Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001308.1

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Reverse (-)

115080 .. 115712

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001308.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtgcattactgttttaacagttttggtgtgtgtttggatctcagattgttttagccggcggactagaagtctagaacgtccacatcgacatccgacttccaaggtctacgggttggacaccttgcgaggtaagcccaagttcatcaaacgcaaagccaacaaacccaaagctcgtgataatggaattccagaatttcaatcaccaaaacgtcttccccagctgatggagatcgagggtaaactgtacgctctcgacttacagcctgaaaaagacttccccagctcctcgtcctcgtcctttgaggtatttgacccccaaactggatcatgggccgctcttcaggatcatcctccccctattatcgaatgcggtgataccctctcttgtgtagttgtcagcaccaagatcttgatctctggcttggatactccggtctactgctttgacgtagcggagcctagccgaccatggaatgaactctcggttcatcatgaccgcgatcaacaactgtcaaattctgatgatgagtccggtgcccttccctttttggatgttttgtttttggacttggaggaagataatggtaagatattgtttttctccagtggtgggaacatgtcttttacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.57

Weight (kDa)

5.38

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	2 cut(s)	108, 438
AccII	CGCG	1 cut(s)	501
AciI	CCGC	5 cut(s)	61, 336, 372, 455, 499
AclWI	GGATC	3 cut(s)	47, 334, 354
AcsI	RAATTY	3 cut(s)	186, 194, 517
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	226, 323, 612
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	200
AhdI	GACNNNNNGTC	1 cut(s)	69
AluBI	AGCT	3 cut(s)	173, 223, 285
AluI	AGCT	3 cut(s)	173, 223, 285
AlwI	GGATC	3 cut(s)	47, 334, 354
AoxI	GGCC	1 cut(s)	333
ApoI	RAATTY	3 cut(s)	186, 194, 517
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	195, 386
BaeGI	GKGCMC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanI	GGYRCC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	206
BccI	CCATC	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	66, 74, 462
BfuI	GTATCC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	459, 538
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	589
BsaBI	GATNNNNATC	2 cut(s)	230, 413
BsaJI	CCNNGG	2 cut(s)	102, 470
BsaWI	WCCGGW	2 cut(s)	433, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 323, 612
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	328, 606
Bse8I	GATNNNNATC	2 cut(s)	230, 413
BseDI	CCNNGG	2 cut(s)	102, 470
BseGI	GGATG	3 cut(s)	91, 349, 559
BseJI	GATNNNNATC	2 cut(s)	230, 413
BseLI	CCNNNNNNNGG	3 cut(s)	226, 323, 612
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	328, 606
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	541
BseYI	CCCAGC	2 cut(s)	219, 281
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	58, 434, 534
BslI	CCNNNNNNNGG	3 cut(s)	226, 323, 612
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	5 cut(s)	61, 336, 372, 455, 499
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	459, 538
BspPI	GGATC	3 cut(s)	47, 334, 354
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	328, 606
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	102, 470
BssMI	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	102, 470
Bst2BI	CACGAG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	13, 22, 246, 513
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	91, 349, 559
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	7 cut(s)	42, 234, 329, 349, 411, 417, 505
BstMBI	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	541
BstUI	CGCG	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	39, 408
BstYI	RGATCY	2 cut(s)	39, 408
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	91, 349, 559
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	5 cut(s)	330, 471, 494, 619, 630
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	7 cut(s)	41, 233, 328, 348, 410, 416, 504
DpnII	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	102, 470
Eco57I	CTGAAG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	102, 470
ErhI	CCWWGG	2 cut(s)	102, 470
FaeI	CATG	5 cut(s)	333, 474, 497, 622, 633
FaiI	YATR	5 cut(s)	331, 472, 495, 620, 631
FatI	CATG	5 cut(s)	329, 470, 493, 618, 629
FblI	GTMKAC	2 cut(s)	108, 438
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	3 cut(s)	78, 336, 566
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	3 cut(s)	66, 74, 462
GluI	GCNGC	1 cut(s)	336
GsaI	CCCAGC	2 cut(s)	223, 285
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	3 cut(s)	58, 434, 534
Hin1II	CATG	5 cut(s)	333, 474, 497, 622, 633
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	3 cut(s)	58, 434, 534
HphI	GGTGA	2 cut(s)	195, 386
Hpy166II	GTNNAC	4 cut(s)	83, 109, 242, 439
Hpy188I	TCNGA	3 cut(s)	46, 96, 523
Hpy188III	TCNNGA	7 cut(s)	74, 176, 191, 254, 344, 412, 494
Hpy8I	GTNNAC	4 cut(s)	83, 109, 242, 439
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	4 cut(s)	13, 22, 246, 513
HpyCH4IV	ACGT	3 cut(s)	79, 211, 450
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	3 cut(s)	79, 211, 450
Hsp92II	CATG	5 cut(s)	333, 474, 497, 622, 633
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Kzo9I	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	290, 457
MaeI	CTAG	3 cut(s)	66, 74, 462
MaeII	ACGT	3 cut(s)	79, 211, 450
MalI	GATC	7 cut(s)	41, 233, 328, 348, 410, 416, 504
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
MboII	GAAGA	3 cut(s)	206, 332, 590
MflI	RGATCY	2 cut(s)	39, 408
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	3 cut(s)	186, 194, 517
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	2 cut(s)	96, 119
MnlI	CCTC	8 cut(s)	122, 229, 298, 298, 304, 363, 392, 568
MroNI	GCCGGC	1 cut(s)	57
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	3 cut(s)	58, 434, 534
Mva1269I	GAATGC	1 cut(s)	374
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	133
NaeI	GCCGGC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	5 cut(s)	333, 474, 497, 622, 633
NlaIV	GGNNCC	2 cut(s)	459, 538
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PctI	GAATGC	1 cut(s)	374
PdiI	GCCGGC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PscI	ACATGT	1 cut(s)	618
PspFI	CCCAGC	2 cut(s)	219, 281
PspN4I	GGNNCC	2 cut(s)	459, 538
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	2 cut(s)	39, 408
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	7 cut(s)	39, 231, 326, 346, 408, 414, 502
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	541
Sse9I	AATT	3 cut(s)	186, 194, 517
SsiI	CCGC	5 cut(s)	61, 336, 372, 455, 499
SspMI	CTAG	3 cut(s)	66, 74, 462
StyI	CCWWGG	2 cut(s)	102, 470
TaaI	ACNGT	4 cut(s)	13, 22, 246, 513
TaiI	ACGT	3 cut(s)	82, 214, 453
TaqI	TCGA	4 cut(s)	88, 234, 255, 366
TasI	AATT	3 cut(s)	186, 194, 517
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	133, 479, 492
TspRI	CASTG	1 cut(s)	613
Van91I	CCANNNNNTGG	1 cut(s)	226
XapI	RAATTY	3 cut(s)	186, 194, 517
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	622
XmiI	GTMKAC	2 cut(s)	108, 438
XspI	CTAG	3 cut(s)	66, 74, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.