Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001308.1

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Reverse (-)

140359 .. 141335

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001308.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggcggctgaggcggattgggtctcgaccaagtcgctgtatatttgtagcatggagagatatagggacgagctcgggttttcacattgttacagtgtccaggccctcaacttgaccgacttgctctccttttccgatacgccgattaccatatctttttccagatctcctccaaccgaatctatgagatctccaatagcaacgagccatgaccaagaccaagaccatattctgcgagaaattgttttggccggcggactagaacgtccacatcgacatccgacttccaaggtctacgggttggacaccttgcgaggtaagcccaagttcatcaaacgcaaagccaacaaacccaaagctcgtgataatggaattccggaatttcaatcaccaaaacgtcctccccagctgatggaggttgagggtaaactgtacgctctcgacttacagcctgaagaagacttccccagctcctcgtcctcgtcctttgaggtatttgacccccaaaccggatcatgggccgcccttccggatcatcctccccctattatcgaatgcggtgatatcctctcttgtgcagttgtcagcaccaagatcttgatctctggcttggatactccggtctactgctttgacgtagcggagcctagccgaccatggaatgaactctcggttcatcattaccgcgatcaacaactgtcaaattctgatgatgagtccggtgcccttccctttttggatgttttggaggaagatagtggtaagatattgtttttctccagtggtgggaacattatacgagtcttttacatgaacctgtccaatgatcttgttctcgagcttgtagcaaccattaagttggatattaaatttgatcccccctcaatcagttttgcccatattggaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.73

Weight (kDa)

4.98

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccI	GTMKAC	2 cut(s)	294, 624
AccII	CGCG	1 cut(s)	687
AccIII	TCCGGA	2 cut(s)	376, 529
AciI	CCGC	7 cut(s)	5, 14, 255, 522, 558, 641, 685
AclWI	GGATC	3 cut(s)	520, 540, 869
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	4 cut(s)	372, 380, 703, 869
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	412, 509, 516, 786
AgsI	TTSAA	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	5 cut(s)	73, 359, 409, 471, 841
AluI	AGCT	5 cut(s)	73, 359, 409, 471, 841
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	3 cut(s)	520, 540, 869
Ama87I	CYCGRG	2 cut(s)	74, 836
Aor13HI	TCCGGA	2 cut(s)	376, 529
AoxI	GGCC	3 cut(s)	102, 249, 519
ApoI	RAATTY	4 cut(s)	372, 380, 703, 869
AspS9I	GGNCC	2 cut(s)	103, 519
AsuHPI	GGTGA	2 cut(s)	381, 572
AvaI	CYCGRG	2 cut(s)	74, 836
BaeGI	GKGCMC	1 cut(s)	727
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	260, 648
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	3 cut(s)	164, 188, 594
BisI	GCNGC	2 cut(s)	6, 522
BlsI	GCNGC	2 cut(s)	7, 523
Bme1390I	CCNGG	1 cut(s)	101
BmeT110I	CYCGRG	2 cut(s)	74, 836
BmgT120I	GGNCC	2 cut(s)	103, 519
BmiI	GGNNCC	2 cut(s)	645, 724
BmrFI	CCNGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	763
Bpu10I	CCTNAGC	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	288, 656
BsaWI	WCCGGW	5 cut(s)	376, 509, 529, 619, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 509, 516, 786
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	599
BseAI	TCCGGA	2 cut(s)	376, 529
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	288, 656
BseGI	GGATG	3 cut(s)	277, 535, 745
BseJI	GATNNNNATC	1 cut(s)	599
BseLI	CCNNNNNNNGG	4 cut(s)	412, 509, 516, 786
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	2 cut(s)	159, 463
BseSI	GKGCMC	1 cut(s)	727
BseYI	CCCAGC	2 cut(s)	405, 467
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	104, 251, 521
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	2 cut(s)	74, 836
BsiSI	CCGG	6 cut(s)	252, 377, 510, 530, 620, 720
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	412, 509, 516, 786
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	104, 251, 521
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	2 cut(s)	74, 836
Bsp1286I	GDGCHC	2 cut(s)	75, 727
Bsp13I	TCCGGA	2 cut(s)	376, 529
Bsp143I	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	7 cut(s)	5, 14, 255, 522, 558, 641, 685
BspANI	GGCC	3 cut(s)	104, 251, 521
BspEI	TCCGGA	2 cut(s)	376, 529
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	645, 724
BspPI	GGATC	3 cut(s)	520, 540, 869
BspT107I	GGYRCC	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	780
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	288, 656
BssMI	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	288, 656
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	95, 432, 699
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	656
BstF5I	GGATG	3 cut(s)	277, 535, 745
BstFNI	CGCG	1 cut(s)	687
BstKTI	GATC	9 cut(s)	167, 191, 515, 535, 597, 603, 691, 829, 877
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 319
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	727
BstUI	CGCG	1 cut(s)	687
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	3 cut(s)	164, 188, 594
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	3 cut(s)	164, 188, 594
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	104, 251, 521
BtgI	CCRYGG	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	277, 535, 745
BtsIMutI	CAGTG	2 cut(s)	100, 787
Cac8I	GCNNGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	103, 519
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	5 cut(s)	52, 209, 516, 657, 811
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	9 cut(s)	166, 190, 514, 534, 596, 602, 690, 828, 876
DpnII	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	2 cut(s)	29, 270
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	288, 656
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	2 cut(s)	74, 836
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	288, 656
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	2 cut(s)	288, 656
FaeI	CATG	5 cut(s)	55, 212, 519, 660, 814
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	51, 208, 515, 656, 810
FblI	GTMKAC	2 cut(s)	294, 624
Fnu4HI	GCNGC	2 cut(s)	6, 522
FokI	GGATG	3 cut(s)	264, 522, 752
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	6, 522
FspBI	CTAG	2 cut(s)	260, 648
GluI	GCNGC	2 cut(s)	6, 522
GsaI	CCCAGC	2 cut(s)	409, 471
GsuI	CTGGAG	1 cut(s)	763
HaeIII	GGCC	3 cut(s)	104, 251, 521
HapII	CCGG	6 cut(s)	252, 377, 510, 530, 620, 720
Hin1II	CATG	5 cut(s)	55, 212, 519, 660, 814
HinfI	GANTC	3 cut(s)	179, 716, 801
HpaII	CCGG	6 cut(s)	252, 377, 510, 530, 620, 720
HphI	GGTGA	2 cut(s)	381, 572
Hpy166II	GTNNAC	4 cut(s)	269, 295, 428, 625
Hpy188I	TCNGA	3 cut(s)	136, 282, 709
Hpy188III	TCNNGA	8 cut(s)	25, 162, 362, 377, 440, 530, 598, 836
Hpy8I	GTNNAC	4 cut(s)	269, 295, 428, 625
HpyAV	CCTTC	2 cut(s)	536, 737
HpyCH4III	ACNGT	3 cut(s)	95, 432, 699
HpyCH4IV	ACGT	3 cut(s)	265, 397, 636
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 319
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	3 cut(s)	265, 397, 636
Hsp92II	CATG	5 cut(s)	55, 212, 519, 660, 814
Kpn2I	TCCGGA	2 cut(s)	376, 529
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
LmnI	GCTCC	2 cut(s)	476, 643
MaeI	CTAG	2 cut(s)	260, 648
MaeII	ACGT	3 cut(s)	265, 397, 636
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	9 cut(s)	166, 190, 514, 534, 596, 602, 690, 828, 876
MboI	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
MboII	GAAGA	3 cut(s)	467, 470, 764
MflI	RGATCY	3 cut(s)	164, 188, 594
MhlI	GDGCHC	2 cut(s)	75, 727
MluCI	AATT	5 cut(s)	240, 372, 380, 703, 869
MlyI	GAGTC	2 cut(s)	725, 810
MmeI	TCCRAC	4 cut(s)	197, 282, 305, 840
MroI	TCCGGA	2 cut(s)	376, 529
MroNI	GCCGGC	1 cut(s)	251
MseI	TTAA	3 cut(s)	855, 867, 910
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	6 cut(s)	252, 377, 510, 530, 620, 720
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	11, 319
NaeI	GCCGGC	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	5 cut(s)	55, 212, 519, 660, 814
NlaIV	GGNNCC	2 cut(s)	645, 724
PaeR7I	CTCGAG	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	560
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	7, 523
PleI	GAGTC	2 cut(s)	724, 809
PpsI	GAGTC	2 cut(s)	724, 809
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	405, 467
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	645, 724
PspPI	GGNCC	2 cut(s)	103, 519
PsuI	RGATCY	3 cut(s)	164, 188, 594
PsyI	GACNNNGTC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	855, 867, 910
SatI	GCNGC	2 cut(s)	6, 522
Sau3AI	GATC	9 cut(s)	164, 188, 512, 532, 594, 600, 688, 826, 874
Sau96I	GGNCC	2 cut(s)	103, 519
SchI	GAGTC	2 cut(s)	725, 810
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	75, 727
Sfr274I	CTCGAG	1 cut(s)	836
SlaI	CTCGAG	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	5 cut(s)	240, 372, 380, 703, 869
SsiI	CCGC	7 cut(s)	5, 14, 255, 522, 558, 641, 685
SspMI	CTAG	2 cut(s)	260, 648
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	288, 656
TaaI	ACNGT	3 cut(s)	95, 432, 699
TaiI	ACGT	3 cut(s)	268, 400, 639
TaqI	TCGA	5 cut(s)	26, 274, 441, 552, 837
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	240, 372, 380, 703, 869
TauI	GCSGC	2 cut(s)	8, 524
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	855, 867, 910
Tru9I	TTAA	3 cut(s)	855, 867, 910
TscAI	CASTG	2 cut(s)	100, 787
TspDTI	ATGAA	4 cut(s)	319, 665, 678, 827
TspRI	CASTG	2 cut(s)	100, 787
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	412
XapI	RAATTY	4 cut(s)	372, 380, 703, 869
XhoI	CTCGAG	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	294, 624
XspI	CTAG	2 cut(s)	260, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.