RchiOBHm_Chr2g0126511

Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
41038877 .. 41040654
1778 bp
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UTR
Exon/CDS
Intron
PRQ49849

Sequence Viewer

Length: 336 bp
ATGTCCTTCATTTTCTCTATGGTTTTCTGGGTGCAGAAACATACTGTGATTGAGTCCAAGCCTGAACATTTTCTGGATGACCTTCGTTTGAATAATCCATGGCCTGAGCTTAGAAGGAACAGAGAGCTTATCAAAACTAGGATGACTGCAGATGATGTAGATAACTACAGTGAAGCATTGAGAACTCCTTTAAAGTCTTTACTCCTTGAGGAATTAGAATTCCTAGCAAAAGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAGTACCAGATATAACATCTTCAACTGAGTTAGCACTATGTAGCTTTACAGAAAACCTACCAAGCCAAGGCTGA

Protein Analysis

111

Amino Acids

12.64

Weight (kDa)

4.67

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 247
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 257, 329
AgsI TTSAA 2 cut(s) 91, 285
AluBI AGCT 3 cut(s) 109, 127, 306
AluI AGCT 3 cut(s) 109, 127, 306
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 254
BanI GGYRCC 1 cut(s) 247
BfaI CTAG 2 cut(s) 138, 224
BfmI CTRYAG 2 cut(s) 147, 166
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 98, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 329
BseDI CCNNGG 2 cut(s) 98, 328
BseGI GGATG 2 cut(s) 82, 147
BseLI CCNNNNNNNGG 2 cut(s) 257, 329
BseMII CTCAG 2 cut(s) 96, 279
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 257, 329
BsnI GGCC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 1 cut(s) 260
Bsp19I CCATGG 1 cut(s) 98
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 97, 280
BspLI GGNNCC 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 98, 328
BssMI GATC 1 cut(s) 260
BssT1I CCWWGG 2 cut(s) 98, 328
Bst4CI ACNGT 2 cut(s) 46, 170
BstDEI CTNAG 3 cut(s) 105, 110, 288
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 82, 147
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 147, 166
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 82, 147
BtsIMutI CAGTG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 99
CviJI RGCY 7 cut(s) 61, 103, 109, 127, 306, 327, 333
CviKI_1 RGCY 7 cut(s) 61, 103, 109, 127, 306, 327, 333
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 3 cut(s) 105, 110, 288
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
DraI TTTAAA 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 98, 328
Eco88I CYCGRG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 218
EcoT14I CCWWGG 2 cut(s) 98, 328
ErhI CCWWGG 2 cut(s) 98, 328
FaeI CATG 1 cut(s) 102
FaiI YATR 5 cut(s) 20, 42, 100, 275, 301
FatI CATG 1 cut(s) 98
FokI GGATG 2 cut(s) 89, 154
FspBI CTAG 2 cut(s) 138, 224
HaeIII GGCC 1 cut(s) 103
Hin1II CATG 1 cut(s) 102
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 16, 92, 108, 227
HpyCH4III ACNGT 2 cut(s) 46, 170
HpyCH4V TGCA 2 cut(s) 34, 149
HpyF3I CTNAG 3 cut(s) 105, 110, 288
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 5 cut(s) 13, 59, 75, 117, 282
MaeI CTAG 2 cut(s) 138, 224
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 1 cut(s) 273
MluCI AATT 2 cut(s) 212, 218
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 4 cut(s) 202, 238, 250, 263
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 191
NcoI CCATGG 1 cut(s) 98
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 69
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 254
PstI CTGCAG 1 cut(s) 151
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 191
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 62
SetI ASST 6 cut(s) 84, 111, 129, 238, 308, 321
SfcI CTRYAG 2 cut(s) 147, 166
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 206, 254
SmoI CTYRAG 2 cut(s) 206, 254
Sse9I AATT 2 cut(s) 212, 218
SspMI CTAG 2 cut(s) 138, 224
StyI CCWWGG 2 cut(s) 98, 328
TaaI ACNGT 2 cut(s) 46, 170
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 212, 218
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 175
TspRI CASTG 1 cut(s) 175
XapI RAATTY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 138, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.