Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Forward (+)

25710123 .. 25712426

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGGGTGAGCAGAATAGGTTGGCTTCTATTTTGGGTGTGCAAAGGGTGGATAAACATGATAAATATCTGGGGCTACCTATTGAATTGAGCTACTCTAAGGAGGAAGCCTTTGGGTATTTGATTGAAAGGGTGGAAAAACGTACTCATGGTTGGAGGGAGAAGCTGCTGAGTGCAGCGGGTAAGGAGATATTAATAAAGGCCGTAGCCCAAGCCATCCCGTCCTATGTGATGAACTGTTTCGAGCTTCCTAAACATTTGTGTAATGAGATGCATCGACTTATGGCTCGGTTTTGGTGGGGAGATACGGAGGAGAAAGGGAAGATACATTGGCTCTCATGGGAGAAGCTTTGTGTTTCTAAGAAGGAGGGAGGCCTAGGGTTTAGAAATATGCATGACTTTAATTTGGCATTACTTGCCAAACAAGGGTGGAGGATACTTCAACGCCCAAATTCCCTCCTAGCCAGGTTACTGAAGGCTAGGTATTTTCCTGATAAAGGGTTTATGGCGGCTAGTTTGGAGGCTGGGGCGTCGTTTACTTGGCGGAGCATTTTGGCAGGAAGGAAAGTTTTGGAAAAAGGGCTGAGATTTCAAGTAGGAAGGGGTGACCGTATTTCTGTATGGGGGGATAGGTGGATCCCTGTACCTTTTGGGTTTAAACCTTTTTCTCCACCGGTGGCGGGGTTAGAGGATTTATTGGTGGAAGACTTGATTGACTCTGAGGATAGAGTGTGGAACGTACCTCTACTGCATGAATTGTTTACACATGAGGAGGTGAAGGCTATTGCAAGTATACCCCTAAGTATTAGGCATGCTGAGGACCGGTTAATCTGGCATTACGACTCTAAAGGTGTCTACAATGTTAAAAGTGGATATTATATATGGAGACAGGATTGTGTGAAGGACACCCATGCCTCTACATCTTGTTTGAAAGTCGGAGGATCACTAGGGGTTTACTGGTCGGCAGTCTGGAGGGCTAATGTGCCGGCGAAGGTTAAAGTGTTTATCTGGAAATTGTTGAGTGGGATTGTACCCACACGCACTGCATTGATGGATCGACGAGTTCAAATTCCCAATCCCAGGTGTGTTTTTTGTTCTGCTGCATATGAAACTACCTTGCATGTTTTTAAGGATTGTGTGCATGTTGATTGGTTCTGGTCTGTGGGACCTCTTAAGTTGAATACCAAAGACTACCATGCATTTAACGTGAAGGATTGGGTAATGAATATTATGGATGAGTTGGGTGGTGAACAGATTTGTACTTTCTTCATGGCATTGTGGGCCTTATGGAATGAGAGAAATAAAGTGGTGTGGACTGGGGCTGATTTCAACCCTTCATTTGCGGCTCAATGGTCAGTGCAGTATTTGAATGAATTTCAGAAGTATCACTGCAAATCTAGTGTGAAGCAGAAGAGGCGGGTGACGAAGTGGGAGTGCCCACCAAGTGGGAGGCTCAAAATTAATATTGATGGAGCCTTTCGAAGGGAAGATGGTTCCGGTGGTATTGGGGTAGTAGTGAGAAATGATCAAGGTGTGGGGGTCGCAGCTTTAGCTAGGCATGTTGTGCATGCTCTCTCAGCATTAAATATGGAGATTGAAGCATGTAGAGTAGGCCTCTTACTTGGTATCCACCAAGGTTGGACAGAAGTAGACATTGAAAGCGATTCTATCCTTTTGGTTGCTGCCCTAAAAAGAGGTGAGGAAGATATGTCGTTGGTGGGACGTGTGTTGGATGATTGTAGAGCATATATGTCTGCTTTTCAGTTAGTCAACATTCGTCATATCTATAGAGAAGCAAATGGTGTAGCTGATAGATTAGCGCACCTTGCTAGTGTTGGCGTGATTGATGATGTTTGGTTTGGGGAGACTCCTGCTATTATTCAGGACGTTCTCTACGAGGATTATTGTAACTGCTCGAAGAAAGAGAAGTTTATGACGTCACAACCCAACGGTCATAATTTAGGCTTGGGATGTTGCGATTCAGATGTTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCCGCACATCTGGACAAGACCTTCTTCATTCCCAAGAAGAAAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

690

Amino Acids

78.45

Weight (kDa)

7.56

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	288 - 385	3.1e-13	zinc-binding in reverse transcriptase
RVT_3	PF13456	487 - 608	1.8e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1937
AccB7I	CCANNNNNTGG	1 cut(s)	1442
AccI	GTMKAC	3 cut(s)	790, 852, 1647
AciI	CCGC	7 cut(s)	176, 506, 541, 677, 1340, 1414, 2026
AclWI	GGATC	4 cut(s)	628, 641, 946, 1059
AcoI	YGGCCR	1 cut(s)	2023
AcsI	RAATTY	3 cut(s)	448, 1065, 1370
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	2 cut(s)	527, 1934
AdeI	CACNNNGTG	1 cut(s)	1442
AfaI	GTAC	5 cut(s)	142, 642, 738, 1029, 1258
AfiI	CCNNNNNNNGG	6 cut(s)	423, 494, 677, 1077, 1442, 1479
AflII	CTTAAG	1 cut(s)	1169
AflIII	ACRYGT	1 cut(s)	1720
AgeI	ACCGGT	2 cut(s)	670, 819
AjiI	CACGTC	1 cut(s)	1721
AjnI	CCWGG	2 cut(s)	461, 1076
AluBI	AGCT	7 cut(s)	90, 163, 244, 346, 1544, 1550, 1805
AluI	AGCT	7 cut(s)	90, 163, 244, 346, 1544, 1550, 1805
Alw26I	GTCTC	2 cut(s)	877, 1856
AlwI	GGATC	4 cut(s)	628, 641, 946, 1059
AoxI	GGCC	5 cut(s)	198, 370, 1278, 1609, 2023
ApeKI	GCWGC	5 cut(s)	163, 173, 1097, 1541, 1679
ApoI	RAATTY	3 cut(s)	448, 1065, 1370
AseI	ATTAAT	2 cut(s)	191, 1458
AsiGI	ACCGGT	2 cut(s)	670, 819
Asp700I	GAANNNNTTC	1 cut(s)	236
AspA2I	CCTAGG	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	1819
AspS9I	GGNCC	3 cut(s)	817, 1163, 1278
AsuHPI	GGTGA	6 cut(s)	17, 614, 784, 1256, 1429, 1706
AsuII	TTCGAA	1 cut(s)	1477
AvaII	GGWCC	2 cut(s)	817, 1163
AvrII	CCTAGG	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	1436
BamHI	GGATCC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	5 cut(s)	150, 185, 1084, 1553, 1666
BccI	CCATC	5 cut(s)	221, 1042, 1460, 1481, 1982
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	463, 1078
BciVI	GTATCC	2 cut(s)	426, 1634
BclI	TGATCA	1 cut(s)	1522
BcoDI	GTCTC	2 cut(s)	877, 1856
BfaI	CTAG	8 cut(s)	374, 458, 477, 510, 944, 1395, 1551, 1827
BfmI	CTRYAG	1 cut(s)	1783
BfrI	CTTAAG	1 cut(s)	1169
BfuI	GTATCC	2 cut(s)	426, 1634
BisI	GCNGC	8 cut(s)	164, 174, 507, 1098, 1341, 1542, 1680, 2026
BlnI	CCTAGG	1 cut(s)	373
BlsI	GCNGC	8 cut(s)	165, 175, 508, 1099, 1342, 1543, 1681, 2027
Bme1390I	CCNGG	2 cut(s)	463, 1078
Bme18I	GGWCC	2 cut(s)	817, 1163
BmgBI	CACGTC	1 cut(s)	1721
BmgT120I	GGNCC	3 cut(s)	817, 1163, 1278
BmiI	GGNNCC	4 cut(s)	635, 1164, 1471, 1492
BmrFI	CCNGG	2 cut(s)	463, 1078
BmrI	ACTGGG	1 cut(s)	1323
BmsI	GCATC	2 cut(s)	258, 280
BmuI	ACTGGG	1 cut(s)	1323
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	1596, 1628
BpmI	CTGGAG	1 cut(s)	988
Bpu10I	CCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	1477
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	527, 1934
BsaJI	CCNNGG	3 cut(s)	373, 1076, 1630
BsaWI	WCCGGW	3 cut(s)	670, 819, 1493
Bsc4I	CCNNNNNNNGG	6 cut(s)	423, 494, 677, 1077, 1442, 1479
Bse118I	RCCGGY	3 cut(s)	670, 819, 982
Bse1I	ACTGG	2 cut(s)	959, 1318
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	463, 1078
BseDI	CCNNGG	3 cut(s)	373, 1076, 1630
BseGI	GGATG	4 cut(s)	213, 1237, 1735, 1973
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	6 cut(s)	423, 494, 677, 1077, 1442, 1479
BseMII	CTCAG	5 cut(s)	158, 572, 708, 804, 1587
BseNI	ACTGG	2 cut(s)	959, 1318
BseRI	GAGGAG	2 cut(s)	323, 782
BseSI	GKGCMC	1 cut(s)	1436
BseXI	GCAGC	5 cut(s)	150, 185, 1084, 1553, 1666
BseYI	CCCAGC	1 cut(s)	521
BsgI	GTGCAG	2 cut(s)	192, 1376
BshFI	GGCC	5 cut(s)	200, 372, 1280, 1611, 2025
BshTI	ACCGGT	2 cut(s)	670, 819
BsiSI	CCGG	4 cut(s)	671, 820, 983, 1494
BslFI	GGGAC	2 cut(s)	1176, 1731
BslI	CCNNNNNNNGG	6 cut(s)	423, 494, 677, 1077, 1442, 1479
BsmAI	GTCTC	2 cut(s)	877, 1856
BsmFI	GGGAC	2 cut(s)	1176, 1731
BsnI	GGCC	5 cut(s)	200, 372, 1280, 1611, 2025
Bsp119I	TTCGAA	1 cut(s)	1477
Bsp1286I	GDGCHC	1 cut(s)	1436
Bsp143I	GATC	4 cut(s)	633, 938, 1051, 1522
BspACI	CCGC	7 cut(s)	176, 506, 541, 677, 1340, 1414, 2026
BspANI	GGCC	5 cut(s)	200, 372, 1280, 1611, 2025
BspCNI	CTCAG	5 cut(s)	159, 573, 709, 805, 1586
BspLI	GGNNCC	4 cut(s)	635, 1164, 1471, 1492
BspPI	GGATC	4 cut(s)	628, 641, 946, 1059
BspT104I	TTCGAA	1 cut(s)	1477
BspTI	CTTAAG	1 cut(s)	1169
BsrFI	RCCGGY	3 cut(s)	670, 819, 982
BsrI	ACTGG	2 cut(s)	959, 1318
BssAI	RCCGGY	3 cut(s)	670, 819, 982
BssECI	CCNNGG	3 cut(s)	373, 1076, 1630
BssMI	GATC	4 cut(s)	633, 938, 1051, 1522
BssNAI	GTATAC	1 cut(s)	791
BssNI	GRCGYC	2 cut(s)	527, 1934
BssT1I	CCWWGG	2 cut(s)	373, 1630
Bst1107I	GTATAC	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	463, 1078
Bst4CI	ACNGT	3 cut(s)	236, 608, 1949
Bst6I	CTCTTC	1 cut(s)	1403
BstACI	GRCGYC	2 cut(s)	527, 1934
BstAFI	CTTAAG	1 cut(s)	1169
BstAPI	GCANNNNNTGC	2 cut(s)	413, 1561
BstBI	TTCGAA	1 cut(s)	1477
BstC8I	GCNNGC	5 cut(s)	810, 984, 1566, 2019, 2023
BstDEI	CTNAG	8 cut(s)	96, 167, 357, 581, 717, 797, 813, 1573
BstEII	GGTNACC	1 cut(s)	602
BstENI	CCTNNNNNAGG	2 cut(s)	492, 1477
BstF5I	GGATG	4 cut(s)	213, 1237, 1735, 1973
BstHHI	GCGC	1 cut(s)	1819
BstKTI	GATC	4 cut(s)	636, 941, 1054, 1525
BstMAI	GTCTC	2 cut(s)	877, 1856
BstMBI	GATC	4 cut(s)	633, 938, 1051, 1522
BstMWI	GCNNNNNNNGC	7 cut(s)	413, 1277, 1411, 1547, 1561, 1574, 1823
BstNI	CCWGG	2 cut(s)	463, 1078
BstNSI	RCATGY	6 cut(s)	812, 1121, 1142, 1559, 1568, 1602
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	461, 1076
BstSFI	CTRYAG	1 cut(s)	1783
BstSLI	GKGCMC	1 cut(s)	1436
BstV1I	GCAGC	5 cut(s)	150, 185, 1084, 1553, 1666
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BstZ17I	GTATAC	1 cut(s)	791
BsuI	GTATCC	2 cut(s)	426, 1634
BsuRI	GGCC	5 cut(s)	200, 372, 1280, 1611, 2025
BtrI	CACGTC	1 cut(s)	1721
BtsCI	GGATG	4 cut(s)	213, 1237, 1735, 1973
BtsI	GCAGTG	2 cut(s)	1038, 1384
BtsIMutI	CAGTG	3 cut(s)	1038, 1359, 1384
Cac8I	GCNNGC	5 cut(s)	810, 984, 1566, 2019, 2023
CfoI	GCGC	1 cut(s)	1819
Cfr10I	RCCGGY	3 cut(s)	670, 819, 982
Cfr13I	GGNCC	3 cut(s)	817, 1163, 1278
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	5 cut(s)	141, 641, 737, 1028, 1257
CspAI	ACCGGT	2 cut(s)	670, 819
CspCI	CAANNNNNGTGG	2 cut(s)	1616, 1651
CviQI	GTAC	5 cut(s)	141, 641, 737, 1028, 1257
DdeI	CTNAG	8 cut(s)	96, 167, 357, 581, 717, 797, 813, 1573
DpnI	GATC	4 cut(s)	635, 940, 1053, 1524
DpnII	GATC	4 cut(s)	633, 938, 1051, 1522
DraI	TTTAAA	1 cut(s)	655
DraIII	CACNNNGTG	1 cut(s)	1442
EaeI	YGGCCR	1 cut(s)	2023
Eam1104I	CTCTTC	1 cut(s)	1403
EarI	CTCTTC	1 cut(s)	1403
EciI	GGCGGA	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	373, 1630
Eco147I	AGGCCT	2 cut(s)	372, 1611
Eco47I	GGWCC	2 cut(s)	817, 1163
Eco57I	CTGAAG	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	602
EcoNI	CCTNNNNNAGG	2 cut(s)	492, 1477
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	461, 1076
EcoT14I	CCWWGG	2 cut(s)	373, 1630
EcoT22I	ATGCAT	3 cut(s)	273, 393, 1198
ErhI	CCWWGG	2 cut(s)	373, 1630
FalI	AAGNNNNNCTT	4 cut(s)	2001, 2033, 2031, 2063
FaqI	GGGAC	2 cut(s)	1176, 1731
FauI	CCCGC	3 cut(s)	169, 670, 1407
FauNDI	CATATG	1 cut(s)	1102
FbaI	TGATCA	1 cut(s)	1522
FblI	GTMKAC	3 cut(s)	790, 852, 1647
Fnu4HI	GCNGC	8 cut(s)	164, 174, 507, 1098, 1341, 1542, 1680, 2026
FokI	GGATG	4 cut(s)	200, 1244, 1742, 1980
Fsp4HI	GCNGC	8 cut(s)	164, 174, 507, 1098, 1341, 1542, 1680, 2026
FspBI	CTAG	8 cut(s)	374, 458, 477, 510, 944, 1395, 1551, 1827
GlaI	GCGC	1 cut(s)	1818
GluI	GCNGC	8 cut(s)	164, 174, 507, 1098, 1341, 1542, 1680, 2026
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	988
HaeIII	GGCC	5 cut(s)	200, 372, 1280, 1611, 2025
HapII	CCGG	4 cut(s)	671, 820, 983, 1494
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	1819
Hin1I	GRCGYC	2 cut(s)	527, 1934
Hin6I	GCGC	1 cut(s)	1817
HinP1I	GCGC	1 cut(s)	1817
HincII	GTYRAC	1 cut(s)	1768
HindII	GTYRAC	1 cut(s)	1768
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	713, 839, 1661, 1864, 1976
HpaII	CCGG	4 cut(s)	671, 820, 983, 1494
HphI	GGTGA	6 cut(s)	17, 614, 784, 1256, 1429, 1706
Hpy166II	GTNNAC	9 cut(s)	534, 759, 791, 853, 952, 1247, 1311, 1648, 1768
Hpy188I	TCNGA	4 cut(s)	718, 935, 1377, 1981
Hpy188III	TCNNGA	6 cut(s)	488, 967, 1006, 1880, 1997, 2034
Hpy8I	GTNNAC	9 cut(s)	534, 759, 791, 853, 952, 1247, 1311, 1648, 1768
Hpy99I	CGWCG	2 cut(s)	532, 1059
HpyCH4III	ACNGT	3 cut(s)	236, 608, 1949
HpyCH4IV	ACGT	6 cut(s)	139, 735, 1203, 1720, 1884, 1934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	413, 1277, 1411, 1547, 1561, 1574, 1823
HpyF3I	CTNAG	8 cut(s)	96, 167, 357, 581, 717, 797, 813, 1573
HpySE526I	ACGT	6 cut(s)	139, 735, 1203, 1720, 1884, 1934
Hsp92I	GRCGYC	2 cut(s)	527, 1934
HspAI	GCGC	1 cut(s)	1817
KroI	GCCGGC	1 cut(s)	982
KroNI	GCCGGC	1 cut(s)	984
Ksp22I	TGATCA	1 cut(s)	1522
Kzo9I	GATC	4 cut(s)	633, 938, 1051, 1522
LmnI	GCTCC	2 cut(s)	543, 1469
Lsp1109I	GCAGC	5 cut(s)	150, 185, 1084, 1553, 1666
LweI	GCATC	2 cut(s)	258, 280
MaeI	CTAG	8 cut(s)	374, 458, 477, 510, 944, 1395, 1551, 1827
MaeII	ACGT	6 cut(s)	139, 735, 1203, 1720, 1884, 1934
MaeIII	GTNAC	5 cut(s)	465, 602, 1417, 1904, 1935
MalI	GATC	4 cut(s)	635, 940, 1053, 1524
MboI	GATC	4 cut(s)	633, 938, 1051, 1522
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	1436
MluCI	AATT	9 cut(s)	83, 400, 448, 752, 1010, 1065, 1370, 1455, 1954
MlyI	GAGTC	3 cut(s)	707, 833, 1858
MmeI	TCCRAC	4 cut(s)	131, 913, 1616, 1707
Mph1103I	ATGCAT	3 cut(s)	273, 393, 1198
MroNI	GCCGGC	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	1169
MspI	CCGG	4 cut(s)	671, 820, 983, 1494
MspR9I	CCNGG	2 cut(s)	463, 1078
MssI	GTTTAAAC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	463, 1078
MwoI	GCNNNNNNNGC	7 cut(s)	413, 1277, 1411, 1547, 1561, 1574, 1823
NaeI	GCCGGC	1 cut(s)	984
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	4 cut(s)	633, 938, 1051, 1522
NgoMIV	GCCGGC	1 cut(s)	982
NlaIV	GGNNCC	4 cut(s)	635, 1164, 1471, 1492
NmuCI	GTSAC	3 cut(s)	602, 1417, 1935
NsiI	ATGCAT	3 cut(s)	273, 393, 1198
NspI	RCATGY	6 cut(s)	812, 1121, 1142, 1559, 1568, 1602
NspV	TTCGAA	1 cut(s)	1477
PaeI	GCATGC	2 cut(s)	812, 1568
PceI	AGGCCT	2 cut(s)	372, 1611
PcsI	WCGNNNNNNNCGW	1 cut(s)	1890
PdiI	GCCGGC	1 cut(s)	984
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	1661, 1976
PflMI	CCANNNNNTGG	1 cut(s)	1442
PinAI	ACCGGT	2 cut(s)	670, 819
PkrI	GCNGC	8 cut(s)	165, 175, 508, 1099, 1342, 1543, 1681, 2027
PleI	GAGTC	3 cut(s)	707, 833, 1858
PmeI	GTTTAAAC	1 cut(s)	655
PpsI	GAGTC	3 cut(s)	707, 833, 1858
PpuMI	RGGWCCY	1 cut(s)	1163
PshBI	ATTAAT	2 cut(s)	191, 1458
Psp5II	RGGWCCY	1 cut(s)	1163
Psp6I	CCWGG	2 cut(s)	461, 1076
PspEI	GGTNACC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	461, 1076
PspN4I	GGNNCC	4 cut(s)	635, 1164, 1471, 1492
PspPI	GGNCC	3 cut(s)	817, 1163, 1278
PspPPI	RGGWCCY	1 cut(s)	1163
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	5 cut(s)	142, 642, 738, 1029, 1258
RsaNI	GTAC	5 cut(s)	141, 641, 737, 1028, 1257
SatI	GCNGC	8 cut(s)	164, 174, 507, 1098, 1341, 1542, 1680, 2026
Sau3AI	GATC	4 cut(s)	633, 938, 1051, 1522
Sau96I	GGNCC	3 cut(s)	817, 1163, 1278
SchI	GAGTC	3 cut(s)	707, 833, 1858
ScrFI	CCNGG	2 cut(s)	463, 1078
SduI	GDGCHC	1 cut(s)	1436
SfaNI	GCATC	2 cut(s)	258, 280
SfcI	CTRYAG	1 cut(s)	1783
SfuI	TTCGAA	1 cut(s)	1477
SgrAI	CRCCGGYG	1 cut(s)	670
SinI	GGWCC	2 cut(s)	817, 1163
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SphI	GCATGC	2 cut(s)	812, 1568
Sse9I	AATT	9 cut(s)	83, 400, 448, 752, 1010, 1065, 1370, 1455, 1954
SseBI	AGGCCT	2 cut(s)	372, 1611
SsiI	CCGC	7 cut(s)	176, 506, 541, 677, 1340, 1414, 2026
SspI	AATATT	2 cut(s)	1225, 1462
SspMI	CTAG	8 cut(s)	374, 458, 477, 510, 944, 1395, 1551, 1827
StuI	AGGCCT	2 cut(s)	372, 1611
StyD4I	CCNGG	2 cut(s)	461, 1076
StyI	CCWWGG	2 cut(s)	373, 1630
TaaI	ACNGT	3 cut(s)	236, 608, 1949
TaiI	ACGT	6 cut(s)	142, 738, 1206, 1723, 1887, 1937
TaqI	TCGA	5 cut(s)	240, 274, 1054, 1477, 1913
TasI	AATT	9 cut(s)	83, 400, 448, 752, 1010, 1065, 1370, 1455, 1954
TatI	WGTACW	1 cut(s)	1256
TauI	GCSGC	3 cut(s)	509, 1343, 2028
TfiI	GAWTC	2 cut(s)	1661, 1976
TscAI	CASTG	3 cut(s)	1045, 1359, 1391
TseFI	GTSAC	3 cut(s)	602, 1417, 1935
TseI	GCWGC	5 cut(s)	163, 173, 1097, 1541, 1679
Tsp45I	GTSAC	3 cut(s)	602, 1417, 1935
TspDTI	ATGAA	9 cut(s)	245, 765, 1119, 1235, 1255, 1323, 1383, 2019, 2039
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	3 cut(s)	1045, 1359, 1391
Van91I	CCANNNNNTGG	1 cut(s)	1442
Vha464I	CTTAAG	1 cut(s)	1169
VpaK11BI	GGWCC	2 cut(s)	817, 1163
VspI	ATTAAT	2 cut(s)	191, 1458
XagI	CCTNNNNNAGG	2 cut(s)	492, 1477
XapI	RAATTY	3 cut(s)	448, 1065, 1370
XceI	RCATGY	6 cut(s)	812, 1121, 1142, 1559, 1568, 1602
XmaJI	CCTAGG	1 cut(s)	373
XmiI	GTMKAC	3 cut(s)	790, 852, 1647
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	8 cut(s)	374, 458, 477, 510, 944, 1395, 1551, 1827
ZraI	GACGTC	1 cut(s)	1935
Zsp2I	ATGCAT	3 cut(s)	273, 393, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.