Rmu_sc0001198.1_g000011

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001198.1
Physical Location & Seq
Reverse (-)
58682 .. 61187
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001198.1_g000011.1.cds

Sequence Viewer

Length: 1497 bp
atggggcggaagtcgaagtcgaagtcgagatttagggaggctgttcatctggataggggcgacaaggagtcgctctatatgtgtagcatggagatgtatagggacgagacagtgtttacacattgttacagtatccaggccatcgacttgaccgacttgctctccttttccgatactccgattaccatctctttctccagatctccaccaacgaaagctatgggatctccaccaaccaaagtccaagaccatatcctgcgagaagttgattttctccaaggcaacgacgttccctacgacatgggtttcggtgtgtttggatctcagattgttttagccggcggacttcaacttccacaacgacatcggacgacttccaaggtctacgtgttggacaccttgcgagataagcccaagttcgtcaaacgcaaagccaacaaacccaaagctcgtgatcatggaattccggaatttcaatcaccaaaccgtcttccccagctgatggagatcgaaggtaaactgtacgccctcgacttacggcctcaacaaggcttccccagctcctcgtcctttgaggtatttgacccccaaaccggatcgtgggccgctcttccggatcatcctcccccgattatccaatgtcgtggttccctcgcttgtgcagttgtgggcaccaaattcttgatctctgcccgcgatactccggtctactgctttgacgtggcggagcctacacgacaatggaatgaactctgggttcgtcatgaccgccataaactgtacgattatattgaccccggagcccttccctttctgcaggttttggttttggacttggaggaggaaaatcataagatattattttcctcctctgggaacgatatactagtcttccacatgaacctgtccaatgatctcgctctcgagcttatagcaaccatagaggtggatattaaaattgatgagtgctcagtcagcttcatccatcttggaggtcaaaaagtatgctttgtgttcttggattggtggatttttgataagatgcgtggggttttcttcacattcgaatattccttttcgaaatctgctgctagtcctgacactcataccagcaattgtggtgatgatccatatttccgtgtgttttacccctccaactcgaatggtagatccttttctgccaaaacactgggttggcgcacctttgaataccactactggtctgaggaagcttctcccatatctacagatgtgtgcggtttagccgtgcttccactccatcaccagcatcgtgaggggcgtatctgcaaaagctgccaatgctactttcccgatatagaactcttcaatcttcacttatctgtcaatccttgttgcagatctgagcagcaactcatccagtgcaaattctgcagatgctacttttccaagcaagaattgtttgctcacttcagtaccagtgcgagttgtaaatcaaaatttacaggtaacatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

498

Amino Acids

56.85

Weight (kDa)

6.52

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 1 cut(s) 608
AccI GTMKAC 2 cut(s) 384, 708
AccII CGCG 1 cut(s) 696
AccIII TCCGGA 2 cut(s) 466, 613
AciI CCGC 7 cut(s) 7, 342, 606, 694, 725, 769, 1257
AclWI GGATC 6 cut(s) 232, 328, 604, 624, 1121, 1164
AcsI RAATTY 5 cut(s) 462, 470, 677, 1406, 1478
AcuI CTGAAG 1 cut(s) 1435
AfaI GTAC 3 cut(s) 524, 782, 1456
AfiI CCNNNNNNNGG 5 cut(s) 502, 548, 593, 600, 873
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 4 cut(s) 350, 476, 1208, 1348
AhdI GACNNNNNGTC 1 cut(s) 67
AhlI ACTAGT 1 cut(s) 886
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 1311, 1343
AluBI AGCT 8 cut(s) 218, 449, 499, 561, 928, 978, 1232, 1314
AluI AGCT 8 cut(s) 218, 449, 499, 561, 928, 978, 1232, 1314
Alw21I GWGCWC 1 cut(s) 971
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 6 cut(s) 232, 328, 604, 624, 1121, 1164
Ama87I CYCGRG 1 cut(s) 923
Aor13HI TCCGGA 2 cut(s) 466, 613
AoxI GGCC 3 cut(s) 138, 539, 603
ApeKI GCWGC 3 cut(s) 1088, 1314, 1387
ApoI RAATTY 5 cut(s) 462, 470, 677, 1406, 1478
ArsI GACNNNNNNTTYG 4 cut(s) 8, 40, 290, 322
AspLEI GCGC 1 cut(s) 1200
AspS9I GGNCC 1 cut(s) 603
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 3 cut(s) 471, 1133, 1274
AsuII TTCGAA 2 cut(s) 1065, 1079
AvaI CYCGRG 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 674
BaeI ACNNNNGTAYC 4 cut(s) 690, 723, 1438, 1471
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 805
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 2 cut(s) 482, 883
Bbv12I GWGCWC 1 cut(s) 971
BbvI GCAGC 3 cut(s) 1075, 1301, 1399
BccI CCATC 5 cut(s) 149, 194, 496, 993, 1287
BceAI ACGGC 2 cut(s) 554, 1250
BciT130I CCWGG 1 cut(s) 137
BciVI GTATCC 1 cut(s) 143
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 2 cut(s) 887, 1092
BfmI CTRYAG 3 cut(s) 815, 1245, 1411
BfuAI ACCTGC 1 cut(s) 808
BfuI GTATCC 1 cut(s) 143
BglII AGATCT 2 cut(s) 200, 1379
BisI GCNGC 4 cut(s) 606, 1089, 1315, 1388
BlsI GCNGC 4 cut(s) 607, 1090, 1316, 1389
Bme1390I CCNGG 2 cut(s) 137, 798
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 923
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 4 cut(s) 649, 673, 729, 802
BmrFI CCNGG 2 cut(s) 137, 798
BmrI ACTGGG 1 cut(s) 1199
BmsI GCATC 3 cut(s) 1032, 1297, 1406
BmuI ACTGGG 1 cut(s) 1199
BpiI GAAGAC 2 cut(s) 482, 883
BpmI CTGGAG 1 cut(s) 181
Bpu14I TTCGAA 2 cut(s) 1065, 1079
BpuMI CCSGG 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 185, 506
BsaJI CCNNGG 3 cut(s) 277, 378, 796
BsaWI WCCGGW 4 cut(s) 466, 593, 613, 703
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 502, 548, 593, 600, 873
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 4 cut(s) 1194, 1223, 1399, 1458
Bse8I GATNNNNATC 2 cut(s) 185, 506
BseAI TCCGGA 2 cut(s) 466, 613
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 277, 378, 796
BseGI GGATG 3 cut(s) 619, 981, 1395
BseJI GATNNNNATC 2 cut(s) 185, 506
BseLI CCNNNNNNNGG 5 cut(s) 502, 548, 593, 600, 873
BseMII CTCAG 4 cut(s) 338, 984, 1215, 1374
BseNI ACTGG 4 cut(s) 1194, 1223, 1399, 1458
BseRI GAGGAG 3 cut(s) 553, 854, 859
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 3 cut(s) 1075, 1301, 1399
BseYI CCCAGC 2 cut(s) 495, 557
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 3 cut(s) 140, 541, 605
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 971
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 6 cut(s) 339, 467, 594, 614, 704, 798
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 5 cut(s) 502, 548, 593, 600, 873
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 3 cut(s) 140, 541, 605
BsoBI CYCGRG 1 cut(s) 923
Bsp119I TTCGAA 2 cut(s) 1065, 1079
Bsp1286I GDGCHC 3 cut(s) 674, 805, 971
Bsp13I TCCGGA 2 cut(s) 466, 613
BspACI CCGC 7 cut(s) 7, 342, 606, 694, 725, 769, 1257
BspANI GGCC 3 cut(s) 140, 541, 605
BspCNI CTCAG 4 cut(s) 337, 983, 1216, 1375
BspEI TCCGGA 2 cut(s) 466, 613
BspFNI CGCG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 649, 673, 729, 802
BspMAI CTGCAG 2 cut(s) 819, 1415
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 6 cut(s) 232, 328, 604, 624, 1121, 1164
BspQI GCTCTTC 1 cut(s) 615
BspT104I TTCGAA 2 cut(s) 1065, 1079
BspT107I GGYRCC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 4 cut(s) 1194, 1223, 1399, 1458
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 277, 378, 796
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 2 cut(s) 277, 378
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 5 cut(s) 112, 131, 488, 522, 780
Bst6I CTCTTC 2 cut(s) 615, 1349
BstAPI GCANNNNNTGC 2 cut(s) 1314, 1410
BstBAI YACGTR 1 cut(s) 388
BstBI TTCGAA 2 cut(s) 1065, 1079
BstC8I GCNNGC 2 cut(s) 340, 694
BstDEI CTNAG 4 cut(s) 324, 970, 1224, 1383
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 619, 981, 1395
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 1 cut(s) 1200
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 6 cut(s) 409, 558, 975, 1314, 1320, 1410
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 796
BstSFI CTRYAG 3 cut(s) 815, 1245, 1411
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 3 cut(s) 1075, 1301, 1399
BstV2I GAAGAC 2 cut(s) 482, 883
BstX2I RGATCY 5 cut(s) 200, 224, 320, 1169, 1379
BstXI CCANNNNNNTGG 3 cut(s) 644, 946, 1189
BstYI RGATCY 5 cut(s) 200, 224, 320, 1169, 1379
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 3 cut(s) 140, 541, 605
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 3 cut(s) 619, 981, 1395
BtsIMutI CAGTG 4 cut(s) 117, 1187, 1406, 1465
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 340, 694
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 1200
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 603
Csp6I GTAC 3 cut(s) 523, 781, 1455
CviAII CATG 5 cut(s) 88, 301, 458, 764, 898
CviQI GTAC 3 cut(s) 523, 781, 1455
DdeI CTNAG 4 cut(s) 324, 970, 1224, 1383
DriI GACNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 615, 1349
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 2 cut(s) 615, 1349
EciI GGCGGA 3 cut(s) 22, 357, 740
Eco130I CCWWGG 2 cut(s) 277, 378
Eco24I GRGCYC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 1435
Eco88I CYCGRG 1 cut(s) 923
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 277, 378
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 277, 378
FaeI CATG 5 cut(s) 91, 304, 461, 767, 901
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 87, 300, 457, 763, 897
FauI CCCGC 1 cut(s) 701
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 2 cut(s) 384, 708
Fnu4HI GCNGC 4 cut(s) 606, 1089, 1315, 1388
FokI GGATG 3 cut(s) 606, 968, 1382
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 4 cut(s) 606, 1089, 1315, 1388
FspBI CTAG 2 cut(s) 887, 1092
GlaI GCGC 1 cut(s) 1199
GluI GCNGC 4 cut(s) 606, 1089, 1315, 1388
GsaI CCCAGC 2 cut(s) 499, 561
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 3 cut(s) 140, 541, 605
HapII CCGG 6 cut(s) 339, 467, 594, 614, 704, 798
HhaI GCGC 1 cut(s) 1200
Hin1II CATG 5 cut(s) 91, 304, 461, 767, 901
Hin6I GCGC 1 cut(s) 1198
HinP1I GCGC 1 cut(s) 1198
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 1 cut(s) 68
HpaII CCGG 6 cut(s) 339, 467, 594, 614, 704, 798
HphI GGTGA 3 cut(s) 471, 1133, 1274
Hpy166II GTNNAC 4 cut(s) 117, 385, 518, 709
Hpy188I TCNGA 7 cut(s) 172, 180, 327, 369, 1225, 1384, 1496
Hpy8I GTNNAC 4 cut(s) 117, 385, 518, 709
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 506, 815
HpyCH4III ACNGT 5 cut(s) 112, 131, 488, 522, 780
HpyCH4IV ACGT 3 cut(s) 288, 387, 720
HpyCH4V TGCA 6 cut(s) 662, 817, 1308, 1377, 1404, 1413
HpyF10VI GCNNNNNNNGC 6 cut(s) 409, 558, 975, 1314, 1320, 1410
HpyF3I CTNAG 4 cut(s) 324, 970, 1224, 1383
HpySE526I ACGT 3 cut(s) 288, 387, 720
Hsp92II CATG 5 cut(s) 91, 304, 461, 767, 901
HspAI GCGC 1 cut(s) 1198
Kpn2I TCCGGA 2 cut(s) 466, 613
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 454
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 3 cut(s) 566, 727, 800
Lsp1109I GCAGC 3 cut(s) 1075, 1301, 1399
LweI GCATC 3 cut(s) 1032, 1297, 1406
MaeI CTAG 2 cut(s) 887, 1092
MaeII ACGT 3 cut(s) 288, 387, 720
MaeIII GTNAC 2 cut(s) 125, 1487
MbiI CCGCTC 1 cut(s) 608
MboII GAAGA 6 cut(s) 482, 602, 883, 1048, 1336, 1343
MfeI CAATTG 1 cut(s) 1114
MflI RGATCY 5 cut(s) 200, 224, 320, 1169, 1379
MhlI GDGCHC 3 cut(s) 674, 805, 971
MluCI AATT 8 cut(s) 462, 470, 677, 957, 1114, 1406, 1436, 1478
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 372, 1179
MroI TCCGGA 2 cut(s) 466, 613
MroNI GCCGGC 1 cut(s) 338
MseI TTAA 1 cut(s) 954
MslI CAYNNNNRTG 3 cut(s) 92, 739, 944
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 6 cut(s) 339, 467, 594, 614, 704, 798
MspR9I CCNGG 2 cut(s) 137, 798
MunI CAATTG 1 cut(s) 1114
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 6 cut(s) 409, 558, 975, 1314, 1320, 1410
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 798
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 5 cut(s) 91, 304, 461, 767, 901
NlaIV GGNNCC 4 cut(s) 649, 673, 729, 802
NspV TTCGAA 2 cut(s) 1065, 1079
PaeR7I CTCGAG 1 cut(s) 923
PagI TCATGA 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 294, 1297
PdiI GCCGGC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 4 cut(s) 607, 1090, 1316, 1389
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 2 cut(s) 495, 557
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 649, 673, 729, 802
PspPI GGNCC 1 cut(s) 603
PstI CTGCAG 2 cut(s) 819, 1415
PsuI RGATCY 5 cut(s) 200, 224, 320, 1169, 1379
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 3 cut(s) 524, 782, 1456
RsaNI GTAC 3 cut(s) 523, 781, 1455
RseI CAYNNNNRTG 3 cut(s) 92, 739, 944
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 1 cut(s) 954
SatI GCNGC 4 cut(s) 606, 1089, 1315, 1388
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 137, 798
SduI GDGCHC 3 cut(s) 674, 805, 971
SfaNI GCATC 3 cut(s) 1032, 1297, 1406
SfcI CTRYAG 3 cut(s) 815, 1245, 1411
Sfr274I CTCGAG 1 cut(s) 923
SfuI TTCGAA 2 cut(s) 1065, 1079
SlaI CTCGAG 1 cut(s) 923
SmiMI CAYNNNNRTG 3 cut(s) 92, 739, 944
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SpeI ACTAGT 1 cut(s) 886
Sse9I AATT 8 cut(s) 462, 470, 677, 957, 1114, 1406, 1436, 1478
SsiI CCGC 7 cut(s) 7, 342, 606, 694, 725, 769, 1257
SspI AATATT 1 cut(s) 1070
SspMI CTAG 2 cut(s) 887, 1092
StyD4I CCNGG 2 cut(s) 135, 796
StyI CCWWGG 2 cut(s) 277, 378
TaaI ACNGT 5 cut(s) 112, 131, 488, 522, 780
TaiI ACGT 3 cut(s) 291, 390, 723
TaqII GACCGA 1 cut(s) 167
TasI AATT 8 cut(s) 462, 470, 677, 957, 1114, 1406, 1436, 1478
TauI GCSGC 1 cut(s) 608
Tru1I TTAA 1 cut(s) 954
Tru9I TTAA 1 cut(s) 954
TscAI CASTG 4 cut(s) 117, 1194, 1406, 1465
TseI GCWGC 3 cut(s) 1088, 1314, 1387
TspDTI ATGAA 4 cut(s) 35, 762, 914, 970
TspGWI ACGGA 1 cut(s) 1127
TspRI CASTG 4 cut(s) 117, 1194, 1406, 1465
Van91I CCANNNNNTGG 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 5 cut(s) 462, 470, 677, 1406, 1478
XhoI CTCGAG 1 cut(s) 923
XmiI GTMKAC 2 cut(s) 384, 708
XspI CTAG 2 cut(s) 887, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.