Rmu_sc0001308.1_g000032

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001308.1
Physical Location & Seq
Reverse (-)
105599 .. 108048
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001308.1_g000032.1.cds

Sequence Viewer

Length: 1464 bp
atggaggctgaggcggattgggtctcgaccaagtcgctgtatatatgtagcatggagatgtatagggacgagagtgtgtttacacagtgttacagtatccaggccatcgacttgaccgacttgctctccttttccgatactccgattaccatctctttctccagatctccaccaacgaaagctatgggatctccaccaaccaaagtccaagacgatatcctgcgagaagttgattttcttcaaggcaacgacgttccctacgacatgggtttcggtgtgtttggatctcagattgttttagccggcggacttcaacttccacaacgacatcggacgacttccaaggtctacgtgttggacaccttgcgagataagcccaagttcgtcaaacgcaaagccaacaaacccaaacgtcgtgatcatcgaattccggaatttcaatcaccaaaacgtcttccccagctgatggagatcgagggtaaactgtacgctctcgacttacggcctcaacaaggcttccccagctcctcgtcctttgaggtatttgacccccaaaccggatcgtgggccgctcttccggatcatcctcccccgattatccaatatcgtggtcccctctcttgtgcagttgtgggcaccaaattcttgatctctgcctgcgatactccggtctactgctttgacgtggcggagcctacccgaccatggaatgaactctgtgttcgttatgaccgccacaaattgtacaattatattgaccccagagcccttccctttctgcaggttttggttttggacttggaggaggaaaatcataagatattattttcctcctgtgggaacgatatactagtcttccacatgaacctgtccaatgatctcgctctcgagcttatagcaaccatagaggtggatattaattttgatgactgctcagtcagcttcatccatcttggaggtcaaaaagtatgctttgtgttcttggattggtggatttttgataagatgcgtggggttttcttcacattcgaatattccttttcgaaatctgctgctagtcctgacactcataccagcagttgtggtgatgatccatatttccgtgtgttttacccctccaactcgaaaggtagatccttttctgccaaaacactgggttggcgcacctttgaataccactactggtctgaggaagcttctcccatatctacagacgtgtgcggttcagctgtgcttccactccatcaccggcatcgtgaggagcgtgcaatctgcaaaagctgcggacgctactttcccgatatagaactcttcaatcgtcacttatctatcaatccttgttgcagatctgagcagcgactcatccagtgcaaattctgcggttgctacttttccaagcaagaattgtttgctcacttcagtaccagtgtgagttgtaaatcaaaatttacaggtaacatctga

Protein Analysis

487

Amino Acids

55.72

Weight (kDa)

6.28

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 572
AccI GTMKAC 2 cut(s) 348, 672
AccIII TCCGGA 2 cut(s) 430, 577
AciI CCGC 8 cut(s) 14, 306, 570, 689, 733, 1221, 1284, 1380
AclWI GGATC 6 cut(s) 196, 292, 568, 588, 1085, 1128
AcsI RAATTY 5 cut(s) 426, 434, 641, 1373, 1445
AcuI CTGAAG 1 cut(s) 1402
AfaI GTAC 3 cut(s) 488, 746, 1423
AfiI CCNNNNNNNGG 6 cut(s) 466, 512, 557, 564, 705, 837
AflIII ACRYGT 2 cut(s) 351, 1215
AgsI TTSAA 5 cut(s) 242, 314, 440, 1172, 1315
AhlI ACTAGT 1 cut(s) 850
AjiI CACGTC 2 cut(s) 685, 1216
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 8 cut(s) 182, 463, 525, 892, 942, 1196, 1229, 1281
AluI AGCT 8 cut(s) 182, 463, 525, 892, 942, 1196, 1229, 1281
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 6 cut(s) 196, 292, 568, 588, 1085, 1128
Ama87I CYCGRG 1 cut(s) 887
Aor13HI TCCGGA 2 cut(s) 430, 577
AoxI GGCC 3 cut(s) 102, 503, 567
ApeKI GCWGC 3 cut(s) 1052, 1281, 1354
ApoI RAATTY 5 cut(s) 426, 434, 641, 1373, 1445
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 1 cut(s) 918
AspLEI GCGC 1 cut(s) 1164
AspS9I GGNCC 2 cut(s) 567, 611
AsuHPI GGTGA 3 cut(s) 435, 1097, 1238
AsuII TTCGAA 2 cut(s) 1029, 1043
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 638
BaeI ACNNNNGTAYC 4 cut(s) 654, 687, 1405, 1438
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 2 cut(s) 446, 847
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 1039, 1268, 1366
BccI CCATC 5 cut(s) 113, 158, 460, 957, 1251
BceAI ACGGC 1 cut(s) 518
BciT130I CCWGG 1 cut(s) 101
BciVI GTATCC 1 cut(s) 107
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 28
BcuI ACTAGT 1 cut(s) 850
BfaI CTAG 2 cut(s) 851, 1056
BfmI CTRYAG 2 cut(s) 779, 1209
BfuAI ACCTGC 1 cut(s) 772
BfuI GTATCC 1 cut(s) 107
BglII AGATCT 2 cut(s) 164, 1346
BisI GCNGC 4 cut(s) 570, 1053, 1282, 1355
BlsI GCNGC 4 cut(s) 571, 1054, 1283, 1356
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 2 cut(s) 685, 1216
BmgT120I GGNCC 2 cut(s) 567, 611
BmiI GGNNCC 3 cut(s) 613, 637, 693
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 1163
BmsI GCATC 2 cut(s) 996, 1261
BmuI ACTGGG 1 cut(s) 1163
BpiI GAAGAC 2 cut(s) 446, 847
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 2 cut(s) 1029, 1043
BsaAI YACGTR 1 cut(s) 352
BsaBI GATNNNNATC 2 cut(s) 149, 470
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 342, 704
BsaWI WCCGGW 4 cut(s) 430, 557, 577, 667
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 6 cut(s) 466, 512, 557, 564, 705, 837
Bse118I RCCGGY 2 cut(s) 302, 1248
Bse1I ACTGG 4 cut(s) 1158, 1187, 1366, 1425
Bse8I GATNNNNATC 2 cut(s) 149, 470
BseAI TCCGGA 2 cut(s) 430, 577
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 342, 704
BseGI GGATG 3 cut(s) 583, 945, 1362
BseJI GATNNNNATC 2 cut(s) 149, 470
BseLI CCNNNNNNNGG 6 cut(s) 466, 512, 557, 564, 705, 837
BseMII CTCAG 4 cut(s) 302, 948, 1179, 1341
BseNI ACTGG 4 cut(s) 1158, 1187, 1366, 1425
BseRI GAGGAG 3 cut(s) 517, 818, 1274
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 1039, 1268, 1366
BseYI CCCAGC 2 cut(s) 459, 521
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 3 cut(s) 104, 505, 569
BshNI GGYRCC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 6 cut(s) 303, 431, 558, 578, 668, 1249
BslFI GGGAC 2 cut(s) 80, 597
BslI CCNNNNNNNGG 6 cut(s) 466, 512, 557, 564, 705, 837
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 80, 597
BsnI GGCC 3 cut(s) 104, 505, 569
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 887
Bsp119I TTCGAA 2 cut(s) 1029, 1043
Bsp1286I GDGCHC 2 cut(s) 638, 769
Bsp13I TCCGGA 2 cut(s) 430, 577
Bsp1407I TGTACA 1 cut(s) 744
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 8 cut(s) 14, 306, 570, 689, 733, 1221, 1284, 1380
BspANI GGCC 3 cut(s) 104, 505, 569
BspCNI CTCAG 4 cut(s) 301, 947, 1180, 1342
BspEI TCCGGA 2 cut(s) 430, 577
BspLI GGNNCC 3 cut(s) 613, 637, 693
BspMAI CTGCAG 1 cut(s) 783
BspMI ACCTGC 1 cut(s) 772
BspPI GGATC 6 cut(s) 196, 292, 568, 588, 1085, 1128
BspQI GCTCTTC 1 cut(s) 579
BspT104I TTCGAA 2 cut(s) 1029, 1043
BspT107I GGYRCC 1 cut(s) 635
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 572
BsrFI RCCGGY 2 cut(s) 302, 1248
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 4 cut(s) 1158, 1187, 1366, 1425
BssAI RCCGGY 2 cut(s) 302, 1248
BssECI CCNNGG 2 cut(s) 342, 704
BssT1I CCWWGG 2 cut(s) 342, 704
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 87, 95, 486
Bst6I CTCTTC 2 cut(s) 579, 1316
BstAPI GCANNNNNTGC 2 cut(s) 1281, 1377
BstAUI TGTACA 1 cut(s) 744
BstBAI YACGTR 1 cut(s) 352
BstBI TTCGAA 2 cut(s) 1029, 1043
BstC8I GCNNGC 3 cut(s) 304, 658, 1266
BstDEI CTNAG 5 cut(s) 9, 288, 934, 1188, 1350
BstDSI CCRYGG 1 cut(s) 704
BstENI CCTNNNNNAGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 583, 945, 1362
BstHHI GCGC 1 cut(s) 1164
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 6 cut(s) 373, 522, 939, 1281, 1287, 1377
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 779, 1209
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 1039, 1268, 1366
BstV2I GAAGAC 2 cut(s) 446, 847
BstX2I RGATCY 5 cut(s) 164, 188, 284, 1133, 1346
BstXI CCANNNNNNTGG 3 cut(s) 608, 910, 1153
BstYI RGATCY 5 cut(s) 164, 188, 284, 1133, 1346
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 104, 505, 569
BtgI CCRYGG 1 cut(s) 704
BtrI CACGTC 2 cut(s) 685, 1216
BtsCI GGATG 3 cut(s) 583, 945, 1362
BtsIMutI CAGTG 4 cut(s) 92, 1151, 1373, 1432
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 3 cut(s) 304, 658, 1266
CfoI GCGC 1 cut(s) 1164
Cfr10I RCCGGY 2 cut(s) 302, 1248
Cfr13I GGNCC 2 cut(s) 567, 611
CseI GACGC 1 cut(s) 1296
Csp6I GTAC 3 cut(s) 487, 745, 1422
CviAII CATG 4 cut(s) 52, 265, 705, 862
CviQI GTAC 3 cut(s) 487, 745, 1422
DdeI CTNAG 5 cut(s) 9, 288, 934, 1188, 1350
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
Eam1104I CTCTTC 2 cut(s) 579, 1316
EarI CTCTTC 2 cut(s) 579, 1316
EciI GGCGGA 3 cut(s) 29, 321, 704
Eco130I CCWWGG 2 cut(s) 342, 704
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 28
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 1402
Eco88I CYCGRG 1 cut(s) 887
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 342, 704
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 2 cut(s) 342, 704
FaeI CATG 4 cut(s) 55, 268, 708, 865
FaqI GGGAC 2 cut(s) 80, 597
FatI CATG 4 cut(s) 51, 264, 704, 861
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 2 cut(s) 348, 672
Fnu4HI GCNGC 4 cut(s) 570, 1053, 1282, 1355
FokI GGATG 3 cut(s) 570, 932, 1349
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 4 cut(s) 570, 1053, 1282, 1355
FspBI CTAG 2 cut(s) 851, 1056
GlaI GCGC 1 cut(s) 1163
GluI GCNGC 4 cut(s) 570, 1053, 1282, 1355
GsaI CCCAGC 2 cut(s) 463, 525
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 104, 505, 569
HapII CCGG 6 cut(s) 303, 431, 558, 578, 668, 1249
HgaI GACGC 1 cut(s) 1296
HhaI GCGC 1 cut(s) 1164
Hin1II CATG 4 cut(s) 55, 268, 708, 865
Hin6I GCGC 1 cut(s) 1162
HinP1I GCGC 1 cut(s) 1162
HindIII AAGCTT 1 cut(s) 1194
HinfI GANTC 1 cut(s) 1359
HpaII CCGG 6 cut(s) 303, 431, 558, 578, 668, 1249
HphI GGTGA 3 cut(s) 435, 1097, 1238
Hpy166II GTNNAC 4 cut(s) 81, 349, 482, 673
Hpy188I TCNGA 7 cut(s) 136, 144, 291, 333, 1189, 1351, 1463
Hpy8I GTNNAC 4 cut(s) 81, 349, 482, 673
Hpy99I CGWCG 2 cut(s) 254, 417
HpyAV CCTTC 1 cut(s) 779
HpyCH4III ACNGT 3 cut(s) 87, 95, 486
HpyCH4IV ACGT 6 cut(s) 252, 351, 412, 451, 684, 1215
HpyCH4V TGCA 6 cut(s) 626, 781, 1268, 1275, 1344, 1371
HpyF10VI GCNNNNNNNGC 6 cut(s) 373, 522, 939, 1281, 1287, 1377
HpyF3I CTNAG 5 cut(s) 9, 288, 934, 1188, 1350
HpySE526I ACGT 6 cut(s) 252, 351, 412, 451, 684, 1215
Hsp92II CATG 4 cut(s) 55, 268, 708, 865
HspAI GCGC 1 cut(s) 1162
Kpn2I TCCGGA 2 cut(s) 430, 577
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 418
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 3 cut(s) 530, 691, 1261
Lsp1109I GCAGC 3 cut(s) 1039, 1268, 1366
LweI GCATC 2 cut(s) 996, 1261
MaeI CTAG 2 cut(s) 851, 1056
MaeII ACGT 6 cut(s) 252, 351, 412, 451, 684, 1215
MaeIII GTNAC 3 cut(s) 89, 1319, 1454
MbiI CCGCTC 1 cut(s) 572
MboII GAAGA 6 cut(s) 230, 446, 566, 847, 1012, 1303
MflI RGATCY 5 cut(s) 164, 188, 284, 1133, 1346
MhlI GDGCHC 2 cut(s) 638, 769
MluCI AATT 9 cut(s) 426, 434, 641, 740, 748, 919, 1373, 1403, 1445
MlyI GAGTC 1 cut(s) 1353
MmeI TCCRAC 2 cut(s) 336, 1143
MroI TCCGGA 2 cut(s) 430, 577
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 2 cut(s) 56, 908
MspA1I CMGCKG 2 cut(s) 463, 1229
MspI CCGG 6 cut(s) 303, 431, 558, 578, 668, 1249
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 6 cut(s) 373, 522, 939, 1281, 1287, 1377
NaeI GCCGGC 1 cut(s) 304
NcoI CCATGG 1 cut(s) 704
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 55, 268, 708, 865
NlaIV GGNNCC 3 cut(s) 613, 637, 693
NmuCI GTSAC 1 cut(s) 1319
NspV TTCGAA 2 cut(s) 1029, 1043
PaeR7I CTCGAG 1 cut(s) 887
PciSI GCTCTTC 1 cut(s) 579
PcsI WCGNNNNNNNCGW 4 cut(s) 114, 258, 421, 1261
PdiI GCCGGC 1 cut(s) 304
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 4 cut(s) 571, 1054, 1283, 1356
PleI GAGTC 1 cut(s) 1353
PpsI GAGTC 1 cut(s) 1353
Ppu21I YACGTR 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 459, 521
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 613, 637, 693
PspPI GGNCC 2 cut(s) 567, 611
PstI CTGCAG 1 cut(s) 783
PsuI RGATCY 5 cut(s) 164, 188, 284, 1133, 1346
PsyI GACNNNGTC 1 cut(s) 31
PvuII CAGCTG 2 cut(s) 463, 1229
RsaI GTAC 3 cut(s) 488, 746, 1423
RsaNI GTAC 3 cut(s) 487, 745, 1422
RseI CAYNNNNRTG 2 cut(s) 56, 908
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 4 cut(s) 570, 1053, 1282, 1355
Sau96I GGNCC 2 cut(s) 567, 611
SchI GAGTC 1 cut(s) 1353
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 638, 769
SfaNI GCATC 2 cut(s) 996, 1261
SfcI CTRYAG 2 cut(s) 779, 1209
Sfr274I CTCGAG 1 cut(s) 887
SfuI TTCGAA 2 cut(s) 1029, 1043
SinI GGWCC 1 cut(s) 611
SlaI CTCGAG 1 cut(s) 887
SmiMI CAYNNNNRTG 2 cut(s) 56, 908
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 850
Sse9I AATT 9 cut(s) 426, 434, 641, 740, 748, 919, 1373, 1403, 1445
SsiI CCGC 8 cut(s) 14, 306, 570, 689, 733, 1221, 1284, 1380
SspI AATATT 1 cut(s) 1034
SspMI CTAG 2 cut(s) 851, 1056
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 2 cut(s) 342, 704
TaaI ACNGT 3 cut(s) 87, 95, 486
TaiI ACGT 6 cut(s) 255, 354, 415, 454, 687, 1218
TaqI TCGA 9 cut(s) 26, 108, 424, 474, 495, 888, 1029, 1043, 1124
TaqII GACCGA 1 cut(s) 131
TasI AATT 9 cut(s) 426, 434, 641, 740, 748, 919, 1373, 1403, 1445
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 572
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 4 cut(s) 92, 1158, 1373, 1432
TseFI GTSAC 1 cut(s) 1319
TseI GCWGC 3 cut(s) 1052, 1281, 1354
Tsp45I GTSAC 1 cut(s) 1319
TspDTI ATGAA 3 cut(s) 726, 878, 934
TspGWI ACGGA 1 cut(s) 1091
TspRI CASTG 4 cut(s) 92, 1158, 1373, 1432
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 611
VspI ATTAAT 1 cut(s) 918
XagI CCTNNNNNAGG 1 cut(s) 510
XapI RAATTY 5 cut(s) 426, 434, 641, 1373, 1445
XhoI CTCGAG 1 cut(s) 887
XmiI GTMKAC 2 cut(s) 348, 672
XspI CTAG 2 cut(s) 851, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.