Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Forward (+)

63742847 .. 63747335

Gene Structure 4489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGTTGAGGCGGATTGGGTCTCGACCAAGTCGCTGTATATATGTAGCATGGAGAGATATAGGGACGAGAGAGTGTTTACACAGTGTTACAGTCTCCAGGCCATCAACTTGACCGACTTGCTCTCCTTTTCCGATACTCCGATTACCATCTCTTTCTCCAGATCTCCACCAACCAAAGCTATGGGATCTCCACCAACCAAAGTCCAAGACCATATCCTGCGAGAAGTTGATTTTCTTCAAGGCAACGACGTTCCCTACGACATGGGTTTCGGTGTGTTTGGATCTCAGATTGTTTTGGCCGGCGGACTTCAACTTCCACAACGACATCGGACTTCCAAGGTCTACATGTTGGACACCTTGCGAGATAAGCCCAAGTTCGTCAAACGCAAAGCCAACAAACCCAAAGCTCGTGATCAAGGAATTCCGGAATTTCAATCACCAAAACGTCTTCCCCAGCTGATGGAGATCGAGGGTAAACTATACGCTCTTGACTTACGGCCTCAACAAGGCTTCCCCAGCTCCTCGTCCTTTGAGGTATTTGACCCCCAAACAGGATCATGGGCCGCTCTTCCGGATTATCCTTCCCCGATTATCCAATGTCGTGGTCCCCTCTCTTGTGCAGTTGTTTTAAGGGAGAAGGAGAAAGGCATGTGCTTCGAGGAGGTCGGAGATGAAGGTCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.8

Weight (kDa)

6.18

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	345
AccIII	TCCGGA	2 cut(s)	427, 574
AciI	CCGC	3 cut(s)	14, 306, 567
AclWI	GGATC	3 cut(s)	196, 292, 565
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	423, 431
AfiI	CCNNNNNNNGG	3 cut(s)	463, 509, 554
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	242, 314, 437
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	182, 410, 460, 522
AluI	AGCT	4 cut(s)	182, 410, 460, 522
Alw26I	GTCTC	2 cut(s)	28, 101
AlwI	GGATC	3 cut(s)	196, 292, 565
Aor13HI	TCCGGA	2 cut(s)	427, 574
AoxI	GGCC	4 cut(s)	102, 300, 500, 564
ApoI	RAATTY	2 cut(s)	423, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	3 cut(s)	564, 608, 680
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	608, 680
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	3 cut(s)	113, 158, 457
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	28, 101
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	608, 680
BmgT120I	GGNCC	3 cut(s)	564, 608, 680
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	83, 145
BsaBI	GATNNNNATC	2 cut(s)	149, 467
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	2 cut(s)	427, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 509, 554
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	683
Bse8I	GATNNNNATC	2 cut(s)	149, 467
BseAI	TCCGGA	2 cut(s)	427, 574
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	339
BseJI	GATNNNNATC	2 cut(s)	149, 467
BseLI	CCNNNNNNNGG	3 cut(s)	463, 509, 554
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	2 cut(s)	514, 677
BseYI	CCCAGC	2 cut(s)	456, 518
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	4 cut(s)	104, 302, 502, 566
BsiSI	CCGG	3 cut(s)	303, 428, 575
BslFI	GGGAC	2 cut(s)	80, 594
BslI	CCNNNNNNNGG	3 cut(s)	463, 509, 554
BsmAI	GTCTC	2 cut(s)	28, 101
BsmFI	GGGAC	2 cut(s)	80, 594
BsnI	GGCC	4 cut(s)	104, 302, 502, 566
Bso31I	GGTCTC	1 cut(s)	28
Bsp13I	TCCGGA	2 cut(s)	427, 574
Bsp143I	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
BspACI	CCGC	3 cut(s)	14, 306, 567
BspANI	GGCC	4 cut(s)	104, 302, 502, 566
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	2 cut(s)	427, 574
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	3 cut(s)	196, 292, 565
BspQI	GCTCTTC	1 cut(s)	576
BspTNI	GGTCTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	683
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	87, 95
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstKTI	GATC	6 cut(s)	167, 191, 287, 418, 471, 560
BstMAI	GTCTC	2 cut(s)	28, 101
BstMBI	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 519
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	2 cut(s)	352, 655
BstSCI	CCNGG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	3 cut(s)	164, 188, 284
BstXI	CCANNNNNNTGG	2 cut(s)	184, 605
BstYI	RGATCY	3 cut(s)	164, 188, 284
BsuRI	GGCC	4 cut(s)	104, 302, 502, 566
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	564, 608, 680
CviAII	CATG	5 cut(s)	52, 265, 349, 561, 652
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	6 cut(s)	166, 190, 286, 417, 470, 559
DpnII	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	2 cut(s)	29, 321
Eco130I	CCWWGG	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	608, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	5 cut(s)	55, 268, 352, 564, 655
FaqI	GGGAC	2 cut(s)	80, 594
FatI	CATG	5 cut(s)	51, 264, 348, 560, 651
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	2 cut(s)	460, 522
GsuI	CTGGAG	2 cut(s)	83, 145
HaeIII	GGCC	4 cut(s)	104, 302, 502, 566
HapII	CCGG	3 cut(s)	303, 428, 575
Hin1II	CATG	5 cut(s)	55, 268, 352, 564, 655
HpaII	CCGG	3 cut(s)	303, 428, 575
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	81, 346, 479
Hpy188I	TCNGA	5 cut(s)	136, 144, 291, 333, 671
Hpy188III	TCNNGA	6 cut(s)	25, 162, 413, 428, 491, 575
Hpy8I	GTNNAC	3 cut(s)	81, 346, 479
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	594, 634, 671
HpyCH4III	ACNGT	2 cut(s)	87, 95
HpyCH4IV	ACGT	2 cut(s)	252, 448
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 519
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	252, 448
Hsp92II	CATG	5 cut(s)	55, 268, 352, 564, 655
Kpn2I	TCCGGA	2 cut(s)	427, 574
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	527
MaeII	ACGT	2 cut(s)	252, 448
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	6 cut(s)	166, 190, 286, 417, 470, 559
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
MboII	GAAGA	3 cut(s)	230, 443, 563
MflI	RGATCY	3 cut(s)	164, 188, 284
MluCI	AATT	2 cut(s)	423, 431
MmeI	TCCRAC	2 cut(s)	333, 649
MnlI	CCTC	8 cut(s)	4, 466, 513, 529, 535, 623, 655, 658
MroI	TCCGGA	2 cut(s)	427, 574
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	3 cut(s)	303, 428, 575
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	370, 519
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	5 cut(s)	55, 268, 352, 564, 655
NlaIV	GGNNCC	1 cut(s)	610
NspI	RCATGY	2 cut(s)	352, 655
PciI	ACATGT	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	456, 518
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	3 cut(s)	564, 608, 680
PsuI	RGATCY	3 cut(s)	164, 188, 284
PsyI	GACNNNGTC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	6 cut(s)	164, 188, 284, 415, 468, 557
Sau96I	GGNCC	3 cut(s)	564, 608, 680
ScrFI	CCNGG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	608, 680
Sse9I	AATT	2 cut(s)	423, 431
SsiI	CCGC	3 cut(s)	14, 306, 567
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	87, 95
TaiI	ACGT	2 cut(s)	255, 451
TaqI	TCGA	3 cut(s)	26, 471, 660
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	423, 431
TauI	GCSGC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	690
TspRI	CASTG	1 cut(s)	92
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	608, 680
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	2 cut(s)	423, 431
XceI	RCATGY	2 cut(s)	352, 655
XmiI	GTMKAC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.