Rh1AG410200

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005924
Physical Location & Seq
Reverse (-)
64176685 .. 64179156
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG410200.1

Sequence Viewer

Length: 1446 bp
ATGGAAGCCAAGGAGTCGCTGTACATATGTAGCATGGAGAGATATAAGGACGAGAGCGTGCTTACACAGTGTTACAGTGTCCAGGCCATCAACTTGACCGACTTGCTCTCCTTTTCCGATACTCCGATTACCATCTCTTTCTCCAGATCTCCACCAACCAAAGCTATGGGATCTCCACCAACCAAAGTCCAAGACCATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGAGATGGGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAAATACATCCGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATAAGCCCAAGTTCATCAAACGCAAAGCCAACAAACCTAAAGCTAAAGCTCGTGATCATGGTTTTCCGGAATTTCAATCACCAAAATATCTTCCCCAGCTGATGGAGATCGAGGGTAAACTGTACGCTGTCGAATTAAAGCCTGAAGAAGACTTCCCCAGCTCCTCGTCCTTTGAGGTATTTGACCCCCAAACCGGATCATGGGCCGCTCTTCCGGATCATCCTCCCCCGATTATCGAATGTGGTGGTCTCCTCTCCTGCGCAGTTGTGGGCACCAAGTTCTTGATCTCTGCTGGGGATACTCCGACCTACTGCTTTGACGTGGCGGAGCCTACCCGACCATGGAATGAACTTCGTCTTCGTAATGACGGCCCTAAACTGTACGATTATAATGACCCCAATTCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGATAATCATAAGATATTATTTTCCTCCTCTGGGAACGATATACTAGTTTTCCACATGAACCTGTCCGATGATCTGGCTCTCGAGCTTATAGCAACCATACAGGTGGATATTAAATTTGATGAGTCCTCGGTCAGTTTCACCCATCTTGGAGGTCAAAAAGTATGCTTTTTGTTCTTGGATTGGTGGATTTTTGATAAGATGCGTGGGGTTTTCTTCACATTCGAATATTCCTTTTCGAAATCTGCTGCTAGTCCTGACACTCATACCAGCAGTTGTGGTGATGATCCATATTTCCGTGTGTTTTACCCCTCCAACGCGAATGGTAGATCCTTTTCTGCCAAAACACTGGGTTGGCGCACCTTTGAATACCACTACTGGTCTGAGGAAGCTTCTCCCATATCTACAGTTGTGTGCGGTTTAGCTGTGCTTCCACTCCATCACCGGCATCGTGAGGGGCGTATCTGCAAAAGCTGCCAATGCTACTTTCCCGATATAGAACTCTTCAATCTTCACTTATCTGTCAATCCTTGTTGCAGATCTGAGCAGCAACTCATCCAGTGCAAATTCTGCAGATGCTACTTTTCCAAGCAAGAATTGTTTGCTCACTTCAGTACCAGTGCGAGTTGTAAATCAAAATTTACAGGTAACATCTGA

Protein Analysis

481

Amino Acids

54.44

Weight (kDa)

5.64

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 138 - 232 8e-11 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
Acc16I TGCGCA 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 1109
AccIII TCCGGA 2 cut(s) 415, 562
AciI CCGC 4 cut(s) 288, 555, 674, 1206
AclWI GGATC 6 cut(s) 178, 274, 553, 573, 1070, 1113
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 4 cut(s) 419, 905, 1355, 1427
AcuI CTGAAG 2 cut(s) 513, 1384
AfaI GTAC 4 cut(s) 23, 473, 731, 1405
AfiI CCNNNNNNNGG 5 cut(s) 451, 542, 549, 690, 822
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 5 cut(s) 224, 296, 425, 1157, 1297
AhlI ACTAGT 1 cut(s) 835
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 1260, 1292
AluBI AGCT 9 cut(s) 164, 392, 398, 448, 510, 877, 1181, 1214, 1263
AluI AGCT 9 cut(s) 164, 392, 398, 448, 510, 877, 1181, 1214, 1263
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 6 cut(s) 178, 274, 553, 573, 1070, 1113
Ama87I CYCGRG 1 cut(s) 872
Aor13HI TCCGGA 2 cut(s) 415, 562
AoxI GGCC 4 cut(s) 84, 282, 552, 718
ApeKI GCWGC 3 cut(s) 1037, 1263, 1336
ApoI RAATTY 4 cut(s) 419, 905, 1355, 1427
AspLEI GCGC 2 cut(s) 611, 1149
AspS9I GGNCC 2 cut(s) 552, 719
AsuHPI GGTGA 4 cut(s) 420, 922, 1082, 1223
AsuII TTCGAA 2 cut(s) 1014, 1028
AvaI CYCGRG 1 cut(s) 872
BaeGI GKGCMC 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 1387, 1420
BanI GGYRCC 1 cut(s) 620
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 2 cut(s) 504, 698
BbvI GCAGC 3 cut(s) 1024, 1250, 1348
BccI CCATC 6 cut(s) 95, 140, 241, 445, 942, 1236
BceAI ACGGC 1 cut(s) 733
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 602
BcuI ACTAGT 1 cut(s) 835
BfaI CTAG 2 cut(s) 836, 1041
BfmI CTRYAG 3 cut(s) 764, 1194, 1360
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 640
BglII AGATCT 2 cut(s) 146, 1328
BisI GCNGC 4 cut(s) 555, 1038, 1264, 1337
BlsI GCNGC 4 cut(s) 556, 1039, 1265, 1338
Bme1390I CCNGG 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 872
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 552, 719
BmiI GGNNCC 2 cut(s) 622, 678
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 1148
BmsI GCATC 3 cut(s) 981, 1246, 1355
BmuI ACTGGG 1 cut(s) 1148
BpiI GAAGAC 2 cut(s) 504, 698
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 2 cut(s) 1014, 1028
BsaAI YACGTR 1 cut(s) 331
BsaBI GATNNNNATC 2 cut(s) 131, 455
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 9, 321, 689, 918
BsaWI WCCGGW 3 cut(s) 415, 542, 562
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 92, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 451, 542, 549, 690, 822
Bse118I RCCGGY 2 cut(s) 284, 1233
Bse1I ACTGG 4 cut(s) 1143, 1172, 1348, 1407
Bse8I GATNNNNATC 2 cut(s) 131, 455
BseAI TCCGGA 2 cut(s) 415, 562
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 4 cut(s) 9, 321, 689, 918
BseGI GGATG 3 cut(s) 310, 568, 1344
BseJI GATNNNNATC 2 cut(s) 131, 455
BseLI CCNNNNNNNGG 5 cut(s) 451, 542, 549, 690, 822
BseMII CTCAG 3 cut(s) 284, 1164, 1323
BseNI ACTGG 4 cut(s) 1143, 1172, 1348, 1407
BseRI GAGGAG 4 cut(s) 502, 590, 803, 808
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 3 cut(s) 1024, 1250, 1348
BseYI CCCAGC 3 cut(s) 444, 506, 641
Bsh1236I CGCG 1 cut(s) 1109
BshFI GGCC 4 cut(s) 86, 284, 554, 720
BshNI GGYRCC 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 5 cut(s) 285, 416, 543, 563, 1234
BslI CCNNNNNNNGG 5 cut(s) 451, 542, 549, 690, 822
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 4 cut(s) 86, 284, 554, 720
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 872
Bsp119I TTCGAA 2 cut(s) 1014, 1028
Bsp1286I GDGCHC 1 cut(s) 623
Bsp13I TCCGGA 2 cut(s) 415, 562
Bsp1407I TGTACA 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 689
BspACI CCGC 4 cut(s) 288, 555, 674, 1206
BspANI GGCC 4 cut(s) 86, 284, 554, 720
BspCNI CTCAG 3 cut(s) 283, 1165, 1324
BspEI TCCGGA 2 cut(s) 415, 562
BspFNI CGCG 1 cut(s) 1109
BspLI GGNNCC 2 cut(s) 622, 678
BspMAI CTGCAG 2 cut(s) 768, 1364
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 6 cut(s) 178, 274, 553, 573, 1070, 1113
BspQI GCTCTTC 1 cut(s) 564
BspT104I TTCGAA 2 cut(s) 1014, 1028
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 557
BsrFI RCCGGY 2 cut(s) 284, 1233
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 4 cut(s) 1143, 1172, 1348, 1407
BssAI RCCGGY 2 cut(s) 284, 1233
BssECI CCNNGG 4 cut(s) 9, 321, 689, 918
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 3 cut(s) 9, 321, 689
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 5 cut(s) 69, 77, 471, 729, 1198
Bst6I CTCTTC 2 cut(s) 564, 1298
BstAPI GCANNNNNTGC 2 cut(s) 1263, 1359
BstAUI TGTACA 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 331
BstBI TTCGAA 2 cut(s) 1014, 1028
BstC8I GCNNGC 2 cut(s) 59, 286
BstDEI CTNAG 3 cut(s) 270, 1173, 1332
BstDSI CCRYGG 1 cut(s) 689
BstF5I GGATG 3 cut(s) 310, 568, 1344
BstFNI CGCG 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 611, 1149
BstMAI GTCTC 1 cut(s) 602
BstMWI GCNNNNNNNGC 4 cut(s) 352, 1263, 1269, 1359
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 3 cut(s) 764, 1194, 1360
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 1 cut(s) 1109
BstV1I GCAGC 3 cut(s) 1024, 1250, 1348
BstV2I GAAGAC 2 cut(s) 504, 698
BstX2I RGATCY 5 cut(s) 146, 170, 266, 1118, 1328
BstXI CCANNNNNNTGG 3 cut(s) 166, 895, 1138
BstYI RGATCY 5 cut(s) 146, 170, 266, 1118, 1328
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 4 cut(s) 86, 284, 554, 720
BtgI CCRYGG 1 cut(s) 689
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 3 cut(s) 310, 568, 1344
BtsIMutI CAGTG 5 cut(s) 74, 82, 1136, 1355, 1414
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 2 cut(s) 59, 286
CfoI GCGC 2 cut(s) 611, 1149
Cfr10I RCCGGY 2 cut(s) 284, 1233
Cfr13I GGNCC 2 cut(s) 552, 719
Csp6I GTAC 4 cut(s) 22, 472, 730, 1404
CviAII CATG 5 cut(s) 34, 407, 549, 690, 847
CviQI GTAC 4 cut(s) 22, 472, 730, 1404
DdeI CTNAG 3 cut(s) 270, 1173, 1332
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 564, 1298
EarI CTCTTC 2 cut(s) 564, 1298
EciI GGCGGA 2 cut(s) 303, 689
Eco130I CCWWGG 3 cut(s) 9, 321, 689
Eco31I GGTCTC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 513, 1384
Eco88I CYCGRG 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 3 cut(s) 9, 321, 689
ErhI CCWWGG 3 cut(s) 9, 321, 689
FaeI CATG 5 cut(s) 37, 410, 552, 693, 850
FatI CATG 5 cut(s) 33, 406, 548, 689, 846
FauNDI CATATG 1 cut(s) 26
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 555, 1038, 1264, 1337
FokI GGATG 3 cut(s) 297, 555, 1331
Fsp4HI GCNGC 4 cut(s) 555, 1038, 1264, 1337
FspBI CTAG 2 cut(s) 836, 1041
FspI TGCGCA 1 cut(s) 610
GlaI GCGC 2 cut(s) 610, 1148
GluI GCNGC 4 cut(s) 555, 1038, 1264, 1337
GsaI CCCAGC 3 cut(s) 448, 510, 645
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 4 cut(s) 86, 284, 554, 720
HapII CCGG 5 cut(s) 285, 416, 543, 563, 1234
HhaI GCGC 2 cut(s) 611, 1149
Hin1II CATG 5 cut(s) 37, 410, 552, 693, 850
Hin6I GCGC 2 cut(s) 609, 1147
HinP1I GCGC 2 cut(s) 609, 1147
HindIII AAGCTT 1 cut(s) 1179
HinfI GANTC 2 cut(s) 14, 914
HpaII CCGG 5 cut(s) 285, 416, 543, 563, 1234
HphI GGTGA 4 cut(s) 420, 922, 1082, 1223
Hpy166II GTNNAC 2 cut(s) 328, 467
Hpy188I TCNGA 9 cut(s) 118, 126, 273, 315, 654, 859, 1174, 1333, 1445
Hpy188III TCNNGA 9 cut(s) 144, 401, 416, 563, 631, 872, 1046, 1241, 1280
Hpy8I GTNNAC 2 cut(s) 328, 467
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 764
HpyCH4III ACNGT 5 cut(s) 69, 77, 471, 729, 1198
HpyCH4IV ACGT 3 cut(s) 234, 330, 669
HpyCH4V TGCA 5 cut(s) 766, 1257, 1326, 1353, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 1263, 1269, 1359
HpyF3I CTNAG 3 cut(s) 270, 1173, 1332
HpySE526I ACGT 3 cut(s) 234, 330, 669
Hsp92II CATG 5 cut(s) 37, 410, 552, 693, 850
HspAI GCGC 2 cut(s) 609, 1147
Kpn2I TCCGGA 2 cut(s) 415, 562
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 403
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 2 cut(s) 515, 676
Lsp1109I GCAGC 3 cut(s) 1024, 1250, 1348
LweI GCATC 3 cut(s) 981, 1246, 1355
MaeI CTAG 2 cut(s) 836, 1041
MaeII ACGT 3 cut(s) 234, 330, 669
MaeIII GTNAC 2 cut(s) 71, 1436
MbiI CCGCTC 1 cut(s) 557
MboII GAAGA 9 cut(s) 212, 431, 506, 509, 551, 698, 997, 1285, 1292
MflI RGATCY 5 cut(s) 146, 170, 266, 1118, 1328
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 7 cut(s) 419, 482, 748, 905, 1355, 1385, 1427
MlyI GAGTC 2 cut(s) 23, 923
MmeI TCCRAC 4 cut(s) 315, 338, 677, 1128
MroI TCCGGA 2 cut(s) 415, 562
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 2 cut(s) 485, 903
MslI CAYNNNNRTG 1 cut(s) 893
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 5 cut(s) 285, 416, 543, 563, 1234
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 4 cut(s) 352, 1263, 1269, 1359
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 689
NdeI CATATG 1 cut(s) 26
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 5 cut(s) 37, 410, 552, 693, 850
NlaIV GGNNCC 2 cut(s) 622, 678
NsbI TGCGCA 1 cut(s) 610
NspV TTCGAA 2 cut(s) 1014, 1028
PaeR7I CTCGAG 1 cut(s) 872
PciSI GCTCTTC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 1246
PdiI GCCGGC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 4 cut(s) 556, 1039, 1265, 1338
PleI GAGTC 2 cut(s) 22, 922
PpsI GAGTC 2 cut(s) 22, 922
Ppu21I YACGTR 1 cut(s) 331
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 3 cut(s) 444, 506, 641
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 622, 678
PspPI GGNCC 2 cut(s) 552, 719
PstI CTGCAG 2 cut(s) 768, 1364
PsuI RGATCY 5 cut(s) 146, 170, 266, 1118, 1328
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 4 cut(s) 23, 473, 731, 1405
RsaNI GTAC 4 cut(s) 22, 472, 730, 1404
RseI CAYNNNNRTG 1 cut(s) 893
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 2 cut(s) 485, 903
SatI GCNGC 4 cut(s) 555, 1038, 1264, 1337
Sau96I GGNCC 2 cut(s) 552, 719
SchI GAGTC 2 cut(s) 23, 923
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 3 cut(s) 981, 1246, 1355
SfcI CTRYAG 3 cut(s) 764, 1194, 1360
Sfr274I CTCGAG 1 cut(s) 872
SfuI TTCGAA 2 cut(s) 1014, 1028
SlaI CTCGAG 1 cut(s) 872
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 835
Sse9I AATT 7 cut(s) 419, 482, 748, 905, 1355, 1385, 1427
SsiI CCGC 4 cut(s) 288, 555, 674, 1206
SspI AATATT 1 cut(s) 1019
SspMI CTAG 2 cut(s) 836, 1041
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 3 cut(s) 9, 321, 689
TaaI ACNGT 5 cut(s) 69, 77, 471, 729, 1198
TaiI ACGT 3 cut(s) 237, 333, 672
TaqI TCGA 6 cut(s) 459, 480, 585, 873, 1014, 1028
TaqII GACCGA 2 cut(s) 113, 910
TasI AATT 7 cut(s) 419, 482, 748, 905, 1355, 1385, 1427
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 557
Tru1I TTAA 2 cut(s) 485, 903
Tru9I TTAA 2 cut(s) 485, 903
TscAI CASTG 5 cut(s) 74, 82, 1143, 1355, 1414
TseI GCWGC 3 cut(s) 1037, 1263, 1336
TspDTI ATGAA 3 cut(s) 352, 711, 863
TspGWI ACGGA 1 cut(s) 1076
TspRI CASTG 5 cut(s) 74, 82, 1143, 1355, 1414
Van91I CCANNNNNTGG 1 cut(s) 451
XapI RAATTY 4 cut(s) 419, 905, 1355, 1427
XhoI CTCGAG 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 2 cut(s) 836, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.