Rh1CG384400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005924
Physical Location & Seq
Forward (+)
65433630 .. 65436163
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG384400.1

Sequence Viewer

Length: 1512 bp
ATGGGGCGGAAGTCGAAGTCGAGATTTAGGGAGGCTGTTCATCTGGATAGGGGCGACAAGGAAGCCAAGGAGTCGCTGTACATATGTAGCATGGAGAGATATAGGGACGAGAGAGTGTTTACACAGTGTTACAGTATCCAGGCCATCAACTTGACCGACTTGCTCTCCTTTTCCGATACTCCGATTACCATCTCTTTCTCCAGATCTCCACCAACCAAAGCTATGGGATCTCCACCAACCAAAGTCCAAGACCATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGAGATGTGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAAATACGTCCGACTTCCAAGGTCTACGTGTTGGACACCTTGCGAGATAAGCCCAAGTTCATCAAACGCAAAGCCAACAAACCCAAAGCTCGTGATCATGGAATTCCGGAATTTCAATCACCAAAACATCGTCCCCAGCTGATGGAGATCGAGGGTAAACTGTACGCTCTCGACTTATGGCCTGAAAAACCCAGCTCCTCTTCCTGCTCCTCGTCCTCGTCCTTTGAGGTATTTGACCCCCAAACTGGATCATGGGCCGCTCTTCCGGATCATCCTCCCCCGATTATCGAATGTGGTGGTCCCCTCTCTTGCGCAGTTGTGGGCACCAAGTTCTTGATCTGTGCTTGGGATACTCCGGCCTACTGCTTTGACGTGGCGGAGCCTACCCGACCATGGAATGAACTCTGGGTTAGTCATGACGGCCATAAACTGTACGATTATAATGACCCCAATGCCCTTCCCTTTCTGCAGGTTTTGGTTTTGGACTTGGAGGAGGATAATCATAAGATATTATTTTCCTACTGTGGGAACGATATACTAGTCTTCCACATGAACCTGTCCAATGATCTTGCTTTCGAGCTTATAGCAACCATAGAGGTGGATATTAAATTTGATGAGTCCTCAGTCAGTTTCACCCATCTTGGAGGTCAAAAAGTATGCTTTGTGTTCTTGGATTGGTGGATTTTTGATAAGATGCGTGGGGTTTTCTTCACATTCGAATATTCCTTTTCGAAATCTGCTGCTAGTCCTGACACTCATACCAGCAGTTGTGGTGATGATCCATATTTCCGTGTGTTTTACCCCTCCAACTCGAATGGTAGATCCTTTTCTGCCAAAACACTGGGTTGGCGCACCTTTGAATACCACTACTGGTCTGAGGAAGCTTCTCCCATATCTACAGAAGTGTGCGGTTTAGCTGTGCTTCCACTCCATGACCGGCATCGTGAGGAGCGTGCAATCTGCAAAAGCTGCCGACGCTACTTTCCCGATATAGAACTCTTCAATCGTCACTTATCTATCGATCCTTGTTGCAGATCTGAGCAGCAACTCATCCAGTGCAAATTCTGCAGATGCTACTTTTCCAAGCAACAATTGTTTGCTCACTTCAGTACCAGTGTGAGTTGTAAATCAAAATTTACAGGTAACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

503

Amino Acids

57.53

Weight (kDa)

6.26

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 155 - 253 1.1e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
Acc16I TGCGCA 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 384
AccIII TCCGGA 2 cut(s) 466, 625
AciI CCGC 5 cut(s) 7, 345, 618, 737, 1269
AclWI GGATC 7 cut(s) 235, 331, 616, 636, 1133, 1176, 1376
AcoI YGGCCR 2 cut(s) 339, 781
AcsI RAATTY 5 cut(s) 462, 470, 968, 1421, 1493
AcuI CTGAAG 1 cut(s) 1450
AfaI GTAC 4 cut(s) 80, 524, 794, 1471
AfiI CCNNNNNNNGG 4 cut(s) 502, 605, 753, 885
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 5 cut(s) 281, 353, 476, 1220, 1363
AhlI ACTAGT 1 cut(s) 898
AjiI CACGTC 1 cut(s) 733
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 8 cut(s) 221, 449, 499, 555, 940, 1244, 1277, 1329
AluI AGCT 8 cut(s) 221, 449, 499, 555, 940, 1244, 1277, 1329
AlwI GGATC 7 cut(s) 235, 331, 616, 636, 1133, 1176, 1376
Aor13HI TCCGGA 2 cut(s) 466, 625
AoxI GGCC 6 cut(s) 141, 339, 539, 615, 717, 781
ApeKI GCWGC 3 cut(s) 1100, 1329, 1402
ApoI RAATTY 5 cut(s) 462, 470, 968, 1421, 1493
AspLEI GCGC 2 cut(s) 674, 1212
AspS9I GGNCC 2 cut(s) 615, 659
AsuHPI GGTGA 3 cut(s) 471, 985, 1145
AsuII TTCGAA 2 cut(s) 1077, 1091
AvaII GGWCC 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 686
BaeI ACNNNNGTAYC 2 cut(s) 1453, 1486
BanI GGYRCC 1 cut(s) 683
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 895
BbvI GCAGC 3 cut(s) 1087, 1316, 1414
BccI CCATC 4 cut(s) 152, 197, 496, 1005
BceAI ACGGC 1 cut(s) 796
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 2 cut(s) 146, 703
BclI TGATCA 1 cut(s) 454
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 2 cut(s) 899, 1104
BfmI CTRYAG 3 cut(s) 827, 1257, 1426
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 2 cut(s) 146, 703
BglII AGATCT 2 cut(s) 203, 1394
BisI GCNGC 4 cut(s) 618, 1101, 1330, 1403
BlsI GCNGC 4 cut(s) 619, 1102, 1331, 1404
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 615, 659
BmiI GGNNCC 3 cut(s) 661, 685, 741
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 1211
BmsI GCATC 3 cut(s) 1044, 1309, 1421
BmuI ACTGGG 1 cut(s) 1211
BpiI GAAGAC 1 cut(s) 895
BpmI CTGGAG 1 cut(s) 184
Bpu14I TTCGAA 2 cut(s) 1077, 1091
Bsa29I ATCGAT 1 cut(s) 1380
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 188, 506
BsaJI CCNNGG 3 cut(s) 66, 378, 752
BsaWI WCCGGW 2 cut(s) 466, 625
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 502, 605, 753, 885
Bse118I RCCGGY 2 cut(s) 341, 1296
Bse1I ACTGG 5 cut(s) 610, 1206, 1235, 1414, 1473
Bse8I GATNNNNATC 2 cut(s) 188, 506
BseAI TCCGGA 2 cut(s) 466, 625
BseBI CCWGG 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 1380
BseDI CCNNGG 3 cut(s) 66, 378, 752
BseGI GGATG 2 cut(s) 631, 1410
BseJI GATNNNNATC 2 cut(s) 188, 506
BseLI CCNNNNNNNGG 4 cut(s) 502, 605, 753, 885
BseMII CTCAG 4 cut(s) 341, 996, 1227, 1389
BseNI ACTGG 5 cut(s) 610, 1206, 1235, 1414, 1473
BseRI GAGGAG 4 cut(s) 547, 559, 866, 1322
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 3 cut(s) 1087, 1316, 1414
BseYI CCCAGC 2 cut(s) 495, 551
BshFI GGCC 6 cut(s) 143, 341, 541, 617, 719, 783
BshNI GGYRCC 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 1380
BsiSI CCGG 5 cut(s) 342, 467, 626, 716, 1297
BslFI GGGAC 3 cut(s) 119, 477, 645
BslI CCNNNNNNNGG 4 cut(s) 502, 605, 753, 885
BsmFI GGGAC 3 cut(s) 119, 477, 645
BsnI GGCC 6 cut(s) 143, 341, 541, 617, 719, 783
Bsp119I TTCGAA 2 cut(s) 1077, 1091
Bsp1286I GDGCHC 1 cut(s) 686
Bsp13I TCCGGA 2 cut(s) 466, 625
Bsp1407I TGTACA 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 5 cut(s) 7, 345, 618, 737, 1269
BspANI GGCC 6 cut(s) 143, 341, 541, 617, 719, 783
BspCNI CTCAG 4 cut(s) 340, 995, 1228, 1390
BspDI ATCGAT 1 cut(s) 1380
BspEI TCCGGA 2 cut(s) 466, 625
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 3 cut(s) 661, 685, 741
BspMAI CTGCAG 2 cut(s) 831, 1430
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 7 cut(s) 235, 331, 616, 636, 1133, 1176, 1376
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 2 cut(s) 1077, 1091
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 620
BsrFI RCCGGY 2 cut(s) 341, 1296
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 5 cut(s) 610, 1206, 1235, 1414, 1473
BssAI RCCGGY 2 cut(s) 341, 1296
BssECI CCNNGG 3 cut(s) 66, 378, 752
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 3 cut(s) 66, 378, 752
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 5 cut(s) 126, 134, 522, 792, 884
Bst6I CTCTTC 3 cut(s) 565, 627, 1364
BstAPI GCANNNNNTGC 2 cut(s) 1329, 1425
BstAUI TGTACA 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 388
BstBI TTCGAA 2 cut(s) 1077, 1091
BstC8I GCNNGC 2 cut(s) 343, 1314
BstDEI CTNAG 4 cut(s) 327, 982, 1236, 1398
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 2 cut(s) 631, 1410
BstHHI GCGC 2 cut(s) 674, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 409, 1329, 1335, 1425
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 3 cut(s) 827, 1257, 1426
BstSLI GKGCMC 1 cut(s) 686
BstV1I GCAGC 3 cut(s) 1087, 1316, 1414
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 5 cut(s) 203, 227, 323, 1181, 1394
BstXI CCANNNNNNTGG 3 cut(s) 223, 958, 1201
BstYI RGATCY 5 cut(s) 203, 227, 323, 1181, 1394
Bsu15I ATCGAT 1 cut(s) 1380
BsuI GTATCC 2 cut(s) 146, 703
BsuRI GGCC 6 cut(s) 143, 341, 541, 617, 719, 783
BsuTUI ATCGAT 1 cut(s) 1380
BtgI CCRYGG 1 cut(s) 752
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 2 cut(s) 631, 1410
BtsIMutI CAGTG 4 cut(s) 131, 1199, 1421, 1480
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 2 cut(s) 343, 1314
CciI TCATGA 1 cut(s) 775
CfoI GCGC 2 cut(s) 674, 1212
Cfr10I RCCGGY 2 cut(s) 341, 1296
Cfr13I GGNCC 2 cut(s) 615, 659
ClaI ATCGAT 1 cut(s) 1380
CseI GACGC 1 cut(s) 1344
Csp6I GTAC 4 cut(s) 79, 523, 793, 1470
CviAII CATG 7 cut(s) 91, 458, 612, 753, 776, 910, 1292
CviQI GTAC 4 cut(s) 79, 523, 793, 1470
DdeI CTNAG 4 cut(s) 327, 982, 1236, 1398
EaeI YGGCCR 2 cut(s) 339, 781
Eam1104I CTCTTC 3 cut(s) 565, 627, 1364
EarI CTCTTC 3 cut(s) 565, 627, 1364
EciI GGCGGA 3 cut(s) 22, 360, 752
Eco130I CCWWGG 3 cut(s) 66, 378, 752
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 1450
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 3 cut(s) 66, 378, 752
ErhI CCWWGG 3 cut(s) 66, 378, 752
FaeI CATG 7 cut(s) 94, 461, 615, 756, 779, 913, 1295
FaqI GGGAC 3 cut(s) 119, 477, 645
FatI CATG 7 cut(s) 90, 457, 611, 752, 775, 909, 1291
FauNDI CATATG 1 cut(s) 83
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 618, 1101, 1330, 1403
FokI GGATG 2 cut(s) 618, 1397
Fsp4HI GCNGC 4 cut(s) 618, 1101, 1330, 1403
FspBI CTAG 2 cut(s) 899, 1104
FspI TGCGCA 1 cut(s) 673
GlaI GCGC 2 cut(s) 673, 1211
GluI GCNGC 4 cut(s) 618, 1101, 1330, 1403
GsaI CCCAGC 2 cut(s) 499, 555
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 6 cut(s) 143, 341, 541, 617, 719, 783
HapII CCGG 5 cut(s) 342, 467, 626, 716, 1297
HgaI GACGC 1 cut(s) 1344
HhaI GCGC 2 cut(s) 674, 1212
Hin1II CATG 7 cut(s) 94, 461, 615, 756, 779, 913, 1295
Hin6I GCGC 2 cut(s) 672, 1210
HinP1I GCGC 2 cut(s) 672, 1210
HindIII AAGCTT 1 cut(s) 1242
HinfI GANTC 2 cut(s) 71, 977
HpaII CCGG 5 cut(s) 342, 467, 626, 716, 1297
HphI GGTGA 3 cut(s) 471, 985, 1145
Hpy166II GTNNAC 3 cut(s) 120, 385, 518
Hpy188I TCNGA 7 cut(s) 175, 183, 330, 372, 1237, 1399, 1511
Hpy8I GTNNAC 3 cut(s) 120, 385, 518
Hpy99I CGWCG 2 cut(s) 293, 1338
HpyAV CCTTC 1 cut(s) 827
HpyCH4III ACNGT 5 cut(s) 126, 134, 522, 792, 884
HpyCH4IV ACGT 4 cut(s) 291, 367, 387, 732
HpyCH4V TGCA 6 cut(s) 829, 1316, 1323, 1392, 1419, 1428
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 1329, 1335, 1425
HpyF3I CTNAG 4 cut(s) 327, 982, 1236, 1398
HpySE526I ACGT 4 cut(s) 291, 367, 387, 732
Hsp92II CATG 7 cut(s) 94, 461, 615, 756, 779, 913, 1295
HspAI GCGC 2 cut(s) 672, 1210
Kpn2I TCCGGA 2 cut(s) 466, 625
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 454
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 4 cut(s) 560, 572, 739, 1309
Lsp1109I GCAGC 3 cut(s) 1087, 1316, 1414
LweI GCATC 3 cut(s) 1044, 1309, 1421
MaeI CTAG 2 cut(s) 899, 1104
MaeII ACGT 4 cut(s) 291, 367, 387, 732
MaeIII GTNAC 3 cut(s) 128, 1367, 1502
MbiI CCGCTC 1 cut(s) 620
MboII GAAGA 6 cut(s) 269, 552, 614, 895, 1060, 1351
MfeI CAATTG 1 cut(s) 1451
MflI RGATCY 5 cut(s) 203, 227, 323, 1181, 1394
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 6 cut(s) 462, 470, 968, 1421, 1451, 1493
MlyI GAGTC 2 cut(s) 80, 986
MmeI TCCRAC 3 cut(s) 372, 395, 1191
MroI TCCGGA 2 cut(s) 466, 625
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 956
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 5 cut(s) 342, 467, 626, 716, 1297
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 1451
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 4 cut(s) 409, 1329, 1335, 1425
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 752
NdeI CATATG 1 cut(s) 83
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 7 cut(s) 94, 461, 615, 756, 779, 913, 1295
NlaIV GGNNCC 3 cut(s) 661, 685, 741
NmuCI GTSAC 1 cut(s) 1367
NsbI TGCGCA 1 cut(s) 673
NspV TTCGAA 2 cut(s) 1077, 1091
PagI TCATGA 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 627
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 1309
PdiI GCCGGC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 4 cut(s) 619, 1102, 1331, 1404
PleI GAGTC 2 cut(s) 79, 985
PpsI GAGTC 2 cut(s) 79, 985
Ppu21I YACGTR 1 cut(s) 388
PsiI TTATAA 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 2 cut(s) 495, 551
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 661, 685, 741
PspPI GGNCC 2 cut(s) 615, 659
PstI CTGCAG 2 cut(s) 831, 1430
PsuI RGATCY 5 cut(s) 203, 227, 323, 1181, 1394
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 4 cut(s) 80, 524, 794, 1471
RsaNI GTAC 4 cut(s) 79, 523, 793, 1470
RseI CAYNNNNRTG 1 cut(s) 956
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 966
SatI GCNGC 4 cut(s) 618, 1101, 1330, 1403
Sau96I GGNCC 2 cut(s) 615, 659
SchI GAGTC 2 cut(s) 80, 986
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 686
SfaNI GCATC 3 cut(s) 1044, 1309, 1421
SfcI CTRYAG 3 cut(s) 827, 1257, 1426
SfuI TTCGAA 2 cut(s) 1077, 1091
SinI GGWCC 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 956
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 6 cut(s) 462, 470, 968, 1421, 1451, 1493
SsiI CCGC 5 cut(s) 7, 345, 618, 737, 1269
SspI AATATT 1 cut(s) 1082
SspMI CTAG 2 cut(s) 899, 1104
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 66, 378, 752
TaaI ACNGT 5 cut(s) 126, 134, 522, 792, 884
TaiI ACGT 4 cut(s) 294, 370, 390, 735
TaqII GACCGA 1 cut(s) 170
TasI AATT 6 cut(s) 462, 470, 968, 1421, 1451, 1493
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 620
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TscAI CASTG 4 cut(s) 131, 1206, 1421, 1480
TseFI GTSAC 1 cut(s) 1367
TseI GCWGC 3 cut(s) 1100, 1329, 1402
Tsp45I GTSAC 1 cut(s) 1367
TspDTI ATGAA 4 cut(s) 29, 409, 774, 926
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 4 cut(s) 131, 1206, 1421, 1480
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 659
XapI RAATTY 5 cut(s) 462, 470, 968, 1421, 1493
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 899, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.