Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000996.1

Orthogroup ID

OG0005924

Physical Location & Seq

Genomic Coordinates Forward (+)

44470 .. 45423

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000996.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggttagaaatgctactagcatgcagggaaaatcgagatttagagtaaggaaaggaggtttagggtctgagagttggaattcgaaagccatggaggctgaggcggattgggtctcgaccaagtcgctgtatatttgtagcatggagagatatagggacgagctcgggttttcacattgttacagtgtccaggccctcaacttgaccgacttgctctccttttccgatacgccgattaccaccatctctttttccagatctccactaaccgaatctatgagatctccaatagcaaccaaagctatgagccacgaccaagaccaagagcatattctgcgagaagtttattttcttccagggaacgacgttccctacgatatgggttttggtgtgtttggatctcagattgttttggccggcggactagaacgtccacatcgacatcggacttccaaggtctacgtgttggacaccttgcgaggtaagcccaagttcatcaaacgcaaagccaacaaacccaaagctcgtgataatggaattccggaatttcaatcaccaaaacgtcttccccagctgatggagatcgagggtaaactgtacgctctcgacttacagcctgaagaagacttccccagctcctcgtcctcgtcctttgaggtatttgacccccaaaccggatcatgggccgcccttccggatcatcctccccctattatcgaatgcggtgatatcctctcttgtgcagtagttgtcagcaccaagatcttgatctctggcttggatactccggtctactgctttgacgtggcggagcctagccgaccatggaatgaactctcggttcatcatgaccgcgatcaacaactgtcaaattctgatgatgagtccggtgcccttccctttttggatgttttggttttggacttggaggaatataatggtaagatattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.51

Weight (kDa)

5.34

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28941
pyrus_communis	pycom05g01990 pycom08g14640
rosa_chinensis	RchiOBHm_Chr1g0376501
rosa_laevigata	RLG00000026605
rosa_multiflora	Rmu_sc0000996.1_g000014 Rmu_sc0001198.1_g000011 Rmu_sc0001308.1_g000025 Rmu_sc0001308.1_g000032 Rmu_sc0001308.1_g000034 Rmu_sc0001308.1_g000039 Rmu_sc0001308.1_g000040 Rmu_sc0001308.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282050
rosa_rugosa	Rorug01G0185700
rosa_samantha	Rh1AG408200 Rh1AG408700 Rh1AG408800 Rh1AG409800 Rh1AG409900 Rh1AG410200 Rh1AG410500 Rh1BG371700 Rh1CG384400 Rh1CG385400 Rh1DG401300 Rh1DG402400 Rh1DG402500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	890
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	2 cut(s)	459, 792
AccII	CGCG	1 cut(s)	855
AccIII	TCCGGA	2 cut(s)	541, 694
AciI	CCGC	6 cut(s)	104, 420, 687, 723, 809, 853
AclWI	GGATC	3 cut(s)	406, 685, 705
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	79, 537, 545, 871
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	577, 674, 681
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	551
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	189, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	163, 302, 524, 574, 636
AluI	AGCT	5 cut(s)	163, 302, 524, 574, 636
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	3 cut(s)	406, 685, 705
Ama87I	CYCGRG	1 cut(s)	164
Aor13HI	TCCGGA	2 cut(s)	541, 694
AoxI	GGCC	3 cut(s)	192, 414, 684
ApoI	RAATTY	4 cut(s)	79, 537, 545, 871
AspS9I	GGNCC	2 cut(s)	193, 684
AsuHPI	GGTGA	2 cut(s)	546, 737
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	895
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BanI	GGYRCC	1 cut(s)	890
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	557, 630
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	99
BccI	CCATC	2 cut(s)	251, 571
BciT130I	CCWGG	2 cut(s)	191, 357
BciVI	GTATCC	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	3 cut(s)	18, 425, 816
BfuI	GTATCC	1 cut(s)	775
BglI	GCCNNNNNGGC	1 cut(s)	95
BglII	AGATCT	3 cut(s)	257, 281, 762
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	191, 357
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	193, 684
BmiI	GGNNCC	2 cut(s)	813, 892
BmrFI	CCNGG	2 cut(s)	191, 357
BpiI	GAAGAC	2 cut(s)	557, 630
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	463
BsaBI	GATNNNNATC	2 cut(s)	581, 767
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	90, 356, 453, 824
BsaWI	WCCGGW	5 cut(s)	541, 674, 694, 787, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	577, 674, 681
Bse118I	RCCGGY	1 cut(s)	416
Bse8I	GATNNNNATC	2 cut(s)	581, 767
BseAI	TCCGGA	2 cut(s)	541, 694
BseBI	CCWGG	2 cut(s)	191, 357
BseDI	CCNNGG	4 cut(s)	90, 356, 453, 824
BseGI	GGATG	2 cut(s)	700, 913
BseJI	GATNNNNATC	2 cut(s)	581, 767
BseLI	CCNNNNNNNGG	3 cut(s)	577, 674, 681
BseMII	CTCAG	3 cut(s)	60, 90, 416
BseRI	GAGGAG	1 cut(s)	628
BseSI	GKGCMC	1 cut(s)	895
BseYI	CCCAGC	2 cut(s)	570, 632
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	855
BshFI	GGCC	3 cut(s)	194, 416, 686
BshNI	GGYRCC	1 cut(s)	890
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	6 cut(s)	417, 542, 675, 695, 788, 888
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	577, 674, 681
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	194, 416, 686
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	165, 895
Bsp13I	TCCGGA	2 cut(s)	541, 694
Bsp143I	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
Bsp19I	CCATGG	2 cut(s)	90, 824
BspACI	CCGC	6 cut(s)	104, 420, 687, 723, 809, 853
BspANI	GGCC	3 cut(s)	194, 416, 686
BspCNI	CTCAG	3 cut(s)	61, 91, 415
BspEI	TCCGGA	2 cut(s)	541, 694
BspFNI	CGCG	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	813, 892
BspPI	GGATC	3 cut(s)	406, 685, 705
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	4 cut(s)	90, 356, 453, 824
BssMI	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	3 cut(s)	90, 453, 824
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	191, 357
Bst4CI	ACNGT	3 cut(s)	185, 597, 867
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	23, 418
BstDEI	CTNAG	3 cut(s)	69, 99, 402
BstDSI	CCRYGG	2 cut(s)	90, 824
BstF5I	GGATG	2 cut(s)	700, 913
BstFNI	CGCG	1 cut(s)	855
BstKTI	GATC	9 cut(s)	260, 284, 401, 585, 680, 700, 765, 771, 859
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 299, 334, 484
BstNI	CCWGG	2 cut(s)	191, 357
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	189, 355
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	855
BstV2I	GAAGAC	2 cut(s)	557, 630
BstX2I	RGATCY	4 cut(s)	257, 281, 398, 762
BstYI	RGATCY	4 cut(s)	257, 281, 398, 762
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	194, 416, 686
BtgI	CCRYGG	2 cut(s)	90, 824
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	2 cut(s)	700, 913
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	23, 418
CciI	TCATGA	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	193, 684
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	6 cut(s)	22, 91, 142, 681, 825, 848
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	69, 99, 402
DpnI	GATC	9 cut(s)	259, 283, 400, 584, 679, 699, 764, 770, 858
DpnII	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
DrdI	GACNNNNNNGTC	1 cut(s)	429
DseDI	GACNNNNNNGTC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	414
EciI	GGCGGA	3 cut(s)	119, 435, 824
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	90, 453, 824
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	730
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	2 cut(s)	79, 537
EcoRII	CCWGG	2 cut(s)	189, 355
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	3 cut(s)	90, 453, 824
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	3 cut(s)	90, 453, 824
FaeI	CATG	6 cut(s)	25, 94, 145, 684, 828, 851
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	6 cut(s)	21, 90, 141, 680, 824, 847
FblI	GTMKAC	2 cut(s)	459, 792
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	2 cut(s)	687, 920
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	3 cut(s)	18, 425, 816
GluI	GCNGC	1 cut(s)	687
GsaI	CCCAGC	2 cut(s)	574, 636
HaeIII	GGCC	3 cut(s)	194, 416, 686
HapII	CCGG	6 cut(s)	417, 542, 675, 695, 788, 888
Hin1II	CATG	6 cut(s)	25, 94, 145, 684, 828, 851
HinfI	GANTC	2 cut(s)	272, 884
HpaII	CCGG	6 cut(s)	417, 542, 675, 695, 788, 888
HphI	GGTGA	2 cut(s)	546, 737
Hpy166II	GTNNAC	4 cut(s)	434, 460, 593, 793
Hpy188I	TCNGA	5 cut(s)	70, 226, 405, 447, 877
Hpy188III	TCNNGA	9 cut(s)	36, 115, 255, 527, 542, 605, 695, 766, 848
Hpy8I	GTNNAC	4 cut(s)	434, 460, 593, 793
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	701, 905
HpyCH4III	ACNGT	3 cut(s)	185, 597, 867
HpyCH4IV	ACGT	5 cut(s)	366, 430, 462, 562, 804
HpyCH4V	TGCA	2 cut(s)	25, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 299, 334, 484
HpyF3I	CTNAG	3 cut(s)	69, 99, 402
HpySE526I	ACGT	5 cut(s)	366, 430, 462, 562, 804
Hsp92II	CATG	6 cut(s)	25, 94, 145, 684, 828, 851
Kpn2I	TCCGGA	2 cut(s)	541, 694
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
LmnI	GCTCC	2 cut(s)	641, 811
MaeI	CTAG	3 cut(s)	18, 425, 816
MaeII	ACGT	5 cut(s)	366, 430, 462, 562, 804
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	9 cut(s)	259, 283, 400, 584, 679, 699, 764, 770, 858
MboI	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
MboII	GAAGA	4 cut(s)	344, 557, 632, 635
MflI	RGATCY	4 cut(s)	257, 281, 398, 762
MhlI	GDGCHC	2 cut(s)	165, 895
MluCI	AATT	4 cut(s)	79, 537, 545, 871
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	56, 447
MroI	TCCGGA	2 cut(s)	541, 694
MroNI	GCCGGC	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	6 cut(s)	417, 542, 675, 695, 788, 888
MspR9I	CCNGG	2 cut(s)	191, 357
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	2 cut(s)	191, 357
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	4 cut(s)	95, 299, 334, 484
NaeI	GCCGGC	1 cut(s)	418
NcoI	CCATGG	2 cut(s)	90, 824
NdeII	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	6 cut(s)	25, 94, 145, 684, 828, 851
NlaIV	GGNNCC	2 cut(s)	813, 892
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	25
PagI	TCATGA	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 436
PctI	GAATGC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	189, 355
PspFI	CCCAGC	2 cut(s)	570, 632
PspGI	CCWGG	2 cut(s)	189, 355
PspN4I	GGNNCC	2 cut(s)	813, 892
PspPI	GGNCC	2 cut(s)	193, 684
PsuI	RGATCY	4 cut(s)	257, 281, 398, 762
PsyI	GACNNNGTC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SacI	GAGCTC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	9 cut(s)	257, 281, 398, 582, 677, 697, 762, 768, 856
Sau96I	GGNCC	2 cut(s)	193, 684
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	2 cut(s)	191, 357
SduI	GDGCHC	2 cut(s)	165, 895
SfuI	TTCGAA	1 cut(s)	83
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	4 cut(s)	79, 537, 545, 871
SsiI	CCGC	6 cut(s)	104, 420, 687, 723, 809, 853
SspMI	CTAG	3 cut(s)	18, 425, 816
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	189, 355
StyI	CCWWGG	3 cut(s)	90, 453, 824
TaaI	ACNGT	3 cut(s)	185, 597, 867
TaiI	ACGT	5 cut(s)	369, 433, 465, 565, 807
TaqI	TCGA	7 cut(s)	35, 83, 116, 439, 585, 606, 717
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	4 cut(s)	79, 537, 545, 871
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	484, 833, 846
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	577
XapI	RAATTY	4 cut(s)	79, 537, 545, 871
XceI	RCATGY	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	459, 792
XspI	CTAG	3 cut(s)	18, 425, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.