctcgttgcagatctgagcagcaactcatccagtgcaaattctgcggatgctacttttccaagcaagaattgtttgctcacttcaatggatttgttgacagctccacagagccattggctcctccaactcccacctttgaacaagagaagcctctgggcaatcatgagaatgataacgccttggagatggatcgttcgaaggagcttgtggatgaattagtagagtcagttgaagtttcgaagaaggctgctatggagcagaccgtagaaggttcagtagttgtgcctgggtcgactgattctgcatctcagcagcccgccaacctccctgctgcccagcaccgcagccctgcccagctcgcctactcctcgcaagaccgctacttgctccctgcgcgcgcccctgcgctctctaccttctgcttgctgtacactgtagccattcgcccagcatccccacctgctgcacacctacgcaccagatgtcgacttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaaccaggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcagctattttgatgcgacaccatatgaacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggtaatgtccaaaattccctcctccctgacttgaaggttcaatggaagaatctgcgctttgctgatttcaagtctcggtaccctaagaatgggggatatgagggacgtatggacccatataaccgccctaaccaggaaggaaaccgcaagtttggtgtggatacacgtggtggtaatgctacacgtgggagaggaaatcgtggtatccctagccgtaatggtggcgccatgggtcgtggtggtggcaccaacctcctagggaatgctagcaacgtgcacaacgcaagcgaggaactagctgaaagatacagggcatatagggacctgagagagcaagaagtgtaccttgcagaagaagaagaagttggtggagatgtcaatctcaccatagaggacttcaaagctgaagatgaagtgctcaaggatgcagcagactttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

836

Amino Acids

93.99

Weight (kDa)

5.59

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AarI	CACCTGC	1 cut(s)	1807
Acc16I	TGCGCA	1 cut(s)	628
Acc36I	ACCTGC	2 cut(s)	775, 1807
Acc65I	GGTACC	1 cut(s)	2145
AccB1I	GGYRCC	5 cut(s)	638, 1915, 2145, 2291, 2312
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	575
AccI	GTMKAC	3 cut(s)	345, 1631, 1825
AccII	CGCG	2 cut(s)	1735, 1737
AccIII	TCCGGA	2 cut(s)	433, 580
AclWI	GGATC	7 cut(s)	196, 292, 571, 591, 1088, 1536, 1935
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	4 cut(s)	437, 923, 1376, 2080
AcuI	CTGAAG	2 cut(s)	531, 2493
AcvI	CACGTG	2 cut(s)	2234, 2252
AcyI	GRCGYC	1 cut(s)	2292
AdeI	CACNNNGTG	1 cut(s)	2237
AfaI	GTAC	7 cut(s)	41, 491, 749, 1135, 1769, 2147, 2411
AfeI	AGCGCT	2 cut(s)	2052, 2063
AfiI	CCNNNNNNNGG	8 cut(s)	469, 560, 567, 708, 840, 1858, 2156, 2200
AflIII	ACRYGT	3 cut(s)	348, 2231, 2249
AhlI	ACTAGT	1 cut(s)	853
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	5 cut(s)	99, 1624, 1911, 1923, 2199
AjuI	GAANNNNNNNTTGG	4 cut(s)	2049, 2081, 2415, 2447
AloI	GAACNNNNNNTCC	2 cut(s)	1919, 1951
Alw21I	GWGCWC	2 cut(s)	2346, 2487
Alw26I	GTCTC	3 cut(s)	28, 620, 2145
Alw44I	GTGCAC	1 cut(s)	2342
AlwI	GGATC	7 cut(s)	196, 292, 571, 591, 1088, 1536, 1935
Ama87I	CYCGRG	1 cut(s)	890
Aor13HI	TCCGGA	2 cut(s)	433, 580
Aor51HI	AGCGCT	2 cut(s)	2052, 2063
AoxI	GGCC	4 cut(s)	102, 300, 570, 736
ApaLI	GTGCAC	1 cut(s)	2342
ApoI	RAATTY	4 cut(s)	437, 923, 1376, 2080
Asp718I	GGTACC	1 cut(s)	2145
AspA2I	CCTAGG	1 cut(s)	2323
AspS9I	GGNCC	4 cut(s)	570, 737, 2179, 2389
AsuHPI	GGTGA	5 cut(s)	438, 940, 1100, 1241, 2443
AsuII	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
AsuNHI	GCTAGC	1 cut(s)	2333
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	2 cut(s)	2179, 2389
AvrII	CCTAGG	1 cut(s)	2323
BaeGI	GKGCMC	2 cut(s)	641, 2346
BanI	GGYRCC	5 cut(s)	638, 1915, 2145, 2291, 2312
BauI	CACGAG	1 cut(s)	417
BbrPI	CACGTG	2 cut(s)	2234, 2252
BbsI	GAAGAC	3 cut(s)	522, 716, 850
Bbv12I	GWGCWC	2 cut(s)	2346, 2487
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	8 cut(s)	113, 158, 259, 463, 960, 1254, 1519, 1887
BceAI	ACGGC	2 cut(s)	751, 2265
BciT130I	CCWGG	5 cut(s)	101, 1626, 1913, 1925, 2201
BciVI	GTATCC	3 cut(s)	658, 2221, 2282
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	28, 620, 2145
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	7 cut(s)	854, 1059, 2054, 2277, 2324, 2334, 2363
BfmI	CTRYAG	2 cut(s)	782, 1773
BfoI	RGCGCY	3 cut(s)	2054, 2065, 2295
BfuAI	ACCTGC	2 cut(s)	775, 1807
BfuI	GTATCC	3 cut(s)	658, 2221, 2282
BglII	AGATCT	2 cut(s)	164, 1349
BlnI	CCTAGG	1 cut(s)	2323
Bme1390I	CCNGG	5 cut(s)	101, 1626, 1913, 1925, 2201
Bme18I	GGWCC	2 cut(s)	2179, 2389
BmeT110I	CYCGRG	1 cut(s)	890
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	4 cut(s)	570, 737, 2179, 2389
BmiI	GGNNCC	9 cut(s)	640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
BmrFI	CCNGG	5 cut(s)	101, 1626, 1913, 1925, 2201
BmrI	ACTGGG	1 cut(s)	1166
BmsI	GCATC	7 cut(s)	999, 1264, 1376, 1652, 1799, 1968, 2482
BmtI	GCTAGC	1 cut(s)	2337
BmuI	ACTGGG	1 cut(s)	1166
BpiI	GAAGAC	3 cut(s)	522, 716, 850
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
BpuEI	CTTGAG	2 cut(s)	1947, 2471
BsaAI	YACGTR	3 cut(s)	349, 2234, 2252
BsaBI	GATNNNNATC	3 cut(s)	149, 473, 2445
BsaHI	GRCGYC	1 cut(s)	2292
BsaI	GGTCTC	2 cut(s)	28, 620
BsaJI	CCNNGG	7 cut(s)	339, 707, 936, 1518, 1625, 2295, 2323
BsaWI	WCCGGW	3 cut(s)	433, 560, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 2003, 2033
Bsc4I	CCNNNNNNNGG	8 cut(s)	469, 560, 567, 708, 840, 1858, 2156, 2200
Bse118I	RCCGGY	2 cut(s)	302, 1251
Bse1I	ACTGG	3 cut(s)	1161, 1190, 1369
Bse8I	GATNNNNATC	3 cut(s)	149, 473, 2445
BseAI	TCCGGA	2 cut(s)	433, 580
BseBI	CCWGG	5 cut(s)	101, 1626, 1913, 1925, 2201
BseDI	CCNNGG	7 cut(s)	339, 707, 936, 1518, 1625, 2295, 2323
BseGI	GGATG	8 cut(s)	328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BseJI	GATNNNNATC	3 cut(s)	149, 473, 2445
BseLI	CCNNNNNNNGG	8 cut(s)	469, 560, 567, 708, 840, 1858, 2156, 2200
BseMII	CTCAG	7 cut(s)	302, 1085, 1182, 1344, 1661, 2017, 2384
BseNI	ACTGG	3 cut(s)	1161, 1190, 1369
BsePI	GCGCGC	2 cut(s)	1733, 1735
BseRI	GAGGAG	8 cut(s)	520, 608, 821, 826, 1277, 1449, 1696, 2078
BseSI	GKGCMC	2 cut(s)	641, 2346
BseYI	CCCAGC	6 cut(s)	462, 524, 659, 1674, 1692, 1786
BsgI	GTGCAG	1 cut(s)	1788
Bsh1236I	CGCG	2 cut(s)	1735, 1737
BshFI	GGCC	4 cut(s)	104, 302, 572, 738
BshNI	GGYRCC	5 cut(s)	638, 1915, 2145, 2291, 2312
BsiHKAI	GWGCWC	2 cut(s)	2346, 2487
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	5 cut(s)	303, 434, 561, 581, 1252
BslFI	GGGAC	2 cut(s)	2184, 2402
BslI	CCNNNNNNNGG	8 cut(s)	469, 560, 567, 708, 840, 1858, 2156, 2200
BsmAI	GTCTC	3 cut(s)	28, 620, 2145
BsmFI	GGGAC	2 cut(s)	2184, 2402
BsmI	GAATGC	2 cut(s)	2035, 2335
BsnI	GGCC	4 cut(s)	104, 302, 572, 738
Bso31I	GGTCTC	2 cut(s)	28, 620
BsoBI	CYCGRG	1 cut(s)	890
Bsp119I	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
Bsp1286I	GDGCHC	3 cut(s)	641, 2346, 2487
Bsp13I	TCCGGA	2 cut(s)	433, 580
Bsp1407I	TGTACA	2 cut(s)	39, 1767
Bsp19I	CCATGG	2 cut(s)	707, 2295
BspANI	GGCC	4 cut(s)	104, 302, 572, 738
BspCNI	CTCAG	7 cut(s)	301, 1084, 1183, 1345, 1660, 2016, 2385
BspEI	TCCGGA	2 cut(s)	433, 580
BspFNI	CGCG	2 cut(s)	1735, 1737
BspHI	TCATGA	1 cut(s)	1501
BspLI	GGNNCC	9 cut(s)	640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
BspMAI	CTGCAG	1 cut(s)	786
BspMI	ACCTGC	2 cut(s)	775, 1807
BspOI	GCTAGC	1 cut(s)	2337
BspPI	GGATC	7 cut(s)	196, 292, 571, 591, 1088, 1536, 1935
BspQI	GCTCTTC	2 cut(s)	582, 2052
BspT104I	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
BspT107I	GGYRCC	5 cut(s)	638, 1915, 2145, 2291, 2312
BspTNI	GGTCTC	2 cut(s)	28, 620
BsrBI	CCGCTC	1 cut(s)	575
BsrFI	RCCGGY	2 cut(s)	302, 1251
BsrGI	TGTACA	2 cut(s)	39, 1767
BsrI	ACTGG	3 cut(s)	1161, 1190, 1369
BssAI	RCCGGY	2 cut(s)	302, 1251
BssECI	CCNNGG	7 cut(s)	339, 707, 936, 1518, 1625, 2295, 2323
BssHII	GCGCGC	2 cut(s)	1733, 1735
BssNI	GRCGYC	1 cut(s)	2292
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	5 cut(s)	339, 707, 1518, 2295, 2323
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	5 cut(s)	101, 1626, 1913, 1925, 2201
Bst4CI	ACNGT	7 cut(s)	87, 95, 489, 747, 1603, 1774, 1856
Bst6I	CTCTTC	3 cut(s)	582, 1319, 2052
BstACI	GRCGYC	1 cut(s)	2292
BstAPI	GCANNNNNTGC	2 cut(s)	1284, 1380
BstAUI	TGTACA	2 cut(s)	39, 1767
BstBAI	YACGTR	3 cut(s)	349, 2234, 2252
BstBI	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
BstDEI	CTNAG	9 cut(s)	9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
BstDSI	CCRYGG	2 cut(s)	707, 2295
BstEII	GGTNACC	1 cut(s)	1861
BstF5I	GGATG	8 cut(s)	328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BstFNI	CGCG	2 cut(s)	1735, 1737
BstH2I	RGCGCY	3 cut(s)	2054, 2065, 2295
BstMAI	GTCTC	3 cut(s)	28, 620, 2145
BstMWI	GCNNNNNNNGC	8 cut(s)	370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
BstNI	CCWGG	5 cut(s)	101, 1626, 1913, 1925, 2201
BstNSI	RCATGY	1 cut(s)	1961
BstPI	GGTNACC	1 cut(s)	1861
BstSCI	CCNGG	5 cut(s)	99, 1624, 1911, 1923, 2199
BstSFI	CTRYAG	2 cut(s)	782, 1773
BstSLI	GKGCMC	2 cut(s)	641, 2346
BstUI	CGCG	2 cut(s)	1735, 1737
BstV2I	GAAGAC	3 cut(s)	522, 716, 850
BstX2I	RGATCY	5 cut(s)	164, 188, 284, 1349, 1927
BstXI	CCANNNNNNTGG	3 cut(s)	184, 913, 1156
BstYI	RGATCY	5 cut(s)	164, 188, 284, 1349, 1927
BsuI	GTATCC	3 cut(s)	658, 2221, 2282
BsuRI	GGCC	4 cut(s)	104, 302, 572, 738
BtgI	CCRYGG	2 cut(s)	707, 2295
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	8 cut(s)	328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BtsIMutI	CAGTG	5 cut(s)	92, 100, 1154, 1376, 1770
BveI	ACCTGC	2 cut(s)	775, 1807
CciI	TCATGA	1 cut(s)	1501
Cfr10I	RCCGGY	2 cut(s)	302, 1251
Cfr13I	GGNCC	4 cut(s)	570, 737, 2179, 2389
CseI	GACGC	1 cut(s)	1299
Csp6I	GTAC	7 cut(s)	40, 490, 748, 1134, 1768, 2146, 2410
CviAII	CATG	8 cut(s)	52, 425, 567, 708, 865, 1502, 1958, 2296
CviQI	GTAC	7 cut(s)	40, 490, 748, 1134, 1768, 2146, 2410
DdeI	CTNAG	9 cut(s)	9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
DinI	GGCGCC	1 cut(s)	2293
DraIII	CACNNNGTG	1 cut(s)	2237
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	3 cut(s)	582, 1319, 2052
EarI	CTCTTC	3 cut(s)	582, 1319, 2052
EciI	GGCGGA	3 cut(s)	29, 321, 707
Eco130I	CCWWGG	5 cut(s)	339, 707, 1518, 2295, 2323
Eco31I	GGTCTC	2 cut(s)	28, 620
Eco47I	GGWCC	2 cut(s)	2179, 2389
Eco47III	AGCGCT	2 cut(s)	2052, 2063
Eco57I	CTGAAG	2 cut(s)	531, 2493
Eco72I	CACGTG	2 cut(s)	2234, 2252
Eco88I	CYCGRG	1 cut(s)	890
Eco91I	GGTNACC	1 cut(s)	1861
EcoO109I	RGGNCCY	1 cut(s)	2389
EcoO65I	GGTNACC	1 cut(s)	1861
EcoRII	CCWGG	5 cut(s)	99, 1624, 1911, 1923, 2199
EcoT14I	CCWWGG	5 cut(s)	339, 707, 1518, 2295, 2323
EgeI	GGCGCC	1 cut(s)	2293
EheI	GGCGCC	1 cut(s)	2293
ErhI	CCWWGG	5 cut(s)	339, 707, 1518, 2295, 2323
FaeI	CATG	8 cut(s)	55, 428, 570, 711, 868, 1505, 1961, 2299
FalI	AAGNNNNNCTT	2 cut(s)	2397, 2429
FaqI	GGGAC	2 cut(s)	2184, 2402
FatI	CATG	8 cut(s)	51, 424, 566, 707, 864, 1501, 1957, 2295
FauI	CCCGC	1 cut(s)	1663
FauNDI	CATATG	3 cut(s)	44, 1216, 1989
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	3 cut(s)	345, 1631, 1825
FokI	GGATG	8 cut(s)	315, 573, 1123, 1352, 1398, 1562, 1777, 2504
FspBI	CTAG	7 cut(s)	854, 1059, 2054, 2277, 2324, 2334, 2363
FspI	TGCGCA	1 cut(s)	628
GsaI	CCCAGC	6 cut(s)	466, 528, 663, 1678, 1696, 1790
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	3 cut(s)	2054, 2065, 2295
HaeIII	GGCC	4 cut(s)	104, 302, 572, 738
HapII	CCGG	5 cut(s)	303, 434, 561, 581, 1252
HgaI	GACGC	1 cut(s)	1299
Hin1I	GRCGYC	1 cut(s)	2292
Hin1II	CATG	8 cut(s)	55, 428, 570, 711, 868, 1505, 1961, 2299
HincII	GTYRAC	3 cut(s)	1435, 1632, 1826
HindII	GTYRAC	3 cut(s)	1435, 1632, 1826
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	5 cut(s)	932, 1562, 1637, 1832, 2116
HpaII	CCGG	5 cut(s)	303, 434, 561, 581, 1252
HphI	GGTGA	5 cut(s)	438, 940, 1100, 1241, 2443
Hpy166II	GTNNAC	8 cut(s)	346, 485, 1435, 1632, 1770, 1826, 2344, 2410
Hpy8I	GTNNAC	8 cut(s)	346, 485, 1435, 1632, 1770, 1826, 2344, 2410
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	7 cut(s)	782, 1531, 1576, 1601, 1765, 2095, 2198
HpyCH4III	ACNGT	7 cut(s)	87, 95, 489, 747, 1603, 1774, 1856
HpyCH4IV	ACGT	7 cut(s)	252, 348, 687, 2173, 2233, 2251, 2340
HpyF10VI	GCNNNNNNNGC	8 cut(s)	370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
HpyF3I	CTNAG	9 cut(s)	9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
HpySE526I	ACGT	7 cut(s)	252, 348, 687, 2173, 2233, 2251, 2340
Hsp92I	GRCGYC	1 cut(s)	2292
Hsp92II	CATG	8 cut(s)	55, 428, 570, 711, 868, 1505, 1961, 2299
KasI	GGCGCC	1 cut(s)	2291
Kpn2I	TCCGGA	2 cut(s)	433, 580
KpnI	GGTACC	1 cut(s)	2149
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	421
LguI	GCTCTTC	2 cut(s)	582, 2052
LmnI	GCTCC	8 cut(s)	533, 694, 1264, 1445, 1462, 1540, 1594, 1731
LweI	GCATC	7 cut(s)	999, 1264, 1376, 1652, 1799, 1968, 2482
MaeI	CTAG	7 cut(s)	854, 1059, 2054, 2277, 2324, 2334, 2363
MaeII	ACGT	7 cut(s)	252, 348, 687, 2173, 2233, 2251, 2340
MaeIII	GTNAC	3 cut(s)	89, 1322, 1861
MbiI	CCGCTC	1 cut(s)	575
MflI	RGATCY	5 cut(s)	164, 188, 284, 1349, 1927
MhlI	GDGCHC	3 cut(s)	641, 2346, 2487
MluCI	AATT	8 cut(s)	437, 500, 766, 923, 1376, 1406, 1553, 2080
Mly113I	GGCGCC	1 cut(s)	2292
MlyI	GAGTC	3 cut(s)	941, 1571, 1826
MmeI	TCCRAC	5 cut(s)	333, 356, 695, 1146, 1487
MroI	TCCGGA	2 cut(s)	433, 580
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	2 cut(s)	503, 921
MslI	CAYNNNNRTG	4 cut(s)	911, 1219, 1422, 1506
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	5 cut(s)	303, 434, 561, 581, 1252
MspR9I	CCNGG	5 cut(s)	101, 1626, 1913, 1925, 2201
Mva1269I	GAATGC	2 cut(s)	2035, 2335
MvaI	CCWGG	5 cut(s)	101, 1626, 1913, 1925, 2201
MvnI	CGCG	2 cut(s)	1735, 1737
MwoI	GCNNNNNNNGC	8 cut(s)	370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
NaeI	GCCGGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	2292
NcoI	CCATGG	2 cut(s)	707, 2295
NdeI	CATATG	3 cut(s)	44, 1216, 1989
NgoMIV	GCCGGC	1 cut(s)	302
NheI	GCTAGC	1 cut(s)	2333
NlaIII	CATG	8 cut(s)	55, 428, 570, 711, 868, 1505, 1961, 2299
NlaIV	GGNNCC	9 cut(s)	640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
NmuCI	GTSAC	1 cut(s)	1322
NsbI	TGCGCA	1 cut(s)	628
NspI	RCATGY	1 cut(s)	1961
NspV	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
PaeI	GCATGC	1 cut(s)	1961
PaeR7I	CTCGAG	1 cut(s)	890
PagI	TCATGA	1 cut(s)	1501
PaqCI	CACCTGC	1 cut(s)	1807
PauI	GCGCGC	2 cut(s)	1733, 1735
PciSI	GCTCTTC	2 cut(s)	582, 2052
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 1264
PctI	GAATGC	2 cut(s)	2035, 2335
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	1637, 2116
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	469
PleI	GAGTC	3 cut(s)	940, 1570, 1826
PluTI	GGCGCC	1 cut(s)	2295
PmaCI	CACGTG	2 cut(s)	2234, 2252
PmlI	CACGTG	2 cut(s)	2234, 2252
PpsI	GAGTC	3 cut(s)	940, 1570, 1826
Ppu21I	YACGTR	3 cut(s)	349, 2234, 2252
PpuMI	RGGWCCY	1 cut(s)	2389
PsiI	TTATAA	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	2389
Psp6I	CCWGG	5 cut(s)	99, 1624, 1911, 1923, 2199
PspCI	CACGTG	2 cut(s)	2234, 2252
PspEI	GGTNACC	1 cut(s)	1861
PspFI	CCCAGC	6 cut(s)	462, 524, 659, 1674, 1692, 1786
PspGI	CCWGG	5 cut(s)	99, 1624, 1911, 1923, 2199
PspN4I	GGNNCC	9 cut(s)	640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
PspPI	GGNCC	4 cut(s)	570, 737, 2179, 2389
PspPPI	RGGWCCY	1 cut(s)	2389
PstI	CTGCAG	1 cut(s)	786
PsuI	RGATCY	5 cut(s)	164, 188, 284, 1349, 1927
PsyI	GACNNNGTC	1 cut(s)	31
PteI	GCGCGC	2 cut(s)	1733, 1735
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	7 cut(s)	41, 491, 749, 1135, 1769, 2147, 2411
RsaNI	GTAC	7 cut(s)	40, 490, 748, 1134, 1768, 2146, 2410
RseI	CAYNNNNRTG	4 cut(s)	911, 1219, 1422, 1506
SalI	GTCGAC	2 cut(s)	1630, 1824
SapI	GCTCTTC	2 cut(s)	582, 2052
SaqAI	TTAA	2 cut(s)	503, 921
Sau96I	GGNCC	4 cut(s)	570, 737, 2179, 2389
SchI	GAGTC	3 cut(s)	941, 1571, 1826
ScrFI	CCNGG	5 cut(s)	101, 1626, 1913, 1925, 2201
SduI	GDGCHC	3 cut(s)	641, 2346, 2487
SfaNI	GCATC	7 cut(s)	999, 1264, 1376, 1652, 1799, 1968, 2482
SfcI	CTRYAG	2 cut(s)	782, 1773
SfoI	GGCGCC	1 cut(s)	2293
Sfr274I	CTCGAG	1 cut(s)	890
SfuI	TTCGAA	4 cut(s)	1032, 1046, 1535, 1577
SinI	GGWCC	2 cut(s)	2179, 2389
SlaI	CTCGAG	1 cut(s)	890
SmiMI	CAYNNNNRTG	4 cut(s)	911, 1219, 1422, 1506
SmlI	CTYRAG	3 cut(s)	890, 1962, 2486
SmoI	CTYRAG	3 cut(s)	890, 1962, 2486
SpeI	ACTAGT	1 cut(s)	853
SphI	GCATGC	1 cut(s)	1961
Sse9I	AATT	8 cut(s)	437, 500, 766, 923, 1376, 1406, 1553, 2080
SspDI	GGCGCC	1 cut(s)	2291
SspI	AATATT	2 cut(s)	1037, 1899
SspMI	CTAG	7 cut(s)	854, 1059, 2054, 2277, 2324, 2334, 2363
StyD4I	CCNGG	5 cut(s)	99, 1624, 1911, 1923, 2199
StyI	CCWWGG	5 cut(s)	339, 707, 1518, 2295, 2323
TaaI	ACNGT	7 cut(s)	87, 95, 489, 747, 1603, 1774, 1856
TaiI	ACGT	7 cut(s)	255, 351, 690, 2176, 2236, 2254, 2343
TaqII	GACCGA	2 cut(s)	131, 928
TasI	AATT	8 cut(s)	437, 500, 766, 923, 1376, 1406, 1553, 2080
TatI	WGTACW	2 cut(s)	39, 1767
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	1637, 2116
Tru1I	TTAA	2 cut(s)	503, 921
Tru9I	TTAA	2 cut(s)	503, 921
TscAI	CASTG	5 cut(s)	92, 100, 1161, 1376, 1777
TseFI	GTSAC	1 cut(s)	1322
Tsp45I	GTSAC	1 cut(s)	1322
TspDTI	ATGAA	6 cut(s)	370, 729, 881, 1566, 2006, 2493
TspGWI	ACGGA	1 cut(s)	1094
TspRI	CASTG	5 cut(s)	92, 100, 1161, 1376, 1777
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	469
VneI	GTGCAC	1 cut(s)	2342
VpaK11BI	GGWCC	2 cut(s)	2179, 2389
XapI	RAATTY	4 cut(s)	437, 923, 1376, 2080
XceI	RCATGY	1 cut(s)	1961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1450
XhoI	CTCGAG	1 cut(s)	890
XmaJI	CCTAGG	1 cut(s)	2323
XmiI	GTMKAC	3 cut(s)	345, 1631, 1825
XspI	CTAG	7 cut(s)	854, 1059, 2054, 2277, 2324, 2334, 2363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.