Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003074

Physical Location & Seq

Genomic Coordinates Forward (+)

38872841 .. 38903408

Gene Structure 30568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCCTTCATTTTCTCTATGGTTTTCTGGGTGCAGAAACATACTGTGATTGAGTCCAAGCCTGAACATTTTCTGGATGACCTTCGTTTGAATAATCCATGGCCTGAGCTTAGAAGGTACAGAGAGCTTATCAAAACTAGGATGACTGCAGATGATGTAGATAACTACAGTGAAGCATTGAGAACTCCTTTAAAGTCTTTACTCCTTGAGGAATTAGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAGTACCAGATATAACATCTTCAACTGAGCACTATGTAGCTTTACAGAAAACCTACCAAGCCAAGGCTGAGGCTGATTTTCTAAAAACTCAAAGTAGATTTCCAAGGACTGTCTTCTTGATGCTCTCTTTGGCTGCTCAGATGGGCTACATGCACTTTGGCACAGTCAAGATATATGGTTCTGAGGCTGCCCTTATAAACACTTTAACAGAGACAACCTCCTCTACTCTCAATTCCGGCTCTCGATTTTGCGTTAGCAGGTTGAGGAATTGGCTTCTCTTGTCAAGGACAATCTTTTGTGCAAGCATCTTATTCTCTCAGTGGAAGAGGCTTCTTATTCTCTCAGTGGAAGAGGCTTTGGTGGACTTCCGTCAGAGTGATACCAAGCATTGGATGACATCTGTAGAACTTACTGCAAGCATAAGTAAGCAGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

233

Amino Acids

26.7

Weight (kDa)

6.53

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003074)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323891 RchiOBHm_Chr1g0335231 RchiOBHm_Chr2g0118851 RchiOBHm_Chr2g0126511 RchiOBHm_Chr3g0476741 RchiOBHm_Chr3g0496911 RchiOBHm_Chr4g0396851 RchiOBHm_Chr5g0011001 RchiOBHm_Chr6g0268661 RchiOBHm_Chr6g0277741 RchiOBHm_Chr7g0198761
rosa_laevigata	RLG00000031513 RLG00000036205
rosa_roxburghii	Rroxscaffold_1G00032130 Rroxscaffold_4G00300230 Rroxscaffold_5G00344380
rosa_rugosa	Rorug03G0204900
rosa_samantha	Rh1CG284200 Rh1DG080200 Rh1DG111800 Rh2AG457400 Rh2CG444800 Rh2DG302500 Rh2DG558600 Rh3CG300400 Rh3CG307000 Rh3DG303200 Rh5AG331900 Rh5BG563500 Rh5CG094000 Rh5CG585600 Rh5DG237400 Rh5DG291800 Rh6BG149700 Rh6CG310100 Rh6DG133800 Rh6DG218400 Rh6DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AbsI	CCTCGAGG	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	651
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	119, 267
AfiI	CCNNNNNNNGG	3 cut(s)	257, 325, 651
AgsI	TTSAA	2 cut(s)	91, 285
AluBI	AGCT	3 cut(s)	109, 127, 302
AluI	AGCT	3 cut(s)	109, 127, 302
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	395, 449
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	382, 436
BccI	CCATC	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	138, 224
BfmI	CTRYAG	3 cut(s)	147, 166, 663
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	2 cut(s)	396, 450
BlsI	GCNGC	2 cut(s)	397, 451
BmeT110I	CYCGRG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	2 cut(s)	372, 576
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu10I	CCTNAGC	2 cut(s)	105, 330
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	98, 324, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 325, 651
BseDI	CCNNGG	3 cut(s)	98, 324, 365
BseGI	GGATG	3 cut(s)	82, 147, 660
BseLI	CCNNNNNNNGG	3 cut(s)	257, 325, 651
BseMII	CTCAG	7 cut(s)	96, 279, 321, 413, 435, 593, 618
BseRI	GAGGAG	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	382, 436
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	257, 325, 651
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	260
Bsp19I	CCATGG	1 cut(s)	98
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	7 cut(s)	97, 280, 322, 412, 436, 592, 617
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	98, 324, 365
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	3 cut(s)	98, 324, 365
Bst4CI	ACNGT	4 cut(s)	46, 170, 373, 427
Bst6I	CTCTTC	2 cut(s)	581, 606
BstC8I	GCNNGC	2 cut(s)	565, 679
BstDEI	CTNAG	8 cut(s)	105, 110, 288, 330, 399, 444, 579, 604
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	82, 147, 660
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	415
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSFI	CTRYAG	3 cut(s)	147, 166, 663
BstV1I	GCAGC	2 cut(s)	382, 436
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	82, 147, 660
BtsIMutI	CAGTG	3 cut(s)	175, 587, 612
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	565, 679
Csp6I	GTAC	2 cut(s)	118, 266
CviAII	CATG	2 cut(s)	99, 412
CviQI	GTAC	2 cut(s)	118, 266
DdeI	CTNAG	8 cut(s)	105, 110, 288, 330, 399, 444, 579, 604
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	581, 606
EarI	CTCTTC	2 cut(s)	581, 606
Eco130I	CCWWGG	3 cut(s)	98, 324, 365
Eco88I	CYCGRG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	3 cut(s)	98, 324, 365
ErhI	CCWWGG	3 cut(s)	98, 324, 365
FaeI	CATG	2 cut(s)	102, 415
FatI	CATG	2 cut(s)	98, 411
Fnu4HI	GCNGC	2 cut(s)	396, 450
FokI	GGATG	3 cut(s)	89, 154, 667
Fsp4HI	GCNGC	2 cut(s)	396, 450
FspBI	CTAG	2 cut(s)	138, 224
GluI	GCNGC	2 cut(s)	396, 450
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	498
Hin1II	CATG	2 cut(s)	102, 415
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	3 cut(s)	402, 445, 636
Hpy188III	TCNNGA	4 cut(s)	74, 379, 430, 504
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	5 cut(s)	16, 92, 108, 227, 688
HpyCH4III	ACNGT	4 cut(s)	46, 170, 373, 427
HpyCH4V	TGCA	5 cut(s)	34, 149, 415, 563, 677
HpyF3I	CTNAG	8 cut(s)	105, 110, 288, 330, 399, 444, 579, 604
Hsp92II	CATG	2 cut(s)	102, 415
Kzo9I	GATC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	13, 59, 75, 117, 282, 505, 511
Lsp1109I	GCAGC	2 cut(s)	382, 436
LweI	GCATC	2 cut(s)	372, 576
MaeI	CTAG	2 cut(s)	138, 224
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	4 cut(s)	273, 367, 598, 623
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	4 cut(s)	212, 218, 493, 529
MlyI	GAGTC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	191, 467
MspI	CCGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	102, 415
NlaIV	GGNNCC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	397, 451
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PshAI	GACNNNNGTC	1 cut(s)	630
PsiI	TTATAA	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	151
RsaI	GTAC	2 cut(s)	119, 267
RsaNI	GTAC	2 cut(s)	118, 266
SaqAI	TTAA	2 cut(s)	191, 467
SatI	GCNGC	2 cut(s)	396, 450
Sau3AI	GATC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	372, 576
SfcI	CTRYAG	3 cut(s)	147, 166, 663
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	206, 254
SmoI	CTYRAG	2 cut(s)	206, 254
Sse9I	AATT	4 cut(s)	212, 218, 493, 529
SspMI	CTAG	2 cut(s)	138, 224
StyI	CCWWGG	3 cut(s)	98, 324, 365
TaaI	ACNGT	4 cut(s)	46, 170, 373, 427
TaqI	TCGA	2 cut(s)	255, 505
TasI	AATT	4 cut(s)	212, 218, 493, 529
Tru1I	TTAA	2 cut(s)	191, 467
Tru9I	TTAA	2 cut(s)	191, 467
TscAI	CASTG	3 cut(s)	175, 587, 612
TseI	GCWGC	2 cut(s)	395, 449
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	3 cut(s)	175, 587, 612
Van91I	CCANNNNNTGG	1 cut(s)	651
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	138, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.