Rh1DG402400

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005924
Physical Location & Seq
Forward (+)
62216406 .. 62217290
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG402400.1

Sequence Viewer

Length: 885 bp
ATGGGGCGGAAGTCGAAGTCGAGATTTAGGGAGGCTGTTCATCTGGATAGGGGCGACAAGGAAGCCAAGGAGTCGCTGTACATGTGTAGCATGGAGAGATATAGGGACGAGAGAGTGTTTACACATTGTTACAGTATCCAGGCCATCAACTTGACCGACTTGCTCTCCTTTTCCGATACTCCGATTACCATCTCTTTCTCCAGATCTCCACCAACCAAAGCTATGGGATCTCCACCAACCAAAGTCCAAGACCATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGACATGGGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAACGACATCGGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATAAGCCCAAGTTCGTCAAACGCAAAGCCAACAAACCCAAAGCTCGTGATCATGGAATTCCGGAATTTCAATCACCAAAACGTCTTCCCCAGCTGATGGAGATCGAGGGTAAACTGTACGCTCTCGACTTACGGCCTCAAGGCTTCCCCAGCTCCTCGTCCTTTGAGGTATTTGACCCCCAAACCGGATCATGGGCCGCTCTTCCGGATCATCCTCCCCCGATTATCCAATGTCGTGGTCCCCTCTCTTGTGCAGTTGTGGGCACCAAATTCTTGATCTCTGCCTGCGATACTCCGGTCTACTGCTTTGACGTGGCGGAGCCTACCCGACCATGGAATGAACTCTGGGTTCGTCATGACCACCATAAACTGTACAATTATATTGACCCCAGAGCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGAAATAATAAGATATTATTTTCCTCCTGTGGGAACGATATACTAG

Protein Analysis

294

Amino Acids

33.64

Weight (kDa)

8.44

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 155 - 248 2.8e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 1 cut(s) 605
AccI GTMKAC 2 cut(s) 384, 705
AccIII TCCGGA 2 cut(s) 466, 610
AciI CCGC 4 cut(s) 7, 345, 603, 722
AclWI GGATC 4 cut(s) 235, 331, 601, 621
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 3 cut(s) 462, 470, 674
AfaI GTAC 3 cut(s) 80, 524, 779
AfiI CCNNNNNNNGG 5 cut(s) 502, 590, 597, 738, 869
AflIII ACRYGT 2 cut(s) 81, 387
AgsI TTSAA 3 cut(s) 281, 353, 476
AjiI CACGTC 1 cut(s) 718
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 221, 449, 499, 558
AluI AGCT 4 cut(s) 221, 449, 499, 558
AlwI GGATC 4 cut(s) 235, 331, 601, 621
Aor13HI TCCGGA 2 cut(s) 466, 610
AoxI GGCC 4 cut(s) 141, 339, 539, 600
ApoI RAATTY 3 cut(s) 462, 470, 674
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspS9I GGNCC 2 cut(s) 600, 644
AsuHPI GGTGA 1 cut(s) 471
AvaII GGWCC 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 671
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 802
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 482
BccI CCATC 3 cut(s) 152, 197, 496
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 454
BfaI CTAG 1 cut(s) 883
BfmI CTRYAG 1 cut(s) 812
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 203
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 644
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 2 cut(s) 600, 644
BmiI GGNNCC 3 cut(s) 646, 670, 726
BmrFI CCNGG 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 188, 506
BsaJI CCNNGG 3 cut(s) 66, 378, 737
BsaWI WCCGGW 4 cut(s) 466, 590, 610, 700
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 149, 179
Bsc4I CCNNNNNNNGG 5 cut(s) 502, 590, 597, 738, 869
Bse118I RCCGGY 1 cut(s) 341
Bse8I GATNNNNATC 2 cut(s) 188, 506
BseAI TCCGGA 2 cut(s) 466, 610
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 66, 378, 737
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 2 cut(s) 188, 506
BseLI CCNNNNNNNGG 5 cut(s) 502, 590, 597, 738, 869
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 550, 851
BseSI GKGCMC 1 cut(s) 671
BseYI CCCAGC 2 cut(s) 495, 554
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 4 cut(s) 143, 341, 541, 602
BshNI GGYRCC 1 cut(s) 668
BsiSI CCGG 5 cut(s) 342, 467, 591, 611, 701
BslFI GGGAC 2 cut(s) 119, 630
BslI CCNNNNNNNGG 5 cut(s) 502, 590, 597, 738, 869
BsmFI GGGAC 2 cut(s) 119, 630
BsnI GGCC 4 cut(s) 143, 341, 541, 602
Bsp1286I GDGCHC 2 cut(s) 671, 802
Bsp13I TCCGGA 2 cut(s) 466, 610
Bsp1407I TGTACA 2 cut(s) 78, 777
Bsp143I GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
Bsp19I CCATGG 1 cut(s) 737
BspACI CCGC 4 cut(s) 7, 345, 603, 722
BspANI GGCC 4 cut(s) 143, 341, 541, 602
BspCNI CTCAG 1 cut(s) 340
BspEI TCCGGA 2 cut(s) 466, 610
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 646, 670, 726
BspMAI CTGCAG 1 cut(s) 816
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 4 cut(s) 235, 331, 601, 621
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 668
BsrBI CCGCTC 1 cut(s) 605
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 2 cut(s) 78, 777
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 66, 378, 737
BssMI GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 3 cut(s) 66, 378, 737
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 134, 522, 777
Bst6I CTCTTC 1 cut(s) 612
BstAUI TGTACA 2 cut(s) 78, 777
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 343, 691
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 737
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 8 cut(s) 206, 230, 326, 457, 510, 596, 616, 684
BstMBI GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
BstMWI GCNNNNNNNGC 2 cut(s) 409, 555
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 812
BstSLI GKGCMC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 3 cut(s) 203, 227, 323
BstXI CCANNNNNNTGG 2 cut(s) 223, 641
BstYI RGATCY 3 cut(s) 203, 227, 323
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 4 cut(s) 143, 341, 541, 602
BtgI CCRYGG 1 cut(s) 737
BtrI CACGTC 1 cut(s) 718
BtsCI GGATG 1 cut(s) 616
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 343, 691
CciI TCATGA 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 600, 644
Csp6I GTAC 3 cut(s) 79, 523, 778
CviAII CATG 7 cut(s) 82, 91, 304, 458, 597, 738, 761
CviQI GTAC 3 cut(s) 79, 523, 778
DdeI CTNAG 1 cut(s) 327
DpnI GATC 8 cut(s) 205, 229, 325, 456, 509, 595, 615, 683
DpnII GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 3 cut(s) 22, 360, 737
Eco130I CCWWGG 3 cut(s) 66, 378, 737
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 3 cut(s) 66, 378, 737
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 3 cut(s) 66, 378, 737
FaeI CATG 7 cut(s) 85, 94, 307, 461, 600, 741, 764
FaqI GGGAC 2 cut(s) 119, 630
FatI CATG 7 cut(s) 81, 90, 303, 457, 596, 737, 760
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 2 cut(s) 384, 705
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 1 cut(s) 603
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 1 cut(s) 883
GluI GCNGC 1 cut(s) 603
GsaI CCCAGC 2 cut(s) 499, 558
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 4 cut(s) 143, 341, 541, 602
HapII CCGG 5 cut(s) 342, 467, 591, 611, 701
Hin1II CATG 7 cut(s) 85, 94, 307, 461, 600, 741, 764
HinfI GANTC 1 cut(s) 71
HpaII CCGG 5 cut(s) 342, 467, 591, 611, 701
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 4 cut(s) 120, 385, 518, 706
Hpy188I TCNGA 4 cut(s) 175, 183, 330, 372
Hpy188III TCNNGA 9 cut(s) 21, 44, 201, 452, 467, 530, 611, 679, 761
Hpy8I GTNNAC 4 cut(s) 120, 385, 518, 706
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 812
HpyCH4III ACNGT 3 cut(s) 134, 522, 777
HpyCH4IV ACGT 4 cut(s) 291, 387, 487, 717
HpyCH4V TGCA 2 cut(s) 659, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 555
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 4 cut(s) 291, 387, 487, 717
Hsp92II CATG 7 cut(s) 85, 94, 307, 461, 600, 741, 764
Kpn2I TCCGGA 2 cut(s) 466, 610
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 563, 724
MaeI CTAG 1 cut(s) 883
MaeII ACGT 4 cut(s) 291, 387, 487, 717
MaeIII GTNAC 1 cut(s) 128
MalI GATC 8 cut(s) 205, 229, 325, 456, 509, 595, 615, 683
MbiI CCGCTC 1 cut(s) 605
MboI GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
MboII GAAGA 3 cut(s) 269, 482, 599
MflI RGATCY 3 cut(s) 203, 227, 323
MhlI GDGCHC 2 cut(s) 671, 802
MluCI AATT 4 cut(s) 462, 470, 674, 781
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 372
MroI TCCGGA 2 cut(s) 466, 610
MroNI GCCGGC 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 5 cut(s) 342, 467, 591, 611, 701
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 409, 555
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 737
NdeII GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 7 cut(s) 85, 94, 307, 461, 600, 741, 764
NlaIV GGNNCC 3 cut(s) 646, 670, 726
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 760
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 388
PscI ACATGT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 2 cut(s) 495, 554
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 646, 670, 726
PspPI GGNCC 2 cut(s) 600, 644
PstI CTGCAG 1 cut(s) 816
PsuI RGATCY 3 cut(s) 203, 227, 323
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 3 cut(s) 80, 524, 779
RsaNI GTAC 3 cut(s) 79, 523, 778
SapI GCTCTTC 1 cut(s) 612
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 8 cut(s) 203, 227, 323, 454, 507, 593, 613, 681
Sau96I GGNCC 2 cut(s) 600, 644
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 671, 802
SfcI CTRYAG 1 cut(s) 812
SinI GGWCC 1 cut(s) 644
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 4 cut(s) 462, 470, 674, 781
SsiI CCGC 4 cut(s) 7, 345, 603, 722
SspMI CTAG 1 cut(s) 883
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 66, 378, 737
TaaI ACNGT 3 cut(s) 134, 522, 777
TaiI ACGT 4 cut(s) 294, 390, 490, 720
TaqI TCGA 4 cut(s) 14, 20, 510, 531
TaqII GACCGA 1 cut(s) 170
TasI AATT 4 cut(s) 462, 470, 674, 781
TatI WGTACW 2 cut(s) 78, 777
TauI GCSGC 1 cut(s) 605
TspDTI ATGAA 2 cut(s) 29, 759
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 3 cut(s) 462, 470, 674
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 2 cut(s) 384, 705
XspI CTAG 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.